Iodine in PDB 8a24: Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak
Enzymatic activity of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak
All present enzymatic activity of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak:
2.3.1.43;
Protein crystallography data
The structure of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak, PDB code: 8a24
was solved by
M.G.Diwo,
W.Blankenfeldt,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
70.89 /
2.36
|
|
Space group
|
P 31 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
81.852,
81.852,
68.21,
90,
90,
120
|
|
R / Rfree (%)
|
22.8 /
27.9
|
Iodine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
13;
Binding sites:
The binding sites of Iodine atom in the Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak
(pdb code 8a24). This binding sites where shown within
5.0 Angstroms radius around Iodine atom.
In total 13 binding sites of Iodine where determined in the
Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak, PDB code: 8a24:
Jump to Iodine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iodine binding site 1 out
of 13 in 8a24
Go back to
Iodine Binding Sites List in 8a24
Iodine binding site 1 out
of 13 in the Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak
 Mono view
 Stereo pair view
|
|
A full contact list of Iodine with other atoms in the I binding
site number 1 of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I401
b:59.5
occ:1.00
|
HD21
|
A:ASN58
|
2.7
|
51.4
|
1.0
|
|
H
|
A:LEU286
|
3.1
|
51.8
|
1.0
|
|
HB3
|
A:ALA285
|
3.3
|
49.1
|
1.0
|
|
HB
|
A:THR284
|
3.3
|
50.9
|
1.0
|
|
O
|
A:HOH508
|
3.4
|
51.0
|
1.0
|
|
H
|
A:ALA285
|
3.5
|
55.5
|
1.0
|
|
ND2
|
A:ASN58
|
3.5
|
42.8
|
1.0
|
|
HA
|
A:ASP273
|
3.6
|
81.0
|
1.0
|
|
HB2
|
A:LEU286
|
3.6
|
55.5
|
1.0
|
|
O
|
A:CYS272
|
3.8
|
61.6
|
1.0
|
|
N
|
A:LEU286
|
3.8
|
43.1
|
1.0
|
|
HG1
|
A:THR284
|
3.8
|
46.6
|
1.0
|
|
HD22
|
A:ASN58
|
4.0
|
51.4
|
1.0
|
|
HB3
|
A:LEU286
|
4.0
|
55.5
|
1.0
|
|
N
|
A:ALA285
|
4.1
|
46.2
|
1.0
|
|
OG1
|
A:THR284
|
4.1
|
38.8
|
1.0
|
|
CB
|
A:THR284
|
4.2
|
42.4
|
1.0
|
|
CB
|
A:LEU286
|
4.2
|
46.3
|
1.0
|
|
CB
|
A:ALA285
|
4.2
|
41.0
|
1.0
|
|
OD1
|
A:ASN58
|
4.3
|
40.8
|
1.0
|
|
CG
|
A:ASN58
|
4.4
|
44.5
|
1.0
|
|
C
|
A:CYS272
|
4.4
|
64.4
|
1.0
|
|
H
|
A:GLY274
|
4.4
|
76.2
|
1.0
|
|
CA
|
A:ASP273
|
4.5
|
67.5
|
1.0
|
|
CA
|
A:ALA285
|
4.5
|
43.0
|
1.0
|
|
HB2
|
A:ALA285
|
4.6
|
49.1
|
1.0
|
|
CA
|
A:LEU286
|
4.6
|
44.2
|
1.0
|
|
C
|
A:ALA285
|
4.6
|
41.8
|
1.0
|
|
N
|
A:ASP273
|
4.7
|
72.9
|
1.0
|
|
HG21
|
A:THR284
|
4.8
|
50.9
|
1.0
|
|
HB1
|
A:ALA285
|
4.9
|
49.1
|
1.0
|
|
HB2
|
A:CYS272
|
4.9
|
80.3
|
1.0
|
|
C
|
A:THR284
|
5.0
|
43.2
|
1.0
|
|
Iodine binding site 2 out
of 13 in 8a24
Go back to
Iodine Binding Sites List in 8a24
Iodine binding site 2 out
of 13 in the Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak
 Mono view
 Stereo pair view
|
|
A full contact list of Iodine with other atoms in the I binding
site number 2 of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I402
b:71.9
occ:1.00
|
H
|
A:GLU53
|
2.9
|
50.8
|
1.0
|
|
HG2
|
A:GLU53
|
3.0
|
62.3
|
1.0
|
|
HB3
|
A:SER48
|
3.2
|
53.8
|
1.0
|
|
HA
|
A:PHE52
|
3.5
|
52.8
|
1.0
|
|
HG3
|
A:GLU53
|
3.6
|
62.3
|
1.0
|
|
N
|
A:GLU53
|
3.7
|
42.4
|
1.0
|
|
CG
|
A:GLU53
|
3.7
|
51.9
|
1.0
|
|
HD3
|
A:PRO49
|
3.7
|
69.4
|
1.0
|
|
O
|
A:TYR51
|
3.8
|
45.2
|
1.0
|
|
CB
|
A:SER48
|
4.0
|
44.9
|
1.0
|
|
C
|
A:SER48
|
4.1
|
44.3
|
1.0
|
|
HA
|
A:GLU53
|
4.1
|
52.1
|
1.0
|
|
N
|
A:PRO49
|
4.1
|
44.2
|
1.0
|
|
HB2
|
A:SER48
|
4.2
|
53.8
|
1.0
|
|
HA
|
A:PRO49
|
4.2
|
60.5
|
1.0
|
|
O
|
A:SER48
|
4.2
|
49.1
|
1.0
|
|
O
|
A:HOH529
|
4.3
|
48.0
|
1.0
|
|
HB3
|
A:PRO49
|
4.3
|
64.7
|
1.0
|
|
CA
|
A:GLU53
|
4.4
|
43.4
|
1.0
|
|
CA
|
A:PHE52
|
4.4
|
44.0
|
1.0
|
|
CD
|
A:PRO49
|
4.4
|
57.9
|
1.0
|
|
HD1
|
A:PHE52
|
4.4
|
58.3
|
1.0
|
|
CA
|
A:SER48
|
4.5
|
48.2
|
1.0
|
|
C
|
A:PHE52
|
4.5
|
43.1
|
1.0
|
|
HA
|
A:SER48
|
4.6
|
57.9
|
1.0
|
|
CA
|
A:PRO49
|
4.6
|
50.4
|
1.0
|
|
CB
|
A:GLU53
|
4.7
|
42.5
|
1.0
|
|
CD
|
A:GLU53
|
4.8
|
65.0
|
1.0
|
|
OE2
|
A:GLU53
|
4.8
|
66.7
|
1.0
|
|
C
|
A:TYR51
|
4.9
|
44.6
|
1.0
|
|
CD1
|
A:PHE52
|
4.9
|
