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Iodine in PDB 7vin: Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution.

Enzymatic activity of Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution.

All present enzymatic activity of Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution.:
1.11.1.7;

Protein crystallography data

The structure of Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution., PDB code: 7vin was solved by V.Viswanathan, N.Pandey, A.K.Singh, M.Sinha, R.P.Sing, P.Sharma, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.30 / 1.89
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.99, 79.93, 76.31, 90, 102.18, 90
R / Rfree (%) 20.2 / 25.8

Other elements in 7vin:

The structure of Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution. also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Iron (Fe) 1 atom
Calcium (Ca) 1 atom

Iodine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 38;

Binding sites:

The binding sites of Iodine atom in the Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution. (pdb code 7vin). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 38 binding sites of Iodine where determined in the Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution., PDB code: 7vin:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 38 in 7vin

Go back to Iodine Binding Sites List in 7vin
Iodine binding site 1 out of 38 in the Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I605

b:22.5
occ:0.40
 I A:IOD605 0.0 22.5 0.4
I A:IOD605 0.8 31.5 0.5
O A:HOH835 3.4 35.7 1.0
ND2 A:ASN80 3.4 19.1 1.0
CG A:PRO145 3.6 23.9 1.0
CB A:PRO145 4.0 24.2 1.0
CB A:ASN80 4.0 17.3 1.0
CG A:ASN80 4.2 17.4 1.0
CG A:GLU77 4.4 22.1 1.0
CB A:ASN147 4.6 34.0 1.0
CE A:LYS81 4.6 31.0 1.0
CA A:GLU77 4.7 19.2 1.0
N A:ASP148 4.8 25.6 1.0
C A:ASN147 4.8 30.2 1.0
CG A:LYS81 4.9 26.2 1.0
N A:ASN147 4.9 32.9 1.0
CB A:GLU77 4.9 21.7 1.0
O A:GLU77 5.0 17.4 1.0
CD A:GLU77 5.0 25.2 1.0
CD A:PRO145 5.0 24.5 1.0

Iodine binding site 2 out of 38 in 7vin

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Iodine binding site 2 out of 38 in the Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I605

b:31.5
occ:0.50
 I A:IOD605 0.0 31.5 0.5
I A:IOD605 0.8 22.5 0.4
O A:HOH835 3.7 35.7 1.0
ND2 A:ASN80 3.9 19.1 1.0
CE A:LYS81 3.9 31.0 1.0
CB A:ASN80 4.0 17.3 1.0
CG A:LYS81 4.2 26.2 1.0
CG A:PRO145 4.2 23.9 1.0
CG A:GLU77 4.2 22.1 1.0
CD A:LYS81 4.5 26.7 1.0
CG A:ASN80 4.5 17.4 1.0
CB A:PRO145 4.5 24.2 1.0
NZ A:LYS81 4.6 32.4 1.0
O A:GLU77 4.7 17.4 1.0
CA A:GLU77 4.7 19.2 1.0
CD A:GLU77 4.8 25.2 1.0
CB A:ASN147 4.8 34.0 1.0
CB A:GLU77 4.9 21.7 1.0
OE2 A:GLU77 5.0 24.1 1.0

Iodine binding site 3 out of 38 in 7vin

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Iodine binding site 3 out of 38 in the Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I606

b:24.9
occ:0.50
 I A:IOD606 0.0 24.9 0.5
I A:IOD606 1.3 25.9 0.5
NE1 A:TRP530 3.1 29.8 1.0
CZ2 A:TRP530 3.6 32.2 1.0
CE2 A:TRP530 3.7 30.7 1.0
O A:HOH996 3.9 31.3 1.0
CB A:PHE309 4.1 22.2 1.0
CZ2 A:TRP529 4.1 31.5 1.0
CA A:ILE306 4.2 23.9 1.0
O A:HOH1154 4.2 36.7 1.0
CD1 A:TRP530 4.3 28.9 1.0
CG1 A:ILE306 4.4 30.0 1.0
N A:ARG310 4.6 27.5 1.0
O A:GLN305 4.6 22.0 1.0
O A:ILE306 4.7 25.9 1.0
CB A:ILE306 4.7 26.2 1.0
CB A:ARG310 4.8 32.1 1.0
N A:ILE306 4.8 25.8 1.0
CE2 A:TRP529 4.9 30.2 1.0
OE1 A:GLU531 4.9 48.1 1.0
CH2 A:TRP530 4.9 32.0 1.0
C A:PHE309 4.9 24.0 1.0
CH2 A:TRP529 4.9 30.7 1.0
CA A:PHE309 5.0 21.9 1.0
CG2 A:ILE306 5.0 28.4 1.0
C A:GLN305 5.0 23.0 1.0
C A:ILE306 5.0 22.2 1.0
CD2 A:TRP530 5.0 30.7 1.0
NE1 A:TRP529 5.0 33.4 1.0

