Atomistry » Iodine » PDB 1gjd-1lij » 1hdy
Atomistry »
  Iodine »
    PDB 1gjd-1lij »
      1hdy »

Iodine in PDB 1hdy: Three-Dimensional Structures of Three Human Alcohol Dehydrogenase Variants: Correlations with Their Functional Differences

Enzymatic activity of Three-Dimensional Structures of Three Human Alcohol Dehydrogenase Variants: Correlations with Their Functional Differences

All present enzymatic activity of Three-Dimensional Structures of Three Human Alcohol Dehydrogenase Variants: Correlations with Their Functional Differences:
1.1.1.1;

Protein crystallography data

The structure of Three-Dimensional Structures of Three Human Alcohol Dehydrogenase Variants: Correlations with Their Functional Differences, PDB code: 1hdy was solved by T.D.Hurley, L.M.Amzel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 7.00 / 2.50
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 54.360, 44.890, 93.850, 92.65, 103.21, 68.77
R / Rfree (%) 18.5 / n/a

Other elements in 1hdy:

The structure of Three-Dimensional Structures of Three Human Alcohol Dehydrogenase Variants: Correlations with Their Functional Differences also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 4 atoms

Iodine Binding Sites:

The binding sites of Iodine atom in the Three-Dimensional Structures of Three Human Alcohol Dehydrogenase Variants: Correlations with Their Functional Differences (pdb code 1hdy). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Three-Dimensional Structures of Three Human Alcohol Dehydrogenase Variants: Correlations with Their Functional Differences, PDB code: 1hdy:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 1hdy

Go back to Iodine Binding Sites List in 1hdy
Iodine binding site 1 out of 2 in the Three-Dimensional Structures of Three Human Alcohol Dehydrogenase Variants: Correlations with Their Functional Differences


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Three-Dimensional Structures of Three Human Alcohol Dehydrogenase Variants: Correlations with Their Functional Differences within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I378

b:34.5
occ:1.00
I4 A:PYZ378 0.0 34.5 1.0
C4 A:PYZ378 2.1 34.7 1.0
C3 A:PYZ378 3.1 31.8 1.0
C5 A:PYZ378 3.1 37.5 1.0
CD1 A:LEU116 3.9 20.1 1.0
CD2 A:LEU116 4.0 22.4 1.0
CE1 A:PHE93 4.0 3.8 1.0
CG2 A:THR48 4.1 29.8 1.0
N2 A:PYZ378 4.2 29.4 1.0
CD1 A:PHE93 4.2 2.0 1.0
CD1 A:LEU141 4.2 13.5 1.0
N1 A:PYZ378 4.2 36.8 1.0
CG A:LEU116 4.5 19.5 1.0
CD2 A:LEU141 4.5 15.1 1.0
CB A:LEU116 4.9 21.4 1.0
CZ A:PHE93 4.9 13.6 1.0
CG A:LEU141 5.0 9.9 1.0

Iodine binding site 2 out of 2 in 1hdy

Go back to Iodine Binding Sites List in 1hdy
Iodine binding site 2 out of 2 in the Three-Dimensional Structures of Three Human Alcohol Dehydrogenase Variants: Correlations with Their Functional Differences


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Three-Dimensional Structures of Three Human Alcohol Dehydrogenase Variants: Correlations with Their Functional Differences within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I378

b:33.5
occ:1.00
I4 B:PYZ378 0.0 33.5 1.0
C4 B:PYZ378 2.0 22.8 1.0
C3 B:PYZ378 3.0 23.5 1.0
C5 B:PYZ378 3.1 23.3 1.0
CD2 B:LEU116 4.1 22.2 1.0
CD1 B:LEU116 4.1 25.7 1.0
CD1 B:LEU141 4.1 17.4 1.0
CG2 B:THR48 4.1 15.3 1.0
CD2 B:LEU141 4.2 21.9 1.0
N2 B:PYZ378 4.2 17.2 1.0
N1 B:PYZ378 4.2 23.4 1.0
CD1 B:PHE93 4.4 26.4 1.0
CG B:LEU116 4.6 26.9 1.0
CE1 B:PHE93 4.6 28.2 1.0
CG B:LEU141 4.7 20.1 1.0
OG1 B:THR48 4.8 13.8 1.0
CG2 B:VAL318 4.9 15.5 1.0
CB B:LEU116 5.0 27.4 1.0

Reference:

T.D.Hurley, W.F.Bosron, C.L.Stone, L.M.Amzel. Structures of Three Human Beta Alcohol Dehydrogenase Variants. Correlations with Their Functional Differences. J.Mol.Biol. V. 239 415 1994.
ISSN: ISSN 0022-2836
PubMed: 8201622
DOI: 10.1006/JMBI.1994.1382
Page generated: Sun Aug 11 10:00:23 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy