Iodine in PDB 1jzv: Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna

The structure of Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna, PDB code: 1jzv was solved by Y.Xiong, C.Sudarsanakumar, J.Deng, B.Pan, M.Sundaralingam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.70
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	45.800, 45.800, 89.650, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / 23.3

The structure of Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna also contains other interesting chemical elements:

Bromine	(Br)	2 atoms
Magnesium	(Mg)	1 atom

The binding sites of Iodine atom in the Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna (pdb code 1jzv). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna, PDB code: 1jzv:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in the Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:I16 b:21.7 occ:1.00 I B:5IC16 0.0 21.7 1.0 C5 B:5IC16 1.8 21.1 1.0 C6 B:5IC16 2.8 20.9 1.0 C4 B:5IC16 2.8 21.0 1.0 O B:HOH308 2.9 25.9 1.0 N4 B:5IC16 3.1 21.1 1.0 O B:HOH344 3.6 32.6 1.0 N7 B:G15 3.7 20.4 1.0 OP2 B:5IC16 3.7 23.1 1.0 C8 B:G15 3.7 19.2 1.0 C5 B:G15 3.8 18.6 1.0 N9 B:G15 3.8 17.8 1.0 C4 B:G15 3.9 17.6 1.0 O B:HOH377 4.0 42.4 1.0 O B:HOH335 4.0 27.3 1.0 N1 B:5IC16 4.1 21.5 1.0 N3 B:5IC16 4.1 20.9 1.0 C3' B:G15 4.1 21.1 1.0 C2' B:G15 4.3 18.5 1.0 C6 B:G15 4.5 18.5 1.0 O5' B:5IC16 4.5 22.1 1.0 N3 B:G15 4.6 18.5 1.0 P B:5IC16 4.6 22.2 1.0 C2 B:5IC16 4.6 21.3 1.0 C1' B:G15 4.6 18.9 1.0 O B:HOH334 4.7 34.0 1.0 O5' B:G15 4.8 21.7 1.0 O3' B:G15 4.9 19.3 1.0 N4 B:C17 5.0 20.6 1.0

Iodine binding site 2 out of 2 in the Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna within 5.0Å range: probe atom residue distance (Å) B Occ D:I36 b:23.3 occ:1.00 I D:5IC36 0.0 23.3 1.0 C5 D:5IC36 1.8 22.0 1.0 C6 D:5IC36 2.9 22.1 1.0 C4 D:5IC36 2.9 19.9 1.0 N4 D:5IC36 3.1 20.4 1.0 O D:HOH348 3.6 33.5 1.0 N7 D:G35 3.7 16.9 1.0 C8 D:G35 3.7 18.4 1.0 OP2 D:5IC36 3.8 22.3 1.0 O D:HOH320 3.8 30.1 1.0 O D:HOH380 4.1 48.3 1.0 O D:HOH325 4.1 30.1 1.0 N1 D:5IC36 4.2 19.5 1.0 N3 D:5IC36 4.2 20.4 1.0 O D:HOH354 4.3 29.3 1.0 OP2 D:G35 4.3 21.6 1.0 C5 D:G35 4.4 18.6 1.0 N9 D:G35 4.5 18.5 1.0 C3' D:G35 4.5 20.3 1.0 O5' D:G35 4.5 22.3 1.0 O5' D:5IC36 4.6 22.7 1.0 C2 D:5IC36 4.7 21.6 1.0 P D:5IC36 4.8 22.5 1.0 C4 D:G35 4.8 20.7 1.0

Y.Xiong, C.Sudarsanakumar, J.Deng, M.Pan, M.Sundaralingam. Crystal Structure of A Bulged Rna From the SL2 Stem-Loop of the Hiv-1 Psi-Rna To Be Published.