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Iodine in PDB 1a6w: B1-8 Fv Fragment Complexed with A (4-Hydroxy-5-Iodo-3- Nitrophenyl) Acetate Compound

Protein crystallography data

The structure of B1-8 Fv Fragment Complexed with A (4-Hydroxy-5-Iodo-3- Nitrophenyl) Acetate Compound, PDB code: 1a6w was solved by T.Simon, K.Henrick, M.Hirshberg, G.Winter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.270, 83.510, 40.230, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / n/a

Iodine Binding Sites:

The binding sites of Iodine atom in the B1-8 Fv Fragment Complexed with A (4-Hydroxy-5-Iodo-3- Nitrophenyl) Acetate Compound (pdb code 1a6w). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the B1-8 Fv Fragment Complexed with A (4-Hydroxy-5-Iodo-3- Nitrophenyl) Acetate Compound, PDB code: 1a6w:

Iodine binding site 1 out of 1 in 1a6w

Go back to Iodine Binding Sites List in 1a6w
Iodine binding site 1 out of 1 in the B1-8 Fv Fragment Complexed with A (4-Hydroxy-5-Iodo-3- Nitrophenyl) Acetate Compound


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of B1-8 Fv Fragment Complexed with A (4-Hydroxy-5-Iodo-3- Nitrophenyl) Acetate Compound within 5.0Å range:
probe atom residue distance (Å) B Occ
H:I430

b:31.8
occ:1.00
I5 H:NIP430 0.0 31.8 1.0
C5 H:NIP430 2.1 27.2 1.0
C4 H:NIP430 3.1 27.5 1.0
C6 H:NIP430 3.1 25.9 1.0
O4 H:NIP430 3.2 25.4 1.0
NH2 H:ARG350 4.2 23.4 1.0
OH H:TYR401 4.2 18.2 0.5
C1 H:NIP430 4.4 25.5 1.0
C3 H:NIP430 4.4 26.6 1.0
CH2 H:TRP333 4.4 24.3 1.0
CE1 H:TYR401 4.4 17.2 0.5
CZ3 H:TRP333 4.5 25.4 1.0
CZ2 L:TRP93 4.5 19.7 1.0
CE H:LYS359 4.5 28.3 0.5
CZ H:TYR401 4.7 17.5 0.5
C2 H:NIP430 4.9 24.0 1.0

Reference:

T.Simon, K.Henrick, M.Hirshberg, G.Winter. X-Ray Structures of Fv Fragment and Its (4-Hydroxy-3-Nitrophenyl)Acetate Complex of Murine B1-8 Antibody To Be Published.
Page generated: Sun Dec 13 19:19:02 2020

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