48.6
|
1.0
|
|
CB
|
A:PRO49
|
4.9
|
53.9
|
1.0
|
|
Iodine binding site 3 out
of 13 in 8a24
Go back to
Iodine Binding Sites List in 8a24
Iodine binding site 3 out
of 13 in the Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak
 Mono view
 Stereo pair view
|
|
A full contact list of Iodine with other atoms in the I binding
site number 3 of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I403
b:121.6
occ:1.00
|
O
|
A:PRO72
|
3.1
|
114.0
|
1.0
|
|
HB3
|
A:PHE71
|
3.2
|
84.3
|
1.0
|
|
HA
|
A:PHE71
|
3.2
|
84.7
|
1.0
|
|
HD2
|
A:PRO72
|
3.6
|
123.0
|
1.0
|
|
HD1
|
A:PHE71
|
3.6
|
113.4
|
1.0
|
|
CA
|
A:PHE71
|
3.7
|
70.6
|
1.0
|
|
C
|
A:PHE71
|
3.7
|
76.7
|
1.0
|
|
CB
|
A:PHE71
|
3.9
|
70.2
|
1.0
|
|
N
|
A:PRO72
|
3.9
|
98.5
|
1.0
|
|
C
|
A:PRO72
|
4.1
|
110.7
|
1.0
|
|
HB3
|
A:ASP74
|
4.1
|
145.3
|
1.0
|
|
CD
|
A:PRO72
|
4.2
|
102.5
|
1.0
|
|
O
|
A:PHE71
|
4.2
|
80.2
|
1.0
|
|
H
|
A:ASP74
|
4.4
|
138.8
|
1.0
|
|
CD1
|
A:PHE71
|
4.4
|
94.5
|
1.0
|
|
HB2
|
A:ASN73
|
4.5
|
136.5
|
1.0
|
|
HB2
|
A:PHE71
|
4.6
|
84.3
|
1.0
|
|
CA
|
A:PRO72
|
4.6
|
121.8
|
1.0
|
|
HD3
|
A:PRO72
|
4.7
|
123.0
|
1.0
|
|
CG
|
A:PHE71
|
4.7
|
79.1
|
1.0
|
|
O
|
A:ASP74
|
4.8
|
97.1
|
1.0
|
|
N
|
A:ASP74
|
4.8
|
115.7
|
1.0
|
|
NE2
|
A:HIS78
|
4.9
|
80.4
|
1.0
|
|
O
|
A:GLU308
|
5.0
|
103.8
|
1.0
|
|
CB
|
A:ASP74
|
5.0
|
121.1
|
1.0
|
|
Iodine binding site 4 out
of 13 in 8a24
Go back to
Iodine Binding Sites List in 8a24
Iodine binding site 4 out
of 13 in the Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak
 Mono view
 Stereo pair view
|
|
A full contact list of Iodine with other atoms in the I binding
site number 4 of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I404
b:59.8
occ:1.00
|
H
|
A:ASP81
|
2.7
|
51.9
|
1.0
|
|
HD21
|
A:ASN34
|
2.8
|
35.9
|
1.0
|
|
HB3
|
A:ASP81
|
3.3
|
42.0
|
1.0
|
|
O
|
A:LEU79
|
3.4
|
48.4
|
1.0
|
|
N
|
A:ASP81
|
3.6
|
43.2
|
1.0
|
|
ND2
|
A:ASN34
|
3.6
|
29.9
|
1.0
|
|
HA
|
A:LEU80
|
3.7
|
51.8
|
1.0
|
|
HB2
|
A:ASP81
|
4.0
|
42.0
|
1.0
|
|
CB
|
A:ASP81
|
4.0
|
35.0
|
1.0
|
|
HD22
|
A:ASN34
|
4.1
|
35.9
|
1.0
|
|
HG
|
A:LEU79
|
4.2
|
56.9
|
1.0
|
|
O
|
A:ASP81
|
4.2
|
43.4
|
1.0
|
|
CA
|
A:ASP81
|
4.3
|
37.0
|
1.0
|
|
C
|
A:LEU79
|
4.4
|
50.5
|
1.0
|
|
OD1
|
A:ASN34
|
4.4
|
32.2
|
1.0
|
|
CA
|
A:LEU80
|
4.4
|
43.2
|
1.0
|
|
CG
|
A:ASN34
|
4.4
|
34.6
|
1.0
|
|
C
|
A:LEU80
|
4.5
|
40.2
|
1.0
|
|
C
|
A:ASP81
|
4.7
|
39.5
|
1.0
|
|
HD23
|
A:LEU80
|
4.7
|
47.2
|
1.0
|
|
N
|
A:LEU80
|
4.9
|
44.7
|
1.0
|
|
HB3
|
A:LEU79
|
4.9
|
67.3
|
1.0
|
|
HD23
|
A:LEU79
|
5.0
|
58.4
|
1.0
|
|
Iodine binding site 5 out
of 13 in 8a24
Go back to
Iodine Binding Sites List in 8a24
Iodine binding site 5 out
of 13 in the Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak
 Mono view
 Stereo pair view
|
|
A full contact list of Iodine with other atoms in the I binding
site number 5 of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I405
b:80.5
occ:1.00
|
HG23
|
A:ILE290
|
3.2
|
48.3
|
1.0
|
|
HE1
|
A:TYR234
|
3.3
|
68.5
|
1.0
|
|
OE1
|
A:GLU293
|
3.4
|
56.5
|
1.0
|
|
HB2
|
A:GLU293
|
3.7
|
55.6
|
1.0
|
|
HA
|
A:ILE290
|
3.8
|
55.8
|
1.0
|
|
HG3
|
A:LYS294
|
3.8
|
55.5
|
1.0
|
|
HE2
|
A:LYS294
|
3.9
|
53.3
|
1.0
|
|
HZ2
|
A:LYS294
|
3.9
|
60.3
|
1.0
|
|
HG12
|
A:ILE290
|
3.9
|
56.7
|
1.0
|
|
HB3
|
A:GLU293
|
4.1
|
55.6
|
1.0
|
|
CG2
|
A:ILE290
|
4.1
|
40.2
|
1.0
|
|
CE1
|
A:TYR234
|
4.1
|
57.1
|
1.0
|
|
HD1
|
A:TYR234
|
4.2
|
68.0
|
1.0
|
|
CB
|
A:GLU293
|
4.3
|
46.4
|
1.0
|
|
HG21
|
A:ILE290
|
4.4
|
48.3
|
1.0
|
|
NZ
|
A:LYS294
|
4.5
|
50.2
|
1.0
|
|
HZ3
|
A:LYS294
|
4.5
|
60.3
|
1.0
|
|
HG2
|
A:LYS294
|
4.5
|
55.5
|
1.0
|
|
CD
|
A:GLU293
|
4.5
|
64.2
|
1.0
|
|
CA
|
A:ILE290
|
4.6
|
46.5
|
1.0
|
|
CG
|
A:LYS294
|
4.6
|
46.2
|
1.0
|
|
CD1
|
A:TYR234
|
4.6
|
56.7
|
1.0
|
|
O
|
A:ILE290
|
4.6
|
42.9
|
1.0
|
|
CE
|
A:LYS294
|
4.6
|
44.4
|
1.0
|
|
CB
|
A:ILE290
|
4.7
|
41.2
|
1.0
|
|
HG22
|
A:ILE290
|
4.7
|
48.3
|
1.0
|
|
CG1
|
A:ILE290
|
4.7
|
47.3
|
1.0
|
|
H
|
A:LYS294
|
5.0
|
48.0
|
1.0
|
|
Iodine binding site 6 out
of 13 in 8a24
Go back to
Iodine Binding Sites List in 8a24
Iodine binding site 6 out
of 13 in the Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak
 Mono view
