Atomistry » Iodine » PDB 1lkr-1pvh » 1oxx
Atomistry »
  Iodine »
    PDB 1lkr-1pvh »
      1oxx »

Iodine in PDB 1oxx: Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus

Protein crystallography data

The structure of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus, PDB code: 1oxx was solved by G.Verdon, S.-V.Albers, N.Van Oosterwijk, B.W.Dijkstra, A.J.M.Driessen, A.M.W.H.Thunnissen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.52 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.282, 48.427, 183.533, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 21.3

Iodine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 34;

Binding sites:

The binding sites of Iodine atom in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus (pdb code 1oxx). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 34 binding sites of Iodine where determined in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus, PDB code: 1oxx:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 34 in 1oxx

Go back to Iodine Binding Sites List in 1oxx
Iodine binding site 1 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1901

b:14.7
occ:1.00
 O K:HOH2001 3.5 26.4 1.0
O K:HOH2053 3.6 22.4 1.0
N K:LEU295 3.7 4.4 1.0
O K:HOH2029 3.9 28.4 1.0
CB K:LEU295 4.1 6.5 1.0
CA K:ILE294 4.3 7.2 1.0
CG K:LEU295 4.3 12.2 1.0
CD1 K:LEU295 4.4 12.9 1.0
O K:TRP293 4.4 9.9 1.0
C K:ILE294 4.6 5.2 1.0
CA K:LEU295 4.6 4.1 1.0
CE2 K:TYR341 4.7 4.9 1.0
CB K:ILE294 4.9 7.6 1.0

Iodine binding site 2 out of 34 in 1oxx

Go back to Iodine Binding Sites List in 1oxx
Iodine binding site 2 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1902

b:17.0
occ:0.80
 NZ K:LYS17 3.4 6.0 1.0
CE K:LYS17 4.0 4.3 1.0
I K:IOD1903 5.0 29.3 0.7

Iodine binding site 3 out of 34 in 1oxx

Go back to Iodine Binding Sites List in 1oxx
Iodine binding site 3 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1903

b:29.3
occ:0.65
 O K:HOH2342 2.0 29.4 1.0
CE K:LYS17 4.3 4.3 1.0
CE K:LYS14 4.3 32.2 1.0
CD K:LYS14 4.4 23.3 1.0
NZ K:LYS14 4.6 25.5 1.0
CG2 K:VAL18 4.7 15.4 1.0
O K:HOH2257 4.8 29.6 1.0
NZ K:LYS17 4.8 6.0 1.0
CD K:LYS17 4.9 4.5 1.0
I K:IOD1902 5.0 17.0 0.8

Iodine binding site 4 out of 34 in 1oxx

Go back to Iodine Binding Sites List in 1oxx
Iodine binding site 4 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1904

b:24.8
occ:0.40
 O K:HOH2396 2.1 28.3 1.0
CB K:SER40 3.3 14.8 1.0
O K:HOH2007 3.4 24.8 1.0
I K:IOD1933 3.5 25.1 0.3
N K:GLY217 3.5 11.8 1.0
N K:LYS216 3.7 15.9 1.0
O K:LEU214 3.8 13.9 1.0
N K:SER40 4.0 21.8 1.0
C K:LEU214 4.1 10.2 1.0
C K:VAL215 4.2 7.7 1.0
CB K:LEU214 4.2 9.5 1.0
CA K:SER40 4.2 13.9 1.0
CA K:LYS216 4.3 12.6 1.0
CA K:VAL215 4.3 9.6 1.0
CA K:GLY217 4.3 11.1 1.0
N K:VAL215 4.3 9.0 1.0
OG K:SER40 4.3 20.2 1.0
C K:LYS216 4.4 9.9 1.0
CD K:PRO39 4.4 13.9 1.0
O K:SER40 4.6 9.7 1.0
CA K:LEU214 4.8 5.2 1.0
CA K:GLY43 4.9 22.3 1.0
N K:PRO39 4.9 13.8 1.0
C K:SER40 5.0 16.5 1.0
CD1 K:LEU214 5.0 13.3 0.5

Iodine binding site 5 out of 34 in 1oxx

Go back to Iodine Binding Sites List in 1oxx
Iodine binding site 5 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1905

b:16.6
occ:0.30
 O K:HOH2556 1.8 46.1 1.0
O K:HOH2087 3.4 22.7 1.0
CE K:MET110 3.5 18.3 1.0
O K:HOH2271 3.7 35.2 1.0
CB K:LYS157 4.1 9.8 1.0
CA K:LYS157 4.1 5.9 1.0
CG K:LYS157 4.1 16.0 0.5
CG K:LYS157 4.1 8.7 0.5
CB K:MET110 4.2 10.6 1.0
CG K:MET110 4.3 12.8 1.0
O K:LYS157 4.3 13.4 1.0
SD K:MET112 4.4 12.2 1.0
CD2 K:LEU107 4.4 7.3 1.0
C K:LYS157 4.6 14.9 1.0
CD K:LYS157 4.6 10.6 0.5
SD K:MET110 4.7 18.3 1.0
CE K:LYS157 4.8 18.4 0.5

Iodine binding site 6 out of 34 in 1oxx

Go back to Iodine Binding Sites List in 1oxx
Iodine binding site 6 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1906

b:27.6
occ:1.00
 I K:IOD1906 0.0 27.6 1.0
NH2 K:ARG189 3.2 29.1 1.0
I K:IOD1906 3.2 52.4 0.3
NH1 K:ARG189 3.4 19.0 1.0
O K:HOH2013 3.5 23.7 1.0
CZ K:ARG189 3.8 22.1 1.0
CD1 K:LEU155 4.1 10.9 1.0
CD1 K:ILE127 4.2 19.5 1.0
CB K:LEU155 4.3 6.7 1.0
CG1 K:VAL124 4.3 10.3 1.0
CG2 K:VAL124 4.4 12.7 1.0
CD1 K:LEU190 4.4 10.3 1.0
CD2 K:LEU190 4.4 9.8 1.0
CG2 K:ILE127 4.5 18.6 1.0
NH2 K:ARG120 4.6 12.7 1.0
CB K:VAL124 4.8 8.7 1.0
CG K:LEU155 4.8 6.8 1.0
CG K:LEU190 4.9 7.1 1.0
CA K:VAL124 4.9 6.7 1.0
CB K:ILE127 4.9 10.2 1.0
O K:HOH2320 5.0 36.7 1.0
O K:LEU155 5.0 6.2 1.0

Iodine binding site 7 out of 34 in 1oxx

Go back to Iodine Binding Sites List in 1oxx
Iodine binding site 7 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1906

b:52.4
occ:0.30
 I K:IOD1906 0.0 52.4 0.3
NH1 K:ARG120 2.8 13.5 1.0
O K:HOH2320 3.1 36.7 1.0
I K:IOD1906 3.2 27.6 1.0
NH2 K:ARG120 3.7 12.7 1.0
CZ K:ARG120 3.7 11.3 1.0
CD1 K:ILE127 3.8 19.5 1.0
O K:HOH2013 4.1 23.7 1.0
NH1 K:ARG189 4.3 19.0 1.0
O K:HOH2623 4.4 30.7 1.0
CD K:GLU123 4.5 25.3 1.0
O K:HOH2189 4.5 32.1 1.0
OE1 K:GLU123 4.5 19.8 1.0
CG2 K:VAL124 4.6 12.7 1.0
CG K:GLU123 4.7 20.9 1.0
O K:HOH2197 4.7 42.9 1.0
O K:HOH2622 4.8 33.1 1.0
OE2 K:GLU123 4.9 43.1 1.0
CD2 K:LEU190 4.9 9.8 1.0
NE K:ARG120 5.0 8.5 1.0
OD1 K:ASP158 5.0 23.0 1.0

Iodine binding site 8 out of 34 in 1oxx

Go back to Iodine Binding Sites List in 1oxx
Iodine binding site 8 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1908

b:19.0
occ:0.40
 NE K:ARG67 3.3 6.1 0.5
O K:HOH1952 3.6 14.4 1.0
O K:ASP81 3.8 17.7 1.0
CD K:ARG67 4.0 16.8 0.5
CG1 K:VAL69 4.0 7.0 1.0
O K:HOH2594 4.0 54.6 1.0
CB K:PHE64 4.1 8.2 1.0
CZ K:ARG67 4.1 23.5 0.5
CG1 K:VAL77 4.1 9.7 1.0
CA K:ARG82 4.1 10.6 1.0
NH2 K:ARG67 4.2 12.0 0.5
CD2 K:PHE64 4.5 5.5 1.0
CG K:ARG67 4.6 7.5 0.5
CG K:ARG82 4.6 7.2 1.0
CG K:PHE64 4.6 4.7 1.0
C K:ASP81 4.7 13.7 1.0
CB K:ARG67 4.7 3.4 0.5
CD K:ARG67 4.8 13.7 0.5
CB K:ARG82 4.8 9.0 1.0
C K:ARG82 4.8 11.4 1.0
CG2 K:VAL77 4.8 8.6 1.0
O K:ARG82 4.8 12.0 1.0
CB K:VAL77 4.8 8.7 1.0
NH1 K:ARG67 4.9 9.2 0.5
CG K:ARG67 4.9 13.3 0.5
N K:ARG82 4.9 9.3 1.0

Iodine binding site 9 out of 34 in 1oxx

Go back to Iodine Binding Sites List in 1oxx
Iodine binding site 9 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1909

b:24.7
occ:0.70
 N K:ASN96 3.6 3.8 1.0
CB K:TYR94 3.7 13.7 1.0
CD2 K:TYR94 3.7 35.5 1.0
CB K:ASN96 3.8 6.1 1.0
CD K:PRO95 4.0 6.3 1.0
CA K:ASN96 4.0 5.9 1.0
N K:PRO95 4.1 5.0 1.0
CG K:TYR94 4.1 23.9 1.0
C K:TYR94 4.2 6.8 1.0
CA K:TYR94 4.2 9.5 1.0
CG K:PRO95 4.3 12.2 1.0
C K:ASN96 4.3 9.2 1.0
N K:LEU97 4.5 6.1 1.0
C K:PRO95 4.7 7.5 1.0
CG K:LEU97 4.8 9.5 1.0
CE2 K:TYR94 4.8 26.5 1.0
O K:TYR94 4.8 8.8 1.0
O K:ASN96 4.8 9.4 1.0
CA K:PRO95 4.9 7.0 1.0

Iodine binding site 10 out of 34 in 1oxx

Go back to Iodine Binding Sites List in 1oxx
Iodine binding site 10 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1910

b:28.3
occ:0.50
 O K:HOH2205 3.0 22.2 1.0
OG K:SER234 3.2 8.5 1.0
O K:HOH2349 3.5 34.8 1.0
O K:HOH2406 3.7 33.9 1.0
O K:HOH2432 3.8 36.7 1.0
CB K:SER234 3.8 6.7 1.0
CG1 K:VAL220 3.9 7.3 1.0
CG2 K:VAL220 4.0 7.3 1.0
CB K:VAL220 4.1 4.9 1.0
CG2 K:VAL215 4.3 12.7 1.0
O K:HOH2347 4.3 39.0 1.0
CG2 K:VAL237 4.5 8.3 1.0
CB K:VAL215 4.5 9.7 1.0
CG1 K:VAL215 4.5 12.4 1.0
NE2 K:GLN236 4.5 20.5 1.0
CB K:GLN236 4.6 10.9 1.0
O K:HOH2024 4.7 26.1 1.0
CG1 K:VAL233 5.0 7.1 1.0

Reference:

G.Verdon, S.-V.Albers, N.Van Oosterwijk, B.W.Dijkstra, A.J.M.Driessen, A.M.W.H.Thunnissen. Formation of the Productive Atp-MG2+-Bound Dimer of Glcv, An Abc-Atpase From Sulfolobus Solfataricus J.Mol.Biol. V. 334 255 2003.
ISSN: ISSN 0022-2836
PubMed: 14607117
DOI: 10.1016/J.JMB.2003.08.065
Page generated: Sun Dec 13 19:20:45 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy