Iodine in PDB 1kgi: Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC)
Protein crystallography data
The structure of Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC), PDB code: 1kgi
was solved by
A.Wojtczak,
P.Neumann,
T.Muziol,
V.Cody,
J.R.Luft,
W.Pangborn,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
8.00 /
1.80
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
81.510,
81.510,
160.238,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.7 /
24
|
Iodine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iodine atom in the Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC)
(pdb code 1kgi). This binding sites where shown within
5.0 Angstroms radius around Iodine atom.
In total 16 binding sites of Iodine where determined in the
Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC), PDB code: 1kgi:
Jump to Iodine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iodine binding site 1 out
of 16 in 1kgi
Go back to
Iodine Binding Sites List in 1kgi
Iodine binding site 1 out
of 16 in the Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 1 of Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I128
b:22.7
occ:0.20
|
I3
|
C:T4A128
|
0.0
|
22.7
|
0.2
|
C3
|
C:T4A128
|
2.1
|
26.6
|
0.2
|
I3
|
C:T4A128
|
2.3
|
46.3
|
0.2
|
C2
|
C:T4A128
|
3.0
|
26.1
|
0.2
|
C4
|
C:T4A128
|
3.0
|
29.1
|
0.2
|
O
|
C:ALA509
|
3.1
|
20.5
|
1.0
|
C6'
|
C:T4A128
|
3.2
|
35.0
|
0.2
|
O4
|
C:T4A128
|
3.2
|
30.5
|
0.2
|
C
|
C:ALA509
|
3.4
|
16.4
|
1.0
|
C1'
|
C:T4A128
|
3.5
|
34.9
|
0.2
|
CG
|
C:LEU417
|
3.6
|
22.1
|
1.0
|
C5'
|
C:T4A128
|
3.7
|
33.1
|
0.2
|
C3
|
C:T4A128
|
3.7
|
39.2
|
0.2
|
C1'
|
C:T4A128
|
3.7
|
33.0
|
0.2
|
CB
|
C:LEU417
|
3.8
|
15.1
|
1.0
|
CD1
|
C:LEU417
|
3.8
|
23.5
|
1.0
|
N
|
C:ALA509
|
3.8
|
19.2
|
1.0
|
N
|
C:LEU510
|
3.8
|
14.7
|
1.0
|
O4
|
C:T4A128
|
3.9
|
35.6
|
0.2
|
CA
|
C:LEU510
|
4.1
|
15.1
|
1.0
|
CB
|
C:ALA508
|
4.1
|
16.5
|
1.0
|
N
|
C:LEU417
|
4.1
|
17.1
|
1.0
|
C6'
|
C:T4A128
|
4.1
|
34.1
|
0.2
|
CA
|
C:ALA509
|
4.1
|
17.4
|
1.0
|
CB
|
C:LEU510
|
4.2
|
14.9
|
1.0
|
C4
|
C:T4A128
|
4.2
|
37.9
|
0.2
|
C2'
|
C:T4A128
|
4.3
|
33.8
|
0.2
|
C