 Stereo pair view
|
|
A full contact list of Iodine with other atoms in the I binding
site number 6 of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I406
b:57.3
occ:1.00
|
H
|
A:ARG103
|
2.9
|
56.0
|
1.0
|
|
HG2
|
A:ARG103
|
2.9
|
69.5
|
1.0
|
|
H
|
A:SER90
|
3.0
|
76.6
|
1.0
|
|
HG12
|
A:VAL89
|
3.1
|
74.3
|
1.0
|
|
HB3
|
A:ARG103
|
3.3
|
64.3
|
1.0
|
|
HB
|
A:THR101
|
3.4
|
69.7
|
1.0
|
|
HA
|
A:VAL89
|
3.5
|
74.6
|
1.0
|
|
HB3
|
A:LEU102
|
3.5
|
50.6
|
1.0
|
|
CG
|
A:ARG103
|
3.7
|
58.0
|
1.0
|
|
H
|
A:LEU102
|
3.8
|
58.6
|
1.0
|
|
N
|
A:ARG103
|
3.8
|
46.7
|
1.0
|
|
HD3
|
A:ARG103
|
3.8
|
82.1
|
1.0
|
|
N
|
A:SER90
|
3.8
|
63.8
|
1.0
|
|
HB3
|
A:SER90
|
3.9
|
102.6
|
1.0
|
|
HA3
|
A:GLY149
|
3.9
|
56.1
|
1.0
|
|
CB
|
A:ARG103
|
3.9
|
53.5
|
1.0
|
|
CG1
|
A:VAL89
|
4.0
|
61.9
|
1.0
|
|
HB2
|
A:SER90
|
4.1
|
102.6
|
1.0
|
|
HG13
|
A:VAL89
|
4.1
|
74.3
|
1.0
|
|
CD
|
A:ARG103
|
4.2
|
68.4
|
1.0
|
|
N
|
A:LEU102
|
4.2
|
48.9
|
1.0
|
|
CA
|
A:VAL89
|
4.3
|
62.2
|
1.0
|
|
HA2
|
A:GLY149
|
4.3
|
56.1
|
1.0
|
|
HE
|
A:ARG103
|
4.3
|
84.5
|
1.0
|
|
CB
|
A:SER90
|
4.4
|
85.5
|
1.0
|
|
HG22
|
A:VAL89
|
4.4
|
72.5
|
1.0
|
|
CB
|
A:THR101
|
4.4
|
58.1
|
1.0
|
|
CB
|
A:LEU102
|
4.4
|
42.2
|
1.0
|
|
CA
|
A:ARG103
|
4.5
|
51.2
|
1.0
|
|
HG3
|
A:ARG103
|
4.5
|
69.5
|
1.0
|
|
CA
|
A:GLY149
|
4.5
|
46.7
|
1.0
|
|
C
|
A:VAL89
|
4.6
|
57.5
|
1.0
|
|
CB
|
A:VAL89
|
4.7
|
62.1
|
1.0
|
|
CA
|
A:LEU102
|
4.7
|
48.7
|
1.0
|
|
HG11
|
A:VAL89
|
4.7
|
74.3
|
1.0
|
|
NE
|
A:ARG103
|
4.7
|
70.4
|
1.0
|
|
C
|
A:LEU102
|
4.7
|
46.7
|
1.0
|
|
CA
|
A:SER90
|
4.7
|
70.2
|
1.0
|
|
HB2
|
A:ARG103
|
4.8
|
64.3
|
1.0
|
|
O
|
A:GLY149
|
4.8
|
37.6
|
1.0
|
|
HA
|
A:ARG103
|
4.8
|
61.5
|
1.0
|
|
HD23
|
A:LEU102
|
4.8
|
55.1
|
1.0
|
|
HG
|
A:SER153
|
4.9
|
56.5
|
1.0
|
|
O
|
A:GLY88
|
4.9
|
51.3
|
1.0
|
|
HA
|
A:THR101
|
4.9
|
66.8
|
1.0
|
|
HB2
|
A:LEU102
|
5.0
|
50.6
|
1.0
|
|
HG22
|
A:THR101
|
5.0
|
77.9
|
1.0
|
|
C
|
A:THR101
|
5.0
|
49.9
|
1.0
|
|
C
|
A:GLY149
|
5.0
|
42.6
|
1.0
|
|
HG1
|
A:THR101
|
5.0
|
62.3
|
1.0
|
|
Iodine binding site 7 out
of 13 in 8a24
Go back to
