Iodine in PDB 1lkr: Monoclinic Hen Egg White Lysozyme Iodide

All present enzymatic activity of Monoclinic Hen Egg White Lysozyme Iodide:
3.2.1.17;

The structure of Monoclinic Hen Egg White Lysozyme Iodide, PDB code: 1lkr was solved by L.K.Steinrauf, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	27.894, 63.153, 60.227, 90.00, 90.12, 90.00
R / Rfree (%)	14 / 14

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Iodine atom in the Monoclinic Hen Egg White Lysozyme Iodide (pdb code 1lkr). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 17 binding sites of Iodine where determined in the Monoclinic Hen Egg White Lysozyme Iodide, PDB code: 1lkr:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 17 in the Monoclinic Hen Egg White Lysozyme Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Monoclinic Hen Egg White Lysozyme Iodide within 5.0Å range: probe atom residue distance (Å) B Occ A:I130 b:3.4 occ:0.63 CA A:ARG21 3.9 3.0 1.0 C A:ARG21 3.9 2.8 1.0 N A:GLY22 4.1 2.5 1.0 O A:HOH152 4.1 0.9 1.0 N A:ARG21 4.5 1.8 1.0 O A:ARG21 4.5 3.0 1.0 CD A:ARG21 4.8 8.5 0.6 CA A:GLY22 4.9 2.2 1.0

Iodine binding site 2 out of 17 in the Monoclinic Hen Egg White Lysozyme Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Monoclinic Hen Egg White Lysozyme Iodide within 5.0Å range: probe atom residue distance (Å) B Occ A:I132 b:6.2 occ:0.52 CD A:ARG5 3.9 2.4 1.0 NZ A:LYS33 3.9 7.5 1.0 NE A:ARG5 4.0 2.1 1.0 O A:HOH309 4.2 8.1 0.5 CE2 A:PHE38 4.2 3.7 1.0 CZ3 A:TRP123 4.4 9.9 1.0 CB A:ARG5 4.4 2.2 1.0 O A:HOH415 4.5 5.5 0.5 CE A:LYS33 4.6 0.1 1.0 CD A:LYS33 4.6 7.0 1.0 CG A:ARG5 4.7 2.6 1.0 CZ A:PHE38 4.8 2.6 1.0 O A:HOH326 5.0 4.5 0.5

Iodine binding site 3 out of 17 in the Monoclinic Hen Egg White Lysozyme Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Monoclinic Hen Egg White Lysozyme Iodide within 5.0Å range: probe atom residue distance (Å) B Occ A:I133 b:1.9 occ:0.34 OD1 A:ASP87 3.2 3.8 0.5 N A:ILE88 3.5 4.7 1.0 CG1 A:ILE88 3.7 4.8 1.0 CA A:ASP87 3.8 7.8 1.0 O A:HOH165 3.9 3.8 0.5 O A:HOH232 4.0 1.1 0.5 CG A:ASP87 4.1 2.1 0.7 NH2 A:ARG14 4.1 3.6 1.0 C A:ASP87 4.2 6.7 1.0 CB A:ALA11 4.2 1.9 1.0 CE1 A:HIS15 4.2 0.5 1.0 CB A:ILE88 4.5 5.3 1.0 CA A:ILE88 4.6 4.3 1.0 CZ A:PHE3 4.6 4.2 1.0 CG2 A:ILE88 4.7 6.9 1.0 CD1 A:ILE88 4.8 7.2 1.0 O A:SER86 4.8 9.7 1.0 OD2 A:ASP87 4.9 6.0 0.5 CB A:ASP87 5.0 9.5 1.0

Iodine binding site 4 out of 17 in the Monoclinic Hen Egg White Lysozyme Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Monoclinic Hen Egg White Lysozyme Iodide within 5.0Å range: probe atom residue distance (Å) B Occ A:I134 b:6.1 occ:0.27 O B:HOH198 2.8 5.1 1.0 O A:ASN106 3.6 7.1 1.0 O A:HOH457 3.8 3.2 0.5 O A:HOH430 3.9 3.6 0.5 C A:ASN106 3.9 2.5 1.0 CB A:ASN103 4.1 2.6 1.0 CG A:ASN103 4.1 5.4 1.0 N A:ALA107 4.1 3.0 1.0 CA A:ALA107 4.2 3.1 1.0 CB A:ASN106 4.3 3.3 1.0 ND2 A:ASN103 4.4 2.0 1.0 OD1 A:ASN103 4.4 9.8 1.0 O A:HOH350 4.4 3.6 0.5 O A:HOH180 4.7 3.1 1.0 CA A:ASN106 4.7 1.1 1.0 O B:HOH330 4.9 4.9 0.5

Iodine binding site 5 out of 17 in the Monoclinic Hen Egg White Lysozyme Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Monoclinic Hen Egg White Lysozyme Iodide within 5.0Å range: probe atom residue distance (Å) B Occ A:I135 b:1.0 occ:0.58 O A:HOH199 3.5 2.6 1.0 O A:HOH189 3.6 6.3 1.0 ND2 A:ASN113 3.8 2.1 0.8 CB A:ASN113 4.1 5.7 1.0 CA A:ALA110 4.2 1.7 1.0 CG A:ASN113 4.4 8.2 0.9 O A:HOH276 4.4 6.1 0.5 CB A:ALA110 4.4 4.0 1.0 CD A:ARG114 4.5 9.0 1.0 CG A:ARG114 4.6 7.4 1.0 O A:VAL109 4.8 0.7 1.0 N A:ALA110 4.8 1.6 1.0

Iodine binding site 6 out of 17 in the Monoclinic Hen Egg White Lysozyme Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Monoclinic Hen Egg White Lysozyme Iodide within 5.0Å range: probe atom residue distance (Å) B Occ A:I140 b:9.2 occ:0.25 OH A:TYR23 3.4 5.9 1.0 O A:HOH175 3.5 5.7 1.0 CE A:LYS116 3.9 4.3 1.0 OD1 B:ASN77 3.9 9.9 0.7 ND2 A:ASN106 4.0 8.2 1.0 CH2 A:TRP111 4.2 0.5 1.0 CZ A:TYR23 4.3 3.1 1.0 O A:HOH304 4.3 2.8 0.5 CE1 A:TYR23 4.3 2.1 1.0 NZ A:LYS116 4.4 6.9 1.0 CZ3 A:TRP111 4.8 0.4 1.0 CG A:ASN106 4.8 3.7 1.0 OD1 A:ASN106 4.8 5.7 1.0 CG B:ASN77 4.9 5.7 0.7

Iodine binding site 7 out of 17 in the Monoclinic Hen Egg White Lysozyme Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Monoclinic Hen Egg White Lysozyme Iodide within 5.0Å range: probe atom residue distance (Å) B Occ A:I141 b:9.5 occ:0.23 O A:HOH155 3.8 6.8 0.5 CA A:ARG14 4.0 4.9 1.0 CG A:LYS13 4.1 5.0 0.8 O A:LYS13 4.1 2.3 1.0 N A:ARG14 4.3 2.8 1.0 CE A:LYS13 4.4 4.8 0.6 NZ A:LYS13 4.4 4.6 0.3 C A:LYS13 4.4 2.4 1.0 O A:HOH301 4.4 1.6 0.5 CD A:LYS13 4.7 4.6 0.8 CB A:LYS13 4.7 3.6 1.0 CB A:ARG14 4.8 7.1 0.8

Iodine binding site 8 out of 17 in the Monoclinic Hen Egg White Lysozyme Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Monoclinic Hen Egg White Lysozyme Iodide within 5.0Å range: probe atom residue distance (Å) B Occ A:I142 b:4.0 occ:0.23 CG A:GLN121 2.7 0.3 0.6 NE2 A:GLN121 2.8 1.2 0.3 O A:HOH392 3.3 7.6 0.5 OG A:SER24 3.3 5.7 1.0 CD A:GLN121 3.4 0.5 0.5 N A:GLY26 3.4 8.4 1.0 CB A:SER24 3.7 3.0 1.0 CA A:GLN121 3.8 8.5 1.0 CB A:GLN121 3.9 9.4 1.0 CD1 A:ILE124 3.9 6.9 1.0 CA A:GLY26 3.9 9.1 1.0 N A:LEU25 4.2 0.1 1.0 N A:GLN121 4.3 6.8 1.0 C A:SER24 4.4 0.8 1.0 CG1 A:ILE124 4.5 1.8 1.0 C A:LEU25 4.6 9.5 1.0 CA A:LEU25 4.6 9.1 1.0 O A:VAL120 4.7 8.8 1.0 CA A:SER24 4.7 1.6 1.0 C A:VAL120 4.7 5.5 1.0 C A:GLN121 4.7 7.5 1.0 CB A:LEU25 4.8 9.6 1.0 OE1 A:GLN121 4.9 0.8 0.2 C A:GLY26 5.0 8.3 1.0

Iodine binding site 9 out of 17 in the Monoclinic Hen Egg White Lysozyme Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Monoclinic Hen Egg White Lysozyme Iodide within 5.0Å range: probe atom residue distance (Å) B Occ A:I143 b:6.3 occ:0.24 CD A:ARG45 3.7 2.0 0.2 O A:HOH431 4.0 3.4 0.5 NE A:ARG45 4.1 2.5 0.5 O A:HOH328 4.9 1.0 0.5 O A:HOH418 5.0 1.9 0.5

Iodine binding site 10 out of 17 in the Monoclinic Hen Egg White Lysozyme Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Monoclinic Hen Egg White Lysozyme Iodide within 5.0Å range: probe atom residue distance (Å) B Occ A:I144 b:5.5 occ:0.68 ND2 A:ASN74 3.8 2.9 1.0 N A:PRO79 4.0 2.8 1.0 CD A:PRO79 4.1 3.6 1.0 C A:ILE78 4.1 4.5 1.0 ND2 A:ASN65 4.3 9.6 1.0 CA A:ILE78 4.3 7.1 1.0 O A:ILE78 4.4 3.6 1.0 CB A:ASN65 4.5 8.6 1.0 N A:ILE78 4.5 6.4 1.0 CA A:PRO79 4.5 1.9 1.0 C A:ASN77 4.6 8.3 1.0 CB A:PRO79 4.7 2.7 1.0 O A:ASN77 4.8 9.2 1.0 CG A:ASN74 4.8 9.6 1.0 CG A:PRO79 4.9 3.6 1.0 ND2 A:ASN77 4.9 2.4 0.7

L.K.Steinrauf, L.K.Steinrauf. N/A N/A.
ISSN: ISSN 0907-4449
PubMed: 9757091
DOI: 10.1107/S0907444997016922