|
C:ALA508
|
4.3
|
19.6
|
1.0
|
C1
|
C:T4A128
|
4.3
|
28.9
|
0.2
|
C5
|
C:T4A128
|
4.3
|
29.5
|
0.2
|
C4'
|
C:T4A128
|
4.4
|
32.5
|
0.2
|
I5'
|
C:T4A128
|
4.4
|
36.3
|
0.2
|
C2'
|
C:T4A128
|
4.5
|
34.7
|
0.2
|
O
|
C:LYS415
|
4.6
|
21.5
|
1.0
|
CA
|
C:LEU417
|
4.6
|
16.8
|
1.0
|
CD1
|
C:LEU510
|
4.6
|
10.9
|
1.0
|
C3'
|
C:T4A128
|
4.6
|
32.0
|
0.2
|
CA
|
C:ALA508
|
4.6
|
18.0
|
1.0
|
C2
|
C:T4A128
|
4.7
|
38.8
|
0.2
|
C6
|
C:T4A128
|
4.9
|
29.3
|
0.2
|
C
|
C:VAL416
|
4.9
|
17.1
|
1.0
|
CD2
|
C:LEU417
|
5.0
|
23.4
|
1.0
|
O
|
C:ALA508
|
5.0
|
22.8
|
1.0
|
|
Iodine binding site 2 out
of 16 in 1kgi
Go back to
Iodine Binding Sites List in 1kgi
Iodine binding site 2 out
of 16 in the Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 2 of Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I128
b:46.3
occ:0.18
|
I3
|
C:T4A128
|
0.0
|
46.3
|
0.2
|
C3
|
C:T4A128
|
2.1
|
39.2
|
0.2
|
I3
|
C:T4A128
|
2.3
|
22.7
|
0.2
|
C1'
|
C:T4A128
|
2.7
|
33.0
|
0.2
|
C6'
|
C:T4A128
|
2.7
|
34.1
|
0.2
|
C2
|
C:T4A128
|
3.0
|
38.8
|
0.2
|
C4
|
C:T4A128
|
3.1
|
37.9
|
0.2
|
O4
|
C:T4A128
|
3.1
|
30.5
|
0.2
|
C2'
|
C:T4A128
|
3.2
|
34.7
|
0.2
|
O4
|
C:T4A128
|
3.2
|
35.6
|
0.2
|
C5'
|
C:T4A128
|
3.3
|
35.3
|
0.2
|
C3
|
C:T4A128
|
3.3
|
26.6
|
0.2
|
C4
|
C:T4A128
|
3.6
|
29.1
|
0.2
|
CG
|
C:LYS415
|
3.6
|
36.0
|
1.0
|
CG
|
C:LEU417
|
3.6
|
22.1
|
1.0
|
CB
|
C:ALA508
|
3.7
|
16.5
|
1.0
|
C3'
|
C:T4A128
|
3.7
|
35.3
|
0.2
|
C4'
|
C:T4A128
|
3.8
|
35.7
|
0.2
|
C1'
|
C:T4A128
|
3.8
|
34.9
|
0.2
|
CD1
|
C:LEU417
|
3.9
|
23.5
|
1.0
|
CD
|
C:LYS415
|
3.9
|
43.4
|
1.0
|
C6'
|
C:T4A128
|
3.9
|
35.0
|
0.2
|
CB
|
C:LYS415
|
4.2
|
21.1
|
1.0
|
O
|
C:LYS415
|
4.3
|
21.5
|
1.0
|
CE
|
C:LYS415
|
4.3
|
45.4
|
1.0
|
C5
|
C:T4A128
|
4.3
|
37.2
|
0.2
|
C1
|
C:T4A128
|
4.4
|
37.6
|
0.2
|
C2
|
C:T4A128
|
4.4
|
26.1
|
0.2
|
CA
|
C:ALA508
|
4.5
|
18.0
|
1.0
|
C
|
C:LYS415
|
4.5
|
21.0
|
1.0
|
CD2
|
C:LEU417
|
4.5
|
23.4
|
1.0
|
CB
|
C:LEU417
|
4.6
|
15.1
|
1.0
|
I5'
|
C:T4A128
|
4.6
|
36.6
|
0.2
|
O
|
C:ALA509
|
4.6
|
20.5
|
1.0
|
N
|
C:ALA509
|
4.7
|
19.2
|
1.0
|
C2'
|
C:T4A128
|
4.7
|
33.8
|
0.2
|
O4'
|
C:T4A128
|
4.8
|
34.9
|
0.2
|
C5
|
C:T4A128
|
4.8
|
29.5
|
0.2
|
N
|
C:LEU417
|
4.8
|
17.1
|
1.0
|
C6
|
C:T4A128
|
4.9
|
37.5
|
0.2
|
C
|
C:ALA508
|
4.9
|
19.6
|
1.0
|
N
|
C:VAL416
|
4.9
|
21.4
|
1.0
|
|
Iodine binding site 3 out
of 16 in 1kgi
Go back to
Iodine Binding Sites List in 1kgi
Iodine binding site 3 out
of 16 in the Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 3 of Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I128
b:32.0
occ:0.20
|
I5
|
C:T4A128
|
0.0
|
32.0
|
0.2
|
I5
|
C:T4A128
|
2.0
|
35.9
|
0.2
|
C2'
|
C:T4A128
|
2.0
|
33.8
|
0.2
|
C5
|
C:T4A128
|
2.1
|
29.5
|
0.2
|
C1'
|
C:T4A128
|
2.7
|
34.9
|
0.2
|
C3'
|
C:T4A128
|
2.8
|
32.0
|
0.2
|
O4
|
C:T4A128
|
3.0
|
35.6
|
0.2
|
C4
|
C:T4A128
|
3.1
|
29.1
|
0.2
|
C6
|
C:T4A128
|
3.1
|
29.3
|
0.2
|
C5
|
C:T4A128
|
3.1
|
37.2
|
0.2
|
O4
|
C:T4A128
|
3.2
|
30.5
|
0.2
|
O
|
A:ALA109
|
3.4
|
20.3
|
1.0
|
C4
|
C:T4A128
|
3.5
|
37.9
|
0.2
|
C
|
A:ALA109
|
3.6
|
18.3
|
1.0
|
I3'
|
C:T4A128
|
3.6
|
30.9
|
0.2
|
C1'
|
C:T4A128
|
3.7
|
33.0
|
0.2
|
C6'
|
C:T4A128
|
3.7
|
35.0
|
0.2
|
C4'
|
C:T4A128
|
3.8
|
32.5
|
0.2
|
N
|
A:ALA109
|
3.9
|
16.1
|
1.0
|
N
|
A:LEU110
|
3.9
|
21.0
|
1.0
|
CD1
|
A:LEU17
|
4.0
|
20.3
|
1.0
|
CB
|
A:ALA108
|
4.0
|
17.3
|
1.0
|
C6'
|
C:T4A128
|
4.0
|
34.1
|
0.2
|
CB
|
A:LEU110
|
4.0
|
18.2
|
1.0
|
CG
|
A:LEU17
|
4.1
|
18.4
|
1.0
|
C5'
|
C:T4A128
|
4.2
|
33.1
|
0.2
|
CA
|
A:LEU110
|
4.2
|
17.5
|
1.0
|
CA
|
A:ALA109
|
4.2
|
14.4
|
1.0
|
C
|
A:ALA108
|
4.3
|
16.5
|
1.0
|
C6
|
C:T4A128
|
4.3
|
37.5
|
0.2
|
CB
|
A:LEU17
|
4.3
|
18.0
|
1.0
|
C3
|
C:T4A128
|
4.4
|
26.6
|
0.2
|
C1
|
C:T4A128
|
4.4
|
28.9
|
0.2
|
C2'
|
C:T4A128
|
4.5
|
34.7
|
0.2
|
CA
|
A:ALA108
|
4.6
|
18.7
|
1.0
|
CD1
|
A:LEU110
|
4.7
|
18.6
|
1.0
|
N
|
A:LEU17
|
4.8
|
21.0
|
1.0
|
C3
|
C:T4A128
|
4.8
|
39.2
|
0.2
|
O
|
A:LYS15
|
4.9
|
24.3
|
1.0
|
O4'
|
C:T4A128
|
4.9
|
31.7
|
0.2
|
C2
|
C:T4A128
|
4.9
|
26.1
|
0.2
|
O
|
A:ALA108
|
4.9
|
22.8
|
1.0
|
CG
|
A:LEU110
|
5.0
|
20.8
|
1.0
|
|
Iodine binding site 4 out
of 16 in 1kgi
Go back to
Iodine Binding Sites List in 1kgi
Iodine binding site 4 out
of 16 in the Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 4 of Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I128
b:35.9
occ:0.18
|
I5
|
C:T4A128
|
0.0
|
35.9
|
0.2
|
I5
|
C:T4A128
|
2.0
|
32.0
|
0.2
|
C5
|
C:T4A128
|
2.1
|
37.2
|
0.2
|
C4
|
C:T4A128
|
3.0
|
37.9
|
0.2
|
C6
|
C:T4A128
|
3.1
|
37.5
|
0.2
|
O4
|
C:T4A128
|
3.2
|
35.6
|
0.2
|
C2'
|
C:T4A128
|
3.4
|
33.8
|
0.2
|
CG
|
A:LEU17
|
3.5
|
18.4
|
1.0
|
CG
|
A:LYS15
|
3.5
|
43.0
|
1.0
|
C1'
|
C:T4A128
|
3.5
|
33.0
|
0.2
|
CD1
|
A:LEU17
|
3.6
|
20.3
|
1.0
|
C6'
|
C:T4A128
|
3.6
|
34.1
|
0.2
|
C5
|
C:T4A128
|
3.6
|
29.5
|
0.2
|
C1'
|
C:T4A128
|
3.6
|
34.9
|
0.2
|
O4
|
C:T4A128
|
3.7
|
30.5
|
0.2
|
CB
|
A:ALA108
|
3.7
|
17.3
|
1.0
|
O
|
A:ALA109
|
3.8
|
20.3
|
1.0
|
O
|
A:LYS15
|
3.9
|
24.3
|
1.0
|
C2'
|
C:T4A128
|
3.9
|
34.7
|
0.2
|
N
|
A:ALA109
|
4.1
|
16.1
|
1.0
|
C4
|
C:T4A128
|
4.1
|
29.1
|
0.2
|
C5'
|
C:T4A128
|
4.1
|
35.3
|
0.2
|
CB
|
A:LEU17
|
4.2
|
18.0
|
1.0
|
C
|
A:LYS15
|
4.2
|
25.6
|
1.0
|
CB
|
A:LYS15
|
4.3
|
29.4
|
1.0
|
N
|
A:LEU17
|
4.3
|
21.0
|
1.0
|
CA
|
A:ALA108
|
4.3
|
18.7
|
1.0
|
C3
|
C:T4A128
|
4.3
|
39.2
|
0.2
|
C1
|
C:T4A128
|
4.4
|
37.6
|
0.2
|
C3'
|
C:T4A128
|
4.4
|
35.3
|
0.2
|
C
|
A:ALA109
|
4.5
|
18.3
|
1.0
|
C4'
|
C:T4A128
|
4.5
|
35.7
|
0.2
|
C3'
|
C:T4A128
|
4.5
|
32.0
|
0.2
|
C
|
A:ALA108
|
4.5
|
16.5
|
1.0
|
C
|
A:VAL16
|
4.6
|
21.7
|
1.0
|
CD
|
A:LYS15
|
4.6
|
47.8
|
1.0
|
N
|
A:VAL16
|
4.6
|
25.2
|
1.0
|
CD2
|
A:LEU17
|
4.6
|
17.1
|
1.0
|
CE
|
A:LYS15
|
4.6
|
52.3
|
1.0
|
CA
|
A:VAL16
|
4.7
|
20.9
|
1.0
|
NZ
|
A:LYS15
|
4.7
|
50.6
|
1.0
|
C6
|
C:T4A128
|
4.7
|
29.3
|
0.2
|
C6'
|
C:T4A128
|
4.9
|
35.0
|
0.2
|
CA
|
A:LEU17
|
4.9
|
19.3
|
1.0
|
CA
|
A:ALA109
|
4.9
|
14.4
|
1.0
|
C2
|
C:T4A128
|
4.9
|
38.8
|
0.2
|
CA
|
A:LYS15
|
4.9
|
24.8
|
1.0
|
|
Iodine binding site 5 out
of 16 in 1kgi
Go back to
Iodine Binding Sites List in 1kgi
Iodine binding site 5 out
of 16 in the Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 5 of Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I128
b:36.6
occ:0.20
|
I5'
|
C:T4A128
|
0.0
|
36.6
|
0.2
|
C5'
|
C:T4A128
|
2.1
|
35.3
|
0.2
|
C6'
|
C:T4A128
|
3.0
|
34.1
|
0.2
|
C4'
|
C:T4A128
|