Iodine Binding Sites List in 8a24
Iodine binding site 7 out
of 13 in the Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak
 Mono view
 Stereo pair view
|
|
A full contact list of Iodine with other atoms in the I binding
site number 7 of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I407
b:103.0
occ:1.00
|
HB2
|
A:ALA68
|
3.2
|
71.3
|
1.0
|
|
HA
|
A:ARG65
|
3.5
|
61.2
|
1.0
|
|
HG2
|
A:ARG65
|
3.5
|
56.8
|
1.0
|
|
HG2
|
A:PRO60
|
3.8
|
58.7
|
1.0
|
|
CB
|
A:ALA68
|
3.8
|
59.4
|
1.0
|
|
HB3
|
A:ALA68
|
3.9
|
71.3
|
1.0
|
|
HB1
|
A:ALA68
|
3.9
|
71.3
|
1.0
|
|
HB3
|
A:PRO60
|
3.9
|
54.8
|
1.0
|
|
HB3
|
A:GLU64
|
4.0
|
50.2
|
1.0
|
|
HB2
|
A:PRO60
|
4.2
|
54.8
|
1.0
|
|
CA
|
A:ARG65
|
4.3
|
51.0
|
1.0
|
|
CB
|
A:PRO60
|
4.3
|
45.6
|
1.0
|
|
CG
|
A:ARG65
|
4.4
|
47.4
|
1.0
|
|
O
|
A:GLU64
|
4.4
|
40.8
|
1.0
|
|
CG
|
A:PRO60
|
4.4
|
48.9
|
1.0
|
|
HG3
|
A:PRO60
|
4.5
|
58.7
|
1.0
|
|
N
|
A:ARG65
|
4.5
|
40.3
|
1.0
|
|
C
|
A:GLU64
|
4.5
|
42.1
|
1.0
|
|
HG3
|
A:ARG65
|
4.5
|
56.8
|
1.0
|
|
CB
|
A:GLU64
|
4.8
|
41.8
|
1.0
|
|
HB2
|
A:GLU64
|
4.8
|
50.2
|
1.0
|
|
H
|
A:ARG65
|
4.9
|
48.4
|
1.0
|
|
CB
|
A:ARG65
|
4.9
|
44.9
|
1.0
|
|
Iodine binding site 8 out
of 13 in 8a24
Go back to
Iodine Binding Sites List in 8a24
Iodine binding site 8 out
of 13 in the Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak
 Mono view
 Stereo pair view
|
|
A full contact list of Iodine with other atoms in the I binding
site number 8 of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I408
b:116.5
occ:1.00
|
HA
|
A:LYS42
|
3.2
|
49.0
|
1.0
|
|
HB3
|
A:LYS42
|
3.9
|
50.8
|
1.0
|
|
CA
|
A:LYS42
|
4.0
|
40.8
|
1.0
|
|
HG3
|
A:LYS42
|
4.0
|
50.3
|
1.0
|
|
O
|
A:HOH526
|
4.0
|
41.3
|
1.0
|
|
ND1
|
A:HIS43
|
4.3
|
47.6
|
1.0
|
|
CB
|
A:LYS42
|
4.3
|
42.3
|
1.0
|
|
C
|
A:LYS42
|
4.5
|
38.5
|
1.0
|
|
CE1
|
A:HIS43
|
4.5
|
51.2
|
1.0
|
|
HE1
|
A:HIS43
|
4.5
|
61.4
|
1.0
|
|
CG
|
A:LYS42
|
4.5
|
41.9
|
1.0
|
|
HG2
|
A:LYS42
|
4.6
|
50.3
|
1.0
|
|
O
|
A:LYS42
|
4.7
|
47.4
|
1.0
|
|
CG
|
A:HIS43
|
4.9
|
48.4
|
1.0
|
|
HB2
|
A:HIS43
|
4.9
|
50.9
|
1.0
|
|