Iodine binding site 4 out of 38 in 7vin

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Iodine binding site 4 out of 38 in the Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I606

b:25.9
occ:0.50
 I A:IOD606 0.0 25.9 0.5
I A:IOD606 1.3 24.9 0.5
O A:HOH1154 3.0 36.7 1.0
O A:HOH996 3.3 31.3 1.0
CB A:PHE309 3.9 22.2 1.0
N A:ARG310 4.0 27.5 1.0
CB A:ARG310 4.2 32.1 1.0
C A:PHE309 4.2 24.0 1.0
NE1 A:TRP530 4.3 29.8 1.0
O A:HOH1058 4.3 45.2 1.0
CA A:ARG310 4.4 28.2 1.0
CZ2 A:TRP530 4.5 32.2 1.0
CA A:PHE309 4.6 21.9 1.0
O A:PHE309 4.7 21.6 1.0
O A:ILE306 4.8 25.9 1.0
CE2 A:TRP530 4.8 30.7 1.0
CZ2 A:TRP529 4.8 31.5 1.0
CA A:ILE306 4.8 23.9 1.0
O A:HOH941 5.0 32.5 1.0

Iodine binding site 5 out of 38 in 7vin

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Iodine binding site 5 out of 38 in the Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I607

b:34.9
occ:0.25
 I A:IOD607 0.0 34.9 0.2
I A:IOD607 1.4 44.0 0.2
O A:HOH1124 2.5 42.9 1.0
O A:HOH851 2.8 32.9 1.0
CG A:ARG31 3.8 40.5 1.0
NH1 A:ARG31 3.8 44.8 1.0
CB A:ARG31 3.9 36.8 1.0
ND2 A:ASN333 4.1 37.8 1.0
O A:HOH1064 4.2 35.7 1.0
CD A:ARG31 4.2 46.5 1.0
CB A:ASN333 4.7 29.7 1.0
O A:HOH994 4.7 19.6 0.5
CE2 A:TYR331 4.7 28.2 1.0
CZ A:ARG31 4.9 45.9 1.0
CG A:ASN333 4.9 33.0 1.0
CD A:ARG527 4.9 28.8 1.0
N A:ARG31 5.0 32.1 1.0

Iodine binding site 6 out of 38 in 7vin

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Iodine binding site 6 out of 38 in the Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I607

b:44.0
occ:0.25
 I A:IOD607 0.0 44.0 0.2
I A:IOD607 1.4 34.9 0.2
O A:HOH851 3.0 32.9 1.0
O A:HOH994 3.3 19.6 0.5
O A:HOH1064 3.4 35.7 1.0
NH1 A:ARG31 3.7 44.8 1.0
CE2 A:TYR331 3.7 28.2 1.0
O A:HOH1124 3.9 42.9 1.0
CD A:ARG527 4.1 28.8 1.0
CD2 A:TYR331 4.3 28.8 1.0
ND2 A:ASN333 4.4 37.8 1.0
CG A:ARG31 4.5 40.5 1.0
CB A:ASN333 4.7 29.7 1.0
CZ A:TYR331 4.7 27.6 1.0
OH A:TYR331 4.8 26.1 1.0
O A:HOH994 4.8 12.7 0.5
CZ A:ARG31 4.9 45.9 1.0
CB A:ARG31 4.9 36.8 1.0
CD A:ARG31 4.9 46.5 1.0
CG A:ARG527 5.0 28.3 1.0

Iodine binding site 7 out of 38 in 7vin

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Iodine binding site 7 out of 38 in the Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I608

b:49.8
occ:0.60
 O A:HOH1141 2.9 27.0 0.5
OG A:SER359 3.1 26.7 1.0
O A:HOH970 3.3 48.9 1.0
CB A:SER359 3.7 26.7 1.0
NZ A:LYS402 3.8 38.1 1.0
CD2 A:LEU361 4.1 38.5 1.0
O A:HOH1141 4.2 32.8 0.5
CB A:GLU373 4.2 33.0 1.0
CE A:LYS402 4.2 33.1 1.0
CG A:PRO367 4.3 43.2 1.0
CB A:ALA372 4.3 34.1 1.0
CB A:PRO367 4.4 43.0 1.0
CA A:PRO367 4.4 43.2 1.0
N A:GLU373 4.5 32.1 1.0
CA A:GLU373 4.7 29.5 1.0
CA A:SER359 4.8 26.1 1.0
C A:ALA372 4.8 31.2 1.0
CG A:GLU373 4.8 34.5 1.0
O A:ARG360 4.9 33.5 1.0
N A:PRO367 5.0 43.6 1.0
CD A:PRO367 5.0 43.8 1.0

Iodine binding site 8 out of 38 in 7vin

Go back to Iodine Binding Sites List in 7vin
Iodine binding site 8 out of 38 in the Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I609

b:23.2
occ:0.40
 I A:IOD609 0.0 23.2 0.4
I A:IOD609 1.5 22.7 0.4
CA A:GLY466 3.6 30.7 1.0
N A:LYS462 4.0 27.1 1.0
OG1 A:THR463 4.0 26.4 1.0
N A:GLY466 4.3 30.1 1.0
CA A:PRO461 4.3 28.4 1.0
N A:THR463 4.6 30.4 1.0
C A:PRO461 4.7 27.0 1.0
C A:GLY466 4.9 27.5 1.0
CA A:LYS462 5.0 29.1 1.0

Iodine binding site 9 out of 38 in 7vin

Go back to Iodine Binding Sites List in 7vin
Iodine binding site 9 out of 38 in the Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I609

b:22.7
occ:0.40
 I A:IOD609 0.0 22.7 0.4
I A:IOD609 1.5 23.2 0.4
N A:LYS462 3.3 27.1 1.0
OG1 A:THR463 3.3 26.4 1.0
N A:THR463 3.5 30.4 1.0
CA A:LYS462 3.9 29.1 1.0
CB A:LYS462 3.9 31.4 1.0
C A:LYS462 4.0 29.8 1.0
CG2 A:THR463 4.0 31.6 1.0
CB A:THR463 4.1 29.7 1.0
CA A:GLY466 4.2 30.7 1.0
C A:PRO461 4.3 27.0 1.0
CA A:THR463 4.4 30.0 1.0
CA A:PRO461 4.4 28.4 1.0
CG A:LYS462 4.5 31.2 1.0
N A:GLY466 4.6 30.1 1.0
O A:HOH978 4.9 45.9 1.0
O A:THR463 4.9 29.0 1.0

Iodine binding site 10 out of 38 in 7vin

Go back to Iodine Binding Sites List in 7vin
Iodine binding site 10 out of 38 in the Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I610

b:27.9
occ:0.55
 O A:HOH745 2.5 36.0 1.0
CG A:PRO375 3.9 19.0 1.0
NZ A:LYS420 4.0 24.2 1.0
CE1 A:HIS377 4.1 23.0 1.0
CB A:PRO375 4.2 18.2 1.0
ND1 A:HIS377 4.7 24.5 1.0
OE1 A:GLU416 4.8 22.1 1.0

Reference:

V.Viswanathan, N.Pandey, A.K.Singh, M.Sinha, R.P.Singh, P.Sharma, P.Kaur, S.Sharma, T.P.Singh. Structure of the Complex of Lactoperoxidase with Nitric Oxide Catalytic Product Nitrite at 1.89 A Resolution. To Be Published.
Page generated: Fri Nov 5 14:19:24 2021

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