3.1
|
35.7
|
0.2
|
O4'
|
C:T4A128
|
3.3
|
34.9
|
0.2
|
O
|
A:HOH855
|
3.3
|
47.5
|
1.0
|
NZ
|
A:LYS15
|
3.7
|
50.6
|
1.0
|
CG2
|
C:THR506
|
3.9
|
13.7
|
1.0
|
O4
|
C:T4A128
|
4.0
|
35.6
|
0.2
|
C4
|
C:T4A128
|
4.0
|
37.9
|
0.2
|
CD1
|
A:LEU17
|
4.1
|
20.3
|
1.0
|
C3
|
C:T4A128
|
4.2
|
39.2
|
0.2
|
CB
|
C:ALA508
|
4.3
|
16.5
|
1.0
|
C1'
|
C:T4A128
|
4.4
|
33.0
|
0.2
|
C3'
|
C:T4A128
|
4.4
|
35.3
|
0.2
|
C5
|
C:T4A128
|
4.6
|
37.2
|
0.2
|
I3
|
C:T4A128
|
4.6
|
46.3
|
0.2
|
O
|
C:HOH926
|
4.6
|
53.5
|
1.0
|
CG2
|
C:VAL521
|
4.7
|
22.9
|
1.0
|
CD
|
C:LYS415
|
4.7
|
43.4
|
1.0
|
CE
|
A:LYS15
|
4.9
|
52.3
|
1.0
|
C2'
|
C:T4A128
|
4.9
|
34.7
|
0.2
|
C2
|
C:T4A128
|
4.9
|
38.8
|
0.2
|
|
Iodine binding site 6 out
of 16 in 1kgi
Go back to
Iodine Binding Sites List in 1kgi
Iodine binding site 6 out
of 16 in the Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 6 of Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I128
b:36.3
occ:0.18
|
I5'
|
C:T4A128
|
0.0
|
36.3
|
0.2
|
C7
|
C:T4A128
|
1.5
|
31.6
|
0.2
|
C2
|
C:T4A128
|
1.8
|
26.1
|
0.2
|
C1
|
C:T4A128
|
1.8
|
28.9
|
0.2
|
C5'
|
C:T4A128
|
2.1
|
33.1
|
0.2
|
C8
|
C:T4A128
|
2.1
|
33.4
|
0.2
|
O8
|
C:T4A128
|
2.7
|
33.9
|
0.2
|
C6'
|
C:T4A128
|
3.0
|
35.0
|
0.2
|
O9
|
C:T4A128
|
3.0
|
34.7
|
0.2
|
C4'
|
C:T4A128
|
3.0
|
32.5
|
0.2
|
C6
|
C:T4A128
|
3.2
|
29.3
|
0.2
|
C3
|
C:T4A128
|
3.2
|
26.6
|
0.2
|
O4'
|
C:T4A128
|
3.2
|
31.7
|
0.2
|
O
|
C:SER517
|
3.3
|
26.9
|
1.0
|
OG
|
C:SER517
|
3.4
|
41.1
|
1.0
|
C
|
C:SER517
|
3.4
|
26.4
|
1.0
|
CA
|
C:THR518
|
3.5
|
23.8
|
1.0
|
N
|
C:THR518
|
3.5
|
27.3
|
1.0
|
N
|
C:THR519
|
3.6
|
21.4
|
1.0
|
C
|
C:THR518
|
3.6
|
23.5
|
1.0
|
O
|
C:ALA508
|
3.7
|
22.8
|
1.0
|
CB
|
C:SER517
|
4.0
|
27.5
|
1.0
|
N
|
C:LEU510
|
4.1
|
14.7
|
1.0
|
C4
|
C:T4A128
|
4.1
|
29.1
|
0.2
|
C5
|
C:T4A128
|
4.1
|
29.5
|
0.2
|
CB
|
C:THR519
|
4.2
|
21.0
|
1.0
|
C
|
C:ALA508
|
4.3
|
19.6
|
1.0
|
CG2
|
C:THR519
|
4.3
|
24.5
|
1.0
|
CB
|
C:LEU510
|
4.3
|
14.9
|
1.0
|
C1'
|
C:T4A128
|
4.3
|
34.9
|
0.2
|
C3'
|
C:T4A128
|
4.3
|
32.0
|
0.2
|
CA
|
C:SER517
|
4.4
|
29.8
|
1.0
|
O
|
C:THR518
|
4.4
|
20.5
|
1.0
|
CA
|
C:ALA509