Iodine binding site 9 out
of 13 in 8a24
Go back to
Iodine Binding Sites List in 8a24
Iodine binding site 9 out
of 13 in the Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak
 Mono view
 Stereo pair view
|
|
A full contact list of Iodine with other atoms in the I binding
site number 9 of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I409
b:93.6
occ:1.00
|
HE2
|
A:LYS289
|
3.0
|
82.6
|
1.0
|
|
O
|
A:HOH538
|
3.2
|
45.4
|
1.0
|
|
HH22
|
A:ARG65
|
3.2
|
78.2
|
1.0
|
|
HA
|
A:LEU286
|
3.5
|
53.1
|
1.0
|
|
HB1
|
A:ALA285
|
3.6
|
49.1
|
1.0
|
|
HH12
|
A:ARG65
|
3.7
|
68.5
|
1.0
|
|
NH2
|
A:ARG65
|
3.7
|
65.2
|
1.0
|
|
HB3
|
A:ALA285
|
3.8
|
49.1
|
1.0
|
|
CE
|
A:LYS289
|
3.9
|
68.9
|
1.0
|
|
HD3
|
A:LYS289
|
4.0
|
73.6
|
1.0
|
|
NH1
|
A:ARG65
|
4.1
|
57.0
|
1.0
|
|
HB2
|
A:LYS289
|
4.1
|
65.3
|
1.0
|
|
O
|
A:ALA285
|
4.1
|
39.4
|
1.0
|
|
C
|
A:ALA285
|
4.2
|
41.8
|
1.0
|
|
HH21
|
A:ARG65
|
4.2
|
78.2
|
1.0
|
|
CB
|
A:ALA285
|
4.2
|
41.0
|
1.0
|
|
CZ
|
A:ARG65
|
4.2
|
54.3
|
1.0
|
|
N
|
A:LEU286
|
4.2
|
43.1
|
1.0
|
|
CA
|
A:LEU286
|
4.3
|
44.2
|
1.0
|
|
HB2
|
A:LEU286
|
4.4
|
55.5
|
1.0
|
|
HD13
|
A:LEU286
|
4.4
|
54.4
|
1.0
|
|
HZ3
|
A:LYS289
|
4.4
|
85.3
|
1.0
|
|
HE3
|
A:LYS289
|
4.5
|
82.6
|
1.0
|
|
HZ1
|
A:LYS289
|
4.5
|
85.3
|
1.0
|
|
O
|
A:HOH534
|
4.5
|
64.7
|
1.0
|
|
HB3
|
A:LYS289
|
4.5
|
65.3
|
1.0
|
|
H
|
A:LEU286
|
4.5
|
51.8
|
1.0
|
|
CD
|
A:LYS289
|
4.5
|
61.4
|
1.0
|
|
NZ
|
A:LYS289
|
4.6
|
71.1
|
1.0
|
|
HH11
|
A:ARG65
|
4.7
|
68.5
|
1.0
|
|
CB
|
A:LYS289
|
4.7
|
54.4
|
1.0
|
|
CA
|
A:ALA285
|
4.8
|
43.0
|
1.0
|
|
CB
|
A:LEU286
|
4.9
|
46.3
|
1.0
|
|
HB2
|
A:ALA285
|
5.0
|
49.1
|
1.0
|
|
HD12
|
A:LEU286
|
5.0
|
54.4
|
1.0
|
|
Iodine binding site 10 out
of 13 in 8a24
Go back to
Iodine Binding Sites List in 8a24
Iodine binding site 10 out
of 13 in the Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak
 Mono view
 Stereo pair view
|
|
A full contact list of Iodine with other atoms in the I binding
site number 10 of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Iodide Soak within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I410
b:96.7
occ:1.00
|
HD21
|
A:ASN130
|
2.8
|
62.4
|
1.0
|
|
HB2
|
A:SER255
|
2.8
|
93.5
|
1.0
|
|
HG
|
A:LEU257
|
3.0
|
73.6
|
1.0
|
|
H
|
A:LEU257
|
3.2
|
71.2
|
1.0
|
|
HD12
|
A:LEU257
|
3.2
|
64.1
|
1.0
|
|
HB2
|
A:LEU257
|
3.3
|
78.6
|
1.0
|
|
HA3
|
A:GLY86
|
3.5
|
53.3
|
1.0
|
|
HA2
|
A:GLY86
|
3.6
|
53.3
|
1.0
|
|
ND2
|
A:ASN130
|
3.6
|
52.0
|
1.0
|
|
CG
|
A:LEU257
|
3.7
|
61.4
|
1.0
|
|
H
|
A:VAL256
|
3.7
|
69.4
|
1.0
|
|
H
|
A:PHE99
|
3.7
|
59.4
|
1.0
|
|
CB
|
A:SER255
|
3.8
|
77.9
|
1.0
|
|
O
|
A:GLY86
|
3.8
|
46.4
|
1.0
|
|
HA
|
A:VAL98
|
3.8
|
67.6
|
1.0
|
|
CD1
|
A:LEU257
|
3.9
|
53.4
|
1.0
|
|
HB2
|
A:PHE99
|
3.9
|
57.2
|
1.0
|
|
CB
|
A:LEU257
|
4.0
|
65.5
|
1.0
|
|
O
|
A:HOH517
|
4.0
|
54.9
|
1.0
|
|
CA
|
A:GLY86
|
4.0
|
44.4
|
1.0
|
|
N
|
A:LEU257
|
4.0
|
59.3
|
1.0
|
|
HD22
|
A:ASN130
|
4.1
|
62.4
|
1.0
|
|
HD11
|
A:LEU257
|
4.1
|
64.1
|
1.0
|
|
HB3
|
A:SER255
|
4.1
|
93.5
|
1.0
|
|
HG
|
A:SER255
|
4.1
|
103.8
|
1.0
|
|
N
|
A:PHE99
|
4.2
|
49.5
|
1.0
|
|
HB
|
A:VAL256
|
4.2
|
62.8
|
1.0
|
|
N
|
A:VAL256
|
4.3
|
57.9
|
1.0
|
|
OD1
|
A:ASN130
|
4.4
|
55.6
|
1.0
|
|
OG
|
A:SER255
|
4.4
|
86.5
|
1.0
|
|
N
|
A:VAL98
|
4.4
|
61.0
|
1.0
|
|
C
|
A:GLY86
|
4.4
|
43.9
|
1.0
|
|
CG
|
A:ASN130
|
4.4
|
47.0
|
1.0
|
|
CA
|
A:VAL98
|
4.4
|
56.3
|
1.0
|
|
HB3
|
A:PHE99
|
4.5
|
57.2
|
1.0
|
|
HA
|
A:SER255
|
4.6
|
101.8
|
1.0
|
|
CB
|
A:PHE99
|
4.6
|
47.7
|
1.0
|
|
CA
|
A:LEU257
|
4.6
|
61.7
|
1.0
|
|
C
|
A:VAL98
|
4.6
|
53.0
|
1.0
|
|
CA
|
A:SER255
|
4.7
|
84.9
|
1.0
|
|
HD13
|
A:LEU257
|
4.7
|
64.1
|
1.0
|
|
HB3
|
A:LEU257
|
4.8
|
78.6
|
1.0
|
|
C
|
A:SER255
|
4.9
|
68.7
|
1.0
|
|
H
|
A:VAL98
|
4.9
|
73.2
|
1.0
|
|
CA
|
A:PHE99
|
4.9
|
48.9
|
1.0
|
|
C
|
A:VAL256
|
5.0
|
56.0
|
1.0
|
|
CA
|
A:VAL256
|
5.0
|
56.5
|
1.0
|
|
Reference:
M.Hiller,
M.G.Diwo,
C.Lang,
S.Wamp,
W.Blankenfeldt,
A.Flieger.
Structure-Function Relationship Underpins Disulfide Loop Cleavage-Dependent Activation of Legionella Pneumophila Lysophosholipase A Plaa and Affects Bacterial Cell Integrity To Be Published.
Page generated: Thu Jul 27 17:43:57 2023
|
