Iodine in PDB 1b2k: Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals

All present enzymatic activity of Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals:
3.2.1.17;

The structure of Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals, PDB code: 1b2k was solved by M.C.Vaney, I.Broutin, M.Ries-Kautt, A.Ducruix, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	27.730, 62.790, 59.840, 90.00, 90.10, 90.00
R / Rfree (%)	19.8 / 23.7

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 19;

Binding sites:

The binding sites of Iodine atom in the Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals (pdb code 1b2k). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 19 binding sites of Iodine where determined in the Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals, PDB code: 1b2k:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 19 in the Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals within 5.0Å range: probe atom residue distance (Å) B Occ A:I403 b:21.8 occ:0.58 O A:GLY71 3.6 20.2 1.0 CA A:SER72 4.0 18.2 1.0 CB A:SER72 4.0 19.1 1.0 C A:GLY71 4.1 19.5 1.0 OG A:SER72 4.2 21.3 1.0 N A:SER72 4.3 19.1 1.0 O A:HOH598 4.4 26.0 1.0

Iodine binding site 2 out of 19 in the Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals within 5.0Å range: probe atom residue distance (Å) B Occ A:I404 b:20.0 occ:1.00 NE1 A:TRP63 3.6 8.8 1.0 O A:HOH519 3.6 17.5 1.0 O A:HOH528 4.0 17.5 1.0 NH2 A:ARG61 4.0 28.6 1.0 CD1 A:TRP63 4.4 7.9 1.0 CB A:ASN59 4.5 11.5 1.0 CE2 A:TRP63 4.6 8.2 1.0 CD1 A:TRP62 4.7 12.7 1.0 CZ2 A:TRP63 4.9 8.3 1.0

Iodine binding site 3 out of 19 in the Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals within 5.0Å range: probe atom residue distance (Å) B Occ A:I406 b:24.3 occ:0.50 O A:HOH731 3.1 40.1 1.0 O A:HOH568 3.2 25.9 1.0 O A:HOH765 3.7 47.5 1.0 NZ A:LYS33 3.8 15.2 1.0 CE2 A:PHE38 3.9 9.3 1.0 CZ3 A:TRP123 4.1 10.6 1.0 O A:HOH754 4.1 39.8 1.0 CD A:LYS33 4.1 11.3 1.0 CE A:LYS33 4.1 12.4 1.0 O A:HOH686 4.3 36.6 1.0 CD A:ARG5 4.4 8.4 1.0 O A:HOH650 4.5 29.6 1.0 CZ A:PHE38 4.6 9.4 1.0 CB A:ARG5 4.7 9.3 1.0 NE A:ARG5 4.8 9.0 1.0 CH2 A:TRP123 4.8 12.1 1.0 CD2 A:PHE38 4.9 9.8 1.0 CE3 A:TRP123 4.9 10.6 1.0

Iodine binding site 4 out of 19 in the Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals within 5.0Å range: probe atom residue distance (Å) B Occ A:I407 b:21.6 occ:0.55 OG A:SER24 3.3 14.3 1.0 N A:GLY26 3.4 7.4 1.0 CB A:SER24 3.6 12.7 1.0 CD1 A:ILE124 3.6 17.9 1.0 CA A:GLN121 3.9 12.9 1.0 CA A:GLY26 3.9 6.4 1.0 CG A:GLN121 4.0 18.4 1.0 CG1 A:ILE124 4.2 15.4 1.0 N A:LEU25 4.3 11.3 1.0 N A:GLN121 4.3 12.5 1.0 CB A:GLN121 4.4 15.6 1.0 O A:VAL120 4.4 11.8 1.0 C A:SER24 4.5 11.7 1.0 C A:LEU25 4.6 8.4 1.0 C A:VAL120 4.6 12.2 1.0 CA A:SER24 4.6 12.1 1.0 CG2 A:VAL120 4.6 11.3 1.0 CA A:LEU25 4.8 10.4 1.0 CB A:LEU25 4.8 10.5 1.0 CG2 A:ILE124 5.0 14.8 1.0 C A:GLN121 5.0 12.3 1.0

Iodine binding site 5 out of 19 in the Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals within 5.0Å range: probe atom residue distance (Å) B Occ A:I409 b:23.4 occ:0.46 O A:HOH660 3.8 25.9 1.0 CD A:GLN41 4.7 18.5 1.0 CG A:GLN41 4.8 16.8 1.0 OE1 A:GLN41 4.9 21.0 1.0

Iodine binding site 6 out of 19 in the Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals within 5.0Å range: probe atom residue distance (Å) B Occ A:I410 b:25.3 occ:0.48 O A:HOH538 3.3 17.6 1.0 O A:HOH614 3.6 33.2 1.0 CG1 A:ILE88 3.8 8.3 1.0 N A:ILE88 3.9 8.4 1.0 OD1 A:ASP87 4.3 8.5 1.0 O A:SER86 4.3 10.8 1.0 CB A:ALA11 4.3 10.3 1.0 CZ A:PHE3 4.3 12.1 1.0 CA A:ASP87 4.3 9.5 1.0 O B:HOH643 4.4 30.1 1.0 NE2 A:HIS15 4.5 16.9 1.0 CD1 A:ILE88 4.5 9.0 1.0 CG2 A:ILE88 4.5 8.5 1.0 CB A:ILE88 4.6 7.2 1.0 C A:ASP87 4.6 8.6 1.0 CE2 A:PHE3 4.7 12.3 1.0 CA A:ILE88 4.8 7.2 1.0

Iodine binding site 7 out of 19 in the Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals within 5.0Å range: probe atom residue distance (Å) B Occ A:I413 b:26.4 occ:1.00 N A:SER81 3.7 8.5 1.0 O A:HOH664 3.8 33.6 1.0 CA A:ASP66 3.9 16.4 1.0 O A:ASN65 3.9 11.9 1.0 CB A:SER81 4.0 8.4 1.0 N A:CYS80 4.0 7.5 1.0 CB A:CYS80 4.2 7.9 1.0 C A:ASP66 4.2 17.6 1.0 OG A:SER81 4.3 10.2 1.0 O A:ASP66 4.3 17.7 1.0 CA A:SER81 4.4 8.8 1.0 CA A:CYS80 4.4 7.9 1.0 C A:CYS80 4.5 8.1 1.0 CB A:ASP66 4.5 17.8 1.0 C A:PRO79 4.8 6.4 1.0 CB A:PRO79 4.8 6.7 1.0 C A:ASN65 4.8 12.2 1.0 N A:ASP66 4.8 14.2 1.0 N A:GLY67 5.0 18.4 1.0

Iodine binding site 8 out of 19 in the Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals within 5.0Å range: probe atom residue distance (Å) B Occ A:I415 b:28.3 occ:0.34 NE1 A:TRP62 3.6 14.1 1.0 NE A:ARG61 4.1 27.1 1.0 CD1 A:TRP62 4.2 12.7 1.0 NH2 A:ARG61 4.3 28.6 1.0 CZ A:ARG61 4.6 27.6 1.0 CE2 A:TRP62 4.8 14.3 1.0

Iodine binding site 9 out of 19 in the Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals within 5.0Å range: probe atom residue distance (Å) B Occ A:I416 b:42.8 occ:0.29 I A:IOD416 0.0 42.8 0.3 I A:IOD416 1.8 30.6 0.3 I A:IOD416 2.0 31.9 0.3 O A:HOH592 4.2 33.9 1.0 CE1 A:TYR20 4.6 14.7 1.0 NE A:ARG21 4.7 35.1 1.0 CD1 A:TYR20 5.0 15.2 1.0

Iodine binding site 10 out of 19 in the Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals within 5.0Å range: probe atom residue distance (Å) B Occ A:I416 b:30.6 occ:0.26 I A:IOD416 0.0 30.6 0.3 I A:IOD416 1.3 31.9 0.3 I A:IOD416 1.8 42.8 0.3 O A:HOH592 3.2 33.9 1.0 CD1 A:TYR20 4.3 15.2 1.0 CE1 A:TYR20 4.5 14.7 1.0 N A:ARG21 4.7 19.3 1.0 O A:HOH600 4.8 29.0 1.0

M.C.Vaney, I.Broutin, P.Retailleau, A.Douangamath, S.Lafont, C.Hamiaux, T.Prange, A.Ducruix, M.Ries-Kautt. Structural Effects of Monovalent Anions on Polymorphic Lysozyme Crystals. Acta Crystallogr.,Sect.D V. 57 929 2001.
ISSN: ISSN 0907-4449
PubMed: 11418760
DOI: 10.1107/S0907444901004504