|
4.4
|
17.4
|
1.0
|
I3
|
C:T4A128
|
4.4
|
22.7
|
0.2
|
CA
|
C:THR519
|
4.5
|
22.4
|
1.0
|
C
|
C:ALA509
|
4.5
|
16.4
|
1.0
|
N
|
C:ALA509
|
4.6
|
19.2
|
1.0
|
CD2
|
A:LEU110
|
4.8
|
14.7
|
1.0
|
CB
|
C:ALA508
|
4.8
|
16.5
|
1.0
|
CA
|
C:LEU510
|
4.8
|
15.1
|
1.0
|
C2'
|
C:T4A128
|
4.9
|
33.8
|
0.2
|
CB
|
C:THR518
|
4.9
|
20.0
|
1.0
|
|
Iodine binding site 7 out
of 16 in 1kgi
Go back to
Iodine Binding Sites List in 1kgi
Iodine binding site 7 out
of 16 in the Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 7 of Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I128
b:40.0
occ:0.20
|
I3'
|
C:T4A128
|
0.0
|
40.0
|
0.2
|
C7
|
C:T4A128
|
0.8
|
37.4
|
0.2
|
C8
|
C:T4A128
|
1.1
|
37.2
|
0.2
|
C1
|
C:T4A128
|
1.6
|
37.6
|
0.2
|
O8
|
C:T4A128
|
1.8
|
37.1
|
0.2
|
C3'
|
C:T4A128
|
2.1
|
35.3
|
0.2
|
O9
|
C:T4A128
|
2.1
|
35.8
|
0.2
|
C2
|
C:T4A128
|
2.4
|
38.8
|
0.2
|
C6
|
C:T4A128
|
2.8
|
37.5
|
0.2
|
C2'
|
C:T4A128
|
3.0
|
34.7
|
0.2
|
C4'
|
C:T4A128
|
3.1
|
35.7
|
0.2
|
O4'
|
C:T4A128
|
3.3
|
34.9
|
0.2
|
NZ
|
C:LYS415
|
3.6
|
48.1
|
1.0
|
C3
|
C:T4A128
|
3.7
|
39.2
|
0.2
|
CG2
|
A:THR106
|
3.9
|
27.7
|
1.0
|
C5
|
C:T4A128
|
4.0
|
37.2
|
0.2
|
CE
|
C:LYS415
|
4.2
|
45.4
|
1.0
|
C1'
|
C:T4A128
|
4.3
|
33.0
|
0.2
|
C4
|
C:T4A128
|
4.3
|
37.9
|
0.2
|
C5'
|
C:T4A128
|
4.4
|
35.3
|
0.2
|
CE
|
A:MET13
|
4.8
|
39.6
|
0.7
|
CG2
|
A:VAL121
|
4.8
|
28.8
|
1.0
|
C6'
|
C:T4A128
|
4.9
|
34.1
|
0.2
|
CE
|
A:MET13
|
5.0
|
32.3
|
0.3
|
CB
|
A:THR106
|
5.0
|
23.8
|
1.0
|
|
Iodine binding site 8 out
of 16 in 1kgi
Go back to
Iodine Binding Sites List in 1kgi
Iodine binding site 8 out
of 16 in the Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 8 of Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I128
b:30.9
occ:0.18
|
I3'
|
C:T4A128
|
0.0
|
30.9
|
0.2
|
C3'
|
C:T4A128
|
2.1
|
32.0
|
0.2
|
C4'
|
C:T4A128
|
3.0
|
32.5
|
0.2
|
C2'
|
C:T4A128
|
3.0
|
33.8
|
0.2
|
O4'
|
C:T4A128
|
3.2
|
31.7
|
0.2
|
OG1
|
A:THR119
|
3.3
|
34.8
|
1.0
|
OG
|
A:SER117
|
3.4
|
30.9
|
1.0
|
O
|
A:SER117
|
3.4
|
24.5
|
1.0
|
N
|
A:THR119
|
3.6
|
23.8
|
1.0
|
O
|
A:ALA108
|
3.6
|
22.8
|
1.0
|
I5
|
C:T4A128
|
3.6
|
32.0
|
0.2
|
C5
|
C:T4A128
|
3.7
|
29.5
|
0.2
|
C
|
A:SER117
|
3.7
|
24.5
|
1.0
|
CB
|
A:THR119
|
3.8
|
28.9
|
1.0
|
CA
|
A:THR118
|
3.8
|
25.5
|
1.0
|
C
|
A:THR118
|
3.9
|
25.6
|
1.0
|
N
|
A:THR118
|
4.0
|
23.7
|
1.0
|
C
|
A:ALA108
|
4.0
|
16.5
|
1.0
|
N
|
A:LEU110
|
4.1
|
21.0
|
1.0
|
C6
|
C:T4A128
|
4.1
|
29.3
|
0.2
|
C4
|
C:T4A128
|
4.1
|
29.1
|
0.2
|
CA
|
A:ALA109
|
4.2
|
14.4
|
1.0
|
CB
|
A:SER117
|
4.3
|
26.7
|
1.0
|
N
|
A:ALA109
|
4.3
|
16.1
|
1.0
|
C5'
|
C:T4A128
|
4.3
|
33.1
|
0.2
|
CA
|
A:THR119
|
4.3
|
27.6
|
1.0
|
C1'
|
C:T4A128
|
4.4
|
34.9
|
0.2
|
C
|
A:ALA109
|
4.4
|
18.3
|
1.0
|
CB
|
A:LEU110
|
4.4
|
18.2
|
1.0
|
O4
|
C:T4A128
|
4.4
|
30.5
|
0.2
|
CB
|
A:ALA108
|
4.4
|
17.3
|
1.0
|
O
|
C:HOH972
|
4.5
|
60.8
|
1.0
|
CA
|
A:SER117
|
4.6
|
25.5
|
1.0
|
O
|
A:THR118
|
4.6
|
25.4
|
1.0
|
O8
|
C:T4A128
|
4.7
|
33.9
|
0.2
|
CD2
|
C:LEU510
|
4.8
|
17.2
|
1.0
|
C6'
|
C:T4A128
|
4.9
|
35.0
|
0.2
|
C3
|
C:T4A128
|
4.9
|
26.6
|
0.2
|
C1
|
C:T4A128
|
4.9
|
28.9
|
0.2
|
CA
|
A:LEU110
|
4.9
|
17.5
|
1.0
|
CA
|
A:ALA108
|
4.9
|
18.7
|
1.0
|
|
Iodine binding site 9 out
of 16 in 1kgi
Go back to
Iodine Binding Sites List in 1kgi
Iodine binding site 9 out
of 16 in the Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 9 of Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:I328
b:43.7
occ:0.14
|
I3
|
D:T4A328
|
0.0
|
43.7
|
0.1
|
I3
|
D:T4A328
|
1.6
|
38.3
|
0.1
|
C3
|
D:T4A328
|
2.1
|
40.3
|
0.1
|
C3
|
D:T4A328
|
2.3
|
37.0
|
0.1
|
C2
|
D:T4A328
|
2.7
|
36.9
|
0.1
|
C2
|
D:T4A328
|
3.0
|
40.8
|
0.1
|
C4
|
D:T4A328
|
3.1
|
39.8
|
0.1
|
O4
|
D:T4A328
|
3.3
|
35.2
|
0.1
|
C4
|
D:T4A328
|
3.4
|
36.8
|
0.1
|
CD1
|
B:LEU217
|
3.7
|
17.7
|
1.0
|
CE
|
B:LYS215
|
3.9
|
51.1
|
1.0
|
C1
|
D:T4A328
|
3.9
|
36.3
|
0.1
|
C6'
|
D:T4A328
|
4.0
|
30.0
|
0.1
|
O4
|
D:T4A328
|
4.0
|
34.0
|
0.1
|
C1'
|
D:T4A328
|
4.0
|
31.4
|
0.1
|
C1'
|
D:T4A328
|
4.1
|
31.5
|
0.1
|
CG2
|
D:VAL721
|
4.2
|
26.4
|
1.0
|
C6'
|
D:T4A328
|
4.2
|
30.1
|
0.1
|
CD2
|
B:LEU217
|
4.3
|
16.4
|
1.0
|
C1
|
D:T4A328
|
4.3
|
39.6
|
0.1
|
C5
|
D:T4A328
|
4.4
|
41.0
|
0.1
|
CG2
|
D:THR706
|
4.4
|
26.6
|
1.0
|
CG
|
B:LEU217
