Iodine in PDB 1oxv: Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus

The structure of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus, PDB code: 1oxv was solved by G.Verdon, S.V.Albers, B.W.Dijkstra, A.J.Driessen, A.M.Thunnissen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.95
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.094, 148.776, 176.710, 90.00, 90.00, 90.00
R / Rfree (%)	18.8 / 24

The structure of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus also contains other interesting chemical elements:

Magnesium

(Mg)

3 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 38;

Binding sites:

The binding sites of Iodine atom in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus (pdb code 1oxv). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 38 binding sites of Iodine where determined in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus, PDB code: 1oxv:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 38 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:I1201 b:31.7 occ:0.80 O A:HOH1492 3.2 55.5 1.0 NZ A:LYS17 3.3 8.2 1.0 CE A:LYS17 3.9 8.6 1.0

Iodine binding site 2 out of 38 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:I1202 b:40.7 occ:0.60 O B:HOH1368 3.2 43.3 1.0 CD1 A:ILE26 3.3 40.7 1.0 O A:HOH1513 3.5 58.5 1.0 N A:ASN27 3.8 19.1 1.0 NH1 A:ARG210 3.8 19.6 1.0 CA A:ILE26 4.2 20.4 1.0 CG1 A:ILE26 4.4 29.0 1.0 C A:ILE26 4.5 16.2 1.0 O A:ASN27 4.6 21.4 1.0 CG1 A:VAL222 4.7 25.4 1.0 ND2 A:ASN27 4.7 39.4 1.0 CA A:ASN27 4.7 17.4 1.0 CB A:ILE26 4.7 20.9 1.0 CB A:ASN27 4.7 22.1 1.0 O A:ASN25 4.8 17.2 1.0 CZ A:ARG210 4.9 23.6 1.0

Iodine binding site 3 out of 38 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:I1206 b:42.0 occ:0.45 O A:HOH1457 3.4 45.6 1.0 CD1 A:LEU151 3.5 39.1 0.5 CB A:PRO167 3.9 25.4 1.0 CD2 A:LEU151 3.9 27.6 0.5 O A:HOH1410 3.9 58.6 1.0 CG A:LEU151 4.1 21.4 0.5 CG2 A:VAL183 4.2 18.4 1.0 CG A:LEU151 4.3 30.3 0.5 CD1 A:LEU151 4.4 16.4 0.5 CD1 A:LEU164 4.4 21.1 1.0 CD2 A:LEU164 4.5 22.9 1.0 CG1 A:VAL87 4.5 33.3 1.0 CE2 A:PHE168 4.6 24.3 1.0 CG2 A:VAL87 4.7 17.2 1.0 CD2 A:LEU151 4.7 13.7 0.5 CB A:VAL87 4.8 25.6 1.0 CG A:PRO167 4.9 34.5 1.0 O A:GLN147 4.9 16.9 1.0 CA A:PRO167 5.0 28.3 1.0 CG A:LEU164 5.0 14.1 1.0

Iodine binding site 4 out of 38 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:I1216 b:35.8 occ:0.60 O A:HOH1492 3.7 55.5 1.0 CD A:LYS14 4.1 43.8 1.0 CE A:LYS14 4.1 32.4 1.0 CG2 A:VAL18 4.2 29.4 1.0 CE A:LYS17 4.2 8.6 1.0 O A:HOH1321 4.5 49.5 1.0 CD A:LYS17 4.9 11.7 1.0 NZ A:LYS17 4.9 8.2 1.0 NZ A:LYS14 4.9 23.5 1.0

Iodine binding site 5 out of 38 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:I1217 b:37.3 occ:0.50 O A:ARG82 2.7 34.3 1.0 O A:HOH1519 2.8 55.1 1.0 O A:HOH1242 3.2 17.1 1.0 O A:HOH1272 3.4 38.5 1.0 C A:ARG82 3.4 28.9 1.0 NH2 A:ARG67 3.6 30.6 1.0 CB A:LYS83 3.7 19.4 1.0 CD2 A:PHE64 3.9 21.6 1.0 CG A:LYS83 4.0 25.5 1.0 CA A:ARG82 4.1 20.4 1.0 N A:LYS83 4.2 12.1 1.0 CA A:LYS83 4.5 13.6 1.0 CZ A:ARG67 4.5 35.1 1.0 CD A:LYS83 4.6 32.0 1.0 NE A:ARG67 4.6 28.5 1.0 CE2 A:PHE64 4.6 24.6 1.0 CB A:PHE64 4.7 14.4 1.0 CG2 A:VAL2 4.7 21.8 1.0 CG A:PHE64 4.7 17.5 1.0 O A:ASP81 4.8 20.5 1.0 O A:LYS83 4.9 12.3 1.0 OG A:SER160 4.9 15.4 1.0 CB A:SER160 4.9 8.7 1.0 C A:LYS83 5.0 18.6 1.0 CB A:ARG82 5.0 18.2 1.0

Iodine binding site 6 out of 38 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:I1218 b:44.4 occ:0.50 O A:HOH1461 3.2 54.7 1.0 N A:PHE88 3.2 30.1 1.0 CB A:PHE88 3.5 39.5 1.0 O A:HOH1464 3.8 56.8 1.0 CA A:PHE88 3.9 34.4 1.0 CB A:TRP91 4.0 41.9 1.0 CD2 A:PHE88 4.0 61.8 1.0 O A:MET86 4.1 20.6 1.0 CA A:TRP91 4.1 34.3 1.0 C A:VAL87 4.2 27.8 1.0 CA A:VAL87 4.2 18.3 1.0 CG A:PHE88 4.3 48.1 1.0 NH2 A:ARG153 4.4 31.6 1.0 C A:MET86 4.5 20.3 1.0 N A:VAL87 4.7 15.6 1.0 C A:PHE88 4.8 25.9 1.0 O A:PHE88 4.8 22.0 1.0 N A:TRP91 4.8 37.5 1.0 O A:HOH1257 4.8 32.5 1.0

Iodine binding site 7 out of 38 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:I1219 b:34.5 occ:0.30 OG A:SER234 3.2 9.8 1.0 O A:HOH1297 3.6 38.0 1.0 CG1 A:VAL220 3.9 23.7 1.0 CB A:SER234 4.0 18.0 1.0 NE2 A:GLN236 4.2 12.2 1.0 CB A:VAL220 4.3 15.7 1.0 CB A:GLN236 4.3 15.2 1.0 CG2 A:VAL220 4.4 15.0 1.0 CG2 A:VAL215 4.5 18.4 1.0 CG2 A:VAL237 4.5 10.3 1.0 CG A:GLN236 4.6 16.7 1.0 CG1 A:VAL215 4.6 23.4 1.0 O A:HOH1350 4.7 33.9 1.0 CB A:VAL215 4.7 14.6 1.0 CD A:GLN236 4.9 31.3 1.0

Iodine binding site 8 out of 38 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:I1227 b:48.5 occ:0.35 N A:ILE304 3.3 14.4 1.0 CG2 A:ILE304 3.5 34.7 1.0 CG2 A:VAL303 3.6 23.3 1.0 OG A:SER334 3.8 18.5 1.0 CA A:VAL303 3.8 17.1 1.0 C A:VAL303 4.1 13.7 1.0 O A:ILE304 4.1 15.1 1.0 CB A:SER334 4.3 30.8 1.0 CB A:VAL303 4.3 22.3 1.0 CA A:ILE304 4.3 19.3 1.0 CB A:ILE304 4.3 22.1 1.0 C A:ILE304 4.7 10.0 1.0 O A:HOH1394 4.7 59.2 1.0 O A:LYS302 4.9 12.9 1.0

Iodine binding site 9 out of 38 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:I1228 b:47.5 occ:0.35 O A:HOH1446 2.4 42.4 1.0 CB A:GLU279 3.8 16.2 1.0 CA A:GLU279 3.9 15.8 1.0 CB A:TYR327 4.0 22.4 1.0 CD1 A:TYR327 4.1 18.7 1.0 N A:GLU279 4.2 11.4 1.0 CG A:TYR327 4.5 19.0 1.0 C A:PRO278 4.7 15.1 1.0 O A:TYR327 4.7 14.4 1.0 O A:PRO278 4.9 15.3 1.0 N A:TYR327 4.9 12.1 1.0 CA A:TYR327 4.9 17.0 1.0 OE1 A:GLU279 5.0 11.7 1.0

Iodine binding site 10 out of 38 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:I1229 b:46.3 occ:0.30 O A:HOH1348 3.0 35.0 1.0 O A:HOH1299 3.6 29.4 1.0 CB A:ALA104 3.8 21.3 1.0 CE2 A:PHE100 4.1 22.1 1.0 CG A:GLU101 4.2 16.3 1.0 O A:HOH1449 4.2 41.9 1.0 O A:HOH1475 4.3 58.0 1.0 CA A:GLU101 4.3 17.1 1.0 CD2 A:PHE100 4.4 22.6 1.0 CB A:GLU101 4.5 23.0 1.0 O A:HOH1510 4.8 58.5 1.0 O A:GLU101 4.9 14.5 1.0

G.Verdon, S.V.Albers, B.W.Dijkstra, A.J.Driessen, A.M.Thunnissen. Crystal Structures of the Atpase Subunit of the Glucose Abc Transporter From Sulfolobus Solfataricus: Nucleotide-Free and Nucleotide-Bound Conformations J.Mol.Biol. V. 330 343 2003.
ISSN: ISSN 0022-2836
PubMed: 12823973
DOI: 10.1016/S0022-2836(03)00575-8