Atomistry » Iodine » PDB 1lkr-1pvh » 1ouq
Atomistry »
  Iodine »
    PDB 1lkr-1pvh »
      1ouq »

Iodine in PDB 1ouq: Crystal Structure of Wild-Type Cre Recombinase-Loxp Synapse

Protein crystallography data

The structure of Crystal Structure of Wild-Type Cre Recombinase-Loxp Synapse, PDB code: 1ouq was solved by E.Ennifar, J.E.W.Meyer, F.Buchholz, A.F.Stewart, D.Suck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 3.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 109.500, 165.600, 193.700, 90.00, 90.00, 90.00
R / Rfree (%) 21 / 26.4

Other elements in 1ouq:

The structure of Crystal Structure of Wild-Type Cre Recombinase-Loxp Synapse also contains other interesting chemical elements:

Magnesium (Mg) 7 atoms

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Wild-Type Cre Recombinase-Loxp Synapse (pdb code 1ouq). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Crystal Structure of Wild-Type Cre Recombinase-Loxp Synapse, PDB code: 1ouq:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 1ouq

Go back to Iodine Binding Sites List in 1ouq
Iodine binding site 1 out of 2 in the Crystal Structure of Wild-Type Cre Recombinase-Loxp Synapse


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Wild-Type Cre Recombinase-Loxp Synapse within 5.0Å range:
probe atom residue distance (Å) B Occ
C:I1107

b:53.5
occ:0.50
C6 C:DC106 4.0 49.2 1.0
CA B:ALA260 4.0 47.7 1.0
O B:ARG259 4.2 44.9 1.0
C5 C:DC106 4.3 48.6 1.0
C5' C:DC106 4.4 52.7 1.0
CB B:ALA260 4.6 47.9 1.0
O B:ALA260 4.6 47.2 1.0
C2' C:DC106 4.6 54.8 1.0
C5 C:UMP107 4.7 49.1 1.0
O4 C:UMP107 4.7 51.0 1.0
N B:ALA260 4.7 46.7 1.0
C B:ARG259 4.8 46.3 1.0
N1 C:DC106 4.8 51.5 1.0
C B:ALA260 4.8 47.8 1.0
C3' C:DC106 4.9 56.1 1.0
CA B:GLY263 5.0 49.5 1.0

Iodine binding site 2 out of 2 in 1ouq

Go back to Iodine Binding Sites List in 1ouq
Iodine binding site 2 out of 2 in the Crystal Structure of Wild-Type Cre Recombinase-Loxp Synapse


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Wild-Type Cre Recombinase-Loxp Synapse within 5.0Å range:
probe atom residue distance (Å) B Occ
F:I2107

b:54.4
occ:0.50
C5 G:DC106 4.2 44.3 1.0
C6 G:DC106 4.3 43.5 1.0
CA F:ALA260 4.3 37.1 1.0
O F:ARG259 4.3 38.7 1.0
C5' G:DC106 4.7 46.8 1.0
CA F:GLY263 4.7 37.9 1.0
O4 G:UMP107 4.7 57.1 1.0
CB F:ALA260 4.8 38.3 1.0
C5 G:UMP107 4.8 55.5 1.0
C F:ARG259 4.8 39.4 1.0
N F:ALA260 4.9 38.2 1.0
NH1 F:ARG259 4.9 45.9 1.0
O F:ALA260 5.0 38.0 1.0

Reference:

E.Ennifar, J.E.W.Meyer, F.Buchholz, A.F.Stewart, D.Suck. Crystal Structure of A Wild-Type Cre Recombinase-Loxp Synapse Reveals A Novel Spacer Conformation Suggesting An Alternative Mechanism For Dna Cleavage Activation Nucleic Acids Res. V. 31 5449 2003.
ISSN: ISSN 0305-1048
PubMed: 12954782
DOI: 10.1093/NAR/GKG732
Page generated: Sun Dec 13 19:20:40 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy