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Iodine in PDB 1a6y: Reverba Orphan Nuclear Receptor/Dna Complex

Protein crystallography data

The structure of Reverba Orphan Nuclear Receptor/Dna Complex, PDB code: 1a6y was solved by Q.Zhao, S.Khorasanizadeh, F.Rastinejad, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.30
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 38.670, 45.690, 47.950, 75.16, 80.64, 85.58
R / Rfree (%) 19.2 / 28.8

Other elements in 1a6y:

The structure of Reverba Orphan Nuclear Receptor/Dna Complex also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Iodine Binding Sites:

The binding sites of Iodine atom in the Reverba Orphan Nuclear Receptor/Dna Complex (pdb code 1a6y). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Reverba Orphan Nuclear Receptor/Dna Complex, PDB code: 1a6y:

Iodine binding site 1 out of 1 in 1a6y

Go back to Iodine Binding Sites List in 1a6y
Iodine binding site 1 out of 1 in the Reverba Orphan Nuclear Receptor/Dna Complex


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Reverba Orphan Nuclear Receptor/Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:I612

b:41.1
occ:1.00
I5 C:5IU612 0.0 41.1 1.0
C5 C:5IU612 1.4 37.5 1.0
C4 C:5IU612 2.4 27.7 1.0
C6 C:5IU612 2.5 38.5 1.0
O4 C:5IU612 2.8 55.1 1.0
C2' C:DC611 3.2 34.6 1.0
C6 C:DC611 3.4 17.9 1.0
N3 C:5IU612 3.6 33.6 1.0
N1 C:DC611 3.7 28.1 1.0
C5 C:DC611 3.7 16.4 1.0
O C:HOH734 3.7 32.4 1.0
N1 C:5IU612 3.7 29.4 1.0
O C:HOH735 3.9 30.6 1.0
C1' C:DC611 4.0 23.6 1.0
OP2 C:5IU612 4.1 10.6 1.0
C2 C:5IU612 4.2 32.6 1.0
C4 C:DC611 4.3 23.5 1.0
O C:HOH789 4.3 46.1 1.0
C2 C:DC611 4.3 32.5 1.0
C3' C:DC611 4.4 30.4 1.0
N3 C:DC611 4.6 32.0 1.0
O C:HOH809 4.6 47.9 1.0
O D:HOH740 4.9 29.6 1.0

Reference:

Q.Zhao, S.Khorasanizadeh, Y.Miyoshi, M.A.Lazar, F.Rastinejad. Structural Elements of An Orphan Nuclear Receptor-Dna Complex. Mol.Cell V. 1 849 1998.
ISSN: ISSN 1097-2765
PubMed: 9660968
DOI: 10.1016/S1097-2765(00)80084-2
Page generated: Sun Dec 13 19:19:02 2020

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