Iodine in PDB 1m9b: Crystal Structure of the 26 kDa Glutathione S-Transferase From Schistosoma Japonicum Complexed with Gamma-Glutamyl[S-(2-Iodobenzyl) Cysteinyl]Glycine

Enzymatic activity of Crystal Structure of the 26 kDa Glutathione S-Transferase From Schistosoma Japonicum Complexed with Gamma-Glutamyl[S-(2-Iodobenzyl) Cysteinyl]Glycine

All present enzymatic activity of Crystal Structure of the 26 kDa Glutathione S-Transferase From Schistosoma Japonicum Complexed with Gamma-Glutamyl[S-(2-Iodobenzyl) Cysteinyl]Glycine:
2.5.1.18;

Protein crystallography data

The structure of Crystal Structure of the 26 kDa Glutathione S-Transferase From Schistosoma Japonicum Complexed with Gamma-Glutamyl[S-(2-Iodobenzyl) Cysteinyl]Glycine, PDB code: 1m9b was solved by R.M.F.Cardoso, D.S.Daniels, C.M.Bruns, J.A.Tainer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	26.00 / 2.60
*Space group*	P 6₃ 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	116.567, 116.567, 78.748, 90.00, 90.00, 120.00
*R / R_free (%)*	23.1 / 27.5

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of the 26 kDa Glutathione S-Transferase From Schistosoma Japonicum Complexed with Gamma-Glutamyl[S-(2-Iodobenzyl) Cysteinyl]Glycine (pdb code 1m9b). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Crystal Structure of the 26 kDa Glutathione S-Transferase From Schistosoma Japonicum Complexed with Gamma-Glutamyl[S-(2-Iodobenzyl) Cysteinyl]Glycine, PDB code: 1m9b:

Iodine binding site 1 out of 1 in 1m9b

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Iodine Binding Sites List in 1m9b

Iodine binding site 1 out of 1 in the Crystal Structure of the 26 kDa Glutathione S-Transferase From Schistosoma Japonicum Complexed with Gamma-Glutamyl[S-(2-Iodobenzyl) Cysteinyl]Glycine

Mono view

Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of the 26 kDa Glutathione S-Transferase From Schistosoma Japonicum Complexed with Gamma-Glutamyl[S-(2-Iodobenzyl) Cysteinyl]Glycine within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:I220 b:91.0 occ:1.00	I2S	A:IBG220	0.0	91.0	1.0
	C2S	A:IBG220	2.2	79.1	1.0
	C3S	A:IBG220	3.1	79.7	1.0
	C1S	A:IBG220	3.2	74.8	1.0
	CS	A:IBG220	3.5	67.8	1.0
	SG2	A:IBG220	3.7	58.0	1.0
	OH	A:TYR111	3.7	48.8	1.0
	OH	A:TYR7	3.9	31.2	1.0
	CA	A:GLY12	4.0	40.3	1.0
	CD1	A:ILE10	4.2	40.3	1.0
	N	A:GLY205	4.3	45.9	1.0
	CA	A:GLN204	4.3	46.1	1.0
	CG	A:GLN204	4.4	48.8	1.0
	C4S	A:IBG220	4.4	78.1	1.0
	C6S	A:IBG220	4.5	75.0	1.0
	C	A:GLN204	4.6	46.9	1.0
	CB	A:GLN204	4.6	45.8	1.0
	CG	A:LEU13	4.7	40.0	1.0
	C	A:GLY12	4.7	41.1	1.0
	N	A:LEU13	4.7	40.5	1.0
	CD2	A:LEU13	4.9	37.7	1.0
	C5S	A:IBG220	5.0	76.6	1.0
	CZ	A:TYR111	5.0	50.1	1.0

Reference:

R.M.F.Cardoso, D.S.Daniels, C.M.Bruns, J.A.Tainer. Characterization of the Electrophile Binding Site and Substrate Binding Mode of the 26-kDa Glutathione S-Transferase From Schistosoma Japonicum Proteins: V. 51 137 2003STRUCT.,Funct.,Genet..
ISSN: ISSN 0887-3585
PubMed: 12596270
DOI: 10.1002/PROT.10345

Page generated: Sun Aug 11 12:28:05 2024

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