|
4.4
|
18.1
|
1.0
|
C5
|
D:T4A328
|
4.4
|
37.5
|
0.1
|
NZ
|
B:LYS215
|
4.6
|
51.8
|
1.0
|
C6
|
D:T4A328
|
4.7
|
37.2
|
0.1
|
C5'
|
D:T4A328
|
4.7
|
28.8
|
0.1
|
C2'
|
D:T4A328
|
4.8
|
31.3
|
0.1
|
CB
|
D:ALA708
|
4.8
|
22.1
|
1.0
|
C6
|
D:T4A328
|
4.9
|
41.0
|
0.1
|
C7
|
D:T4A328
|
4.9
|
34.6
|
0.1
|
CD
|
B:LYS215
|
5.0
|
45.4
|
1.0
|
|
Iodine binding site 10 out
of 16 in 1kgi
Go back to
Iodine Binding Sites List in 1kgi
Iodine binding site 10 out
of 16 in the Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 10 of Rat Transthyretin (Also Called Prealbumin) Complex with 3,3',5,5'- Tetraiodothyroacetic Acid (T4AC) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:I328
b:38.3
occ:0.14
|
I3
|
D:T4A328
|
0.0
|
38.3
|
0.1
|
I3
|
D:T4A328
|
1.6
|
43.7
|
0.1
|
C3
|
D:T4A328
|
2.1
|
37.0
|
0.1
|
C3
|
D:T4A328
|
2.2
|
40.3
|
0.1
|
C2
|
D:T4A328
|
2.8
|
40.8
|
0.1
|
C2
|
D:T4A328
|
3.0
|
36.9
|
0.1
|
C4
|
D:T4A328
|
3.1
|
36.8
|
0.1
|
C4
|
D:T4A328
|
3.2
|
39.8
|
0.1
|
O4
|
D:T4A328
|
3.3
|
34.0
|
0.1
|
C1'
|
D:T4A328
|
3.5
|
31.4
|
0.1
|
C6'
|
D:T4A328
|
3.6
|
30.1
|
0.1
|
O4
|
D:T4A328
|
3.7
|
35.2
|
0.1
|
CB
|
D:ALA708
|
3.8
|
22.1
|
1.0
|
CG2
|
D:THR706
|
3.8
|
26.6
|
1.0
|
CG
|
D:LYS615
|
3.9
|
44.0
|
1.0
|
C2'
|
D:T4A328
|
3.9
|
31.3
|
0.1
|
CB
|
D:LYS615
|
4.0
|
34.7
|
1.0
|
C6'
|
D:T4A328
|
4.0
|
30.0
|
0.1
|
C1
|
D:T4A328
|
4.0
|
39.6
|
0.1
|
C1'
|
D:T4A328
|
4.1
|
31.5
|
0.1
|
C5
|
D:T4A328
|
4.3
|
41.0
|
0.1
|
C1
|
D:T4A328
|
4.3
|
36.3
|
0.1
|
C5
|
D:T4A328
|
4.3
|
37.5
|
0.1
|
CD1
|
B:LEU217
|
4.6
|
17.7
|
1.0
|
C6
|
D:T4A328
|
4.6
|
41.0
|
0.1
|
C5'
|
D:T4A328
|
4.7
|
28.5
|
0.1
|
C3'
|
D:T4A328
|
4.8
|
30.5
|
0.1
|
CA
|
D:ALA708
|
4.8
|
25.1
|
1.0
|
C5'
|
D:T4A328
|
4.9
|
28.8
|
0.1
|
C6
|
D:T4A328
|
4.9
|
37.2
|
0.1
|
CG2
|
D:VAL721
|
4.9
|
26.4
|
1.0
|
CD
|
D:LYS615
|
5.0
|
52.9
|
1.0
|
|
Reference:
T.Muziol,
V.Cody,
J.R.Luft,
W.Pangborn,
A.Wojtczak.
Complex of Rat Transthyretin with Tetraiodothyroacetic Acid Refined at 2.1 and 1.8 A Resolution. Acta Biochim.Pol. V. 48 877 2001.
ISSN: ISSN 0001-527X
PubMed: 11995998
Page generated: Sun Aug 11 12:23:43 2024
|