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Iodine in PDB 1oxx: Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus

Protein crystallography data

The structure of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus, PDB code: 1oxx was solved by G.Verdon, S.-V.Albers, N.Van Oosterwijk, B.W.Dijkstra, A.J.M.Driessen, A.M.W.H.Thunnissen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.52 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.282, 48.427, 183.533, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 21.3

Iodine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 34;

Binding sites:

The binding sites of Iodine atom in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus (pdb code 1oxx). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 34 binding sites of Iodine where determined in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus, PDB code: 1oxx:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 34 in 1oxx

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Iodine binding site 1 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1901

b:14.7
occ:1.00
 O K:HOH2001 3.5 26.4 1.0
O K:HOH2053 3.6 22.4 1.0
N K:LEU295 3.7 4.4 1.0
O K:HOH2029 3.9 28.4 1.0
CB K:LEU295 4.1 6.5 1.0
CA K:ILE294 4.3 7.2 1.0
CG K:LEU295 4.3 12.2 1.0
CD1 K:LEU295 4.4 12.9 1.0
O K:TRP293 4.4 9.9 1.0
C K:ILE294 4.6 5.2 1.0
CA K:LEU295 4.6 4.1 1.0
CE2 K:TYR341 4.7 4.9 1.0
CB K:ILE294 4.9 7.6 1.0

Iodine binding site 2 out of 34 in 1oxx

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Iodine binding site 2 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1902

b:17.0
occ:0.80
 NZ K:LYS17 3.4 6.0 1.0
CE K:LYS17 4.0 4.3 1.0
I K:IOD1903 5.0 29.3 0.7

Iodine binding site 3 out of 34 in 1oxx

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Iodine binding site 3 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1903

b:29.3
occ:0.65
 O K:HOH2342 2.0 29.4 1.0
CE K:LYS17 4.3 4.3 1.0
CE K:LYS14 4.3 32.2 1.0
CD K:LYS14 4.4 23.3 1.0
NZ K:LYS14 4.6 25.5 1.0
CG2 K:VAL18 4.7 15.4 1.0
O K:HOH2257 4.8 29.6 1.0
NZ K:LYS17 4.8 6.0 1.0
CD K:LYS17 4.9 4.5 1.0
I K:IOD1902 5.0 17.0 0.8

Iodine binding site 4 out of 34 in 1oxx

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Iodine binding site 4 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1904

b:24.8
occ:0.40
 O K:HOH2396 2.1 28.3 1.0
CB K:SER40 3.3 14.8 1.0
O K:HOH2007 3.4 24.8 1.0
I K:IOD1933 3.5 25.1 0.3
N K:GLY217 3.5 11.8 1.0
N K:LYS216 3.7 15.9 1.0
O K:LEU214 3.8 13.9 1.0
N K:SER40 4.0 21.8 1.0
C K:LEU214 4.1 10.2 1.0
C K:VAL215 4.2 7.7 1.0
CB K:LEU214 4.2 9.5 1.0
CA K:SER40 4.2 13.9 1.0
CA K:LYS216 4.3 12.6 1.0
CA K:VAL215 4.3 9.6 1.0
CA K:GLY217 4.3 11.1 1.0
N K:VAL215 4.3 9.0 1.0
OG K:SER40 4.3 20.2 1.0
C K:LYS216 4.4 9.9 1.0
CD K:PRO39 4.4 13.9 1.0
O K:SER40 4.6 9.7 1.0
CA K:LEU214 4.8 5.2 1.0
CA K:GLY43 4.9 22.3 1.0
N K:PRO39 4.9 13.8 1.0
C K:SER40 5.0 16.5 1.0
CD1 K:LEU214 5.0 13.3 0.5

Iodine binding site 5 out of 34 in 1oxx

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Iodine binding site 5 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1905

b:16.6
occ:0.30
 O K:HOH2556 1.8 46.1 1.0
O K:HOH2087 3.4 22.7 1.0
CE K:MET110 3.5 18.3 1.0
O K:HOH2271 3.7 35.2 1.0
CB K:LYS157 4.1 9.8 1.0
CA K:LYS157 4.1 5.9 1.0
CG K:LYS157 4.1 16.0 0.5
CG K:LYS157 4.1 8.7 0.5
CB K:MET110 4.2 10.6 1.0
CG K:MET110 4.3 12.8 1.0
O K:LYS157 4.3 13.4 1.0
SD K:MET112 4.4 12.2 1.0
CD2 K:LEU107 4.4 7.3 1.0
C K:LYS157 4.6 14.9 1.0
CD K:LYS157 4.6 10.6 0.5
SD K:MET110 4.7 18.3 1.0
CE K:LYS157 4.8 18.4 0.5

Iodine binding site 6 out of 34 in 1oxx

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Iodine binding site 6 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1906

b:27.6
occ:1.00
 I K:IOD1906 0.0 27.6 1.0
NH2 K:ARG189 3.2 29.1 1.0
I K:IOD1906 3.2 52.4 0.3
NH1 K:ARG189 3.4 19.0 1.0
O K:HOH2013 3.5 23.7 1.0
CZ K:ARG189 3.8 22.1 1.0
CD1 K:LEU155 4.1 10.9 1.0
CD1 K:ILE127 4.2 19.5 1.0
CB K:LEU155 4.3 6.7 1.0
CG1 K:VAL124 4.3 10.3 1.0
CG2 K:VAL124 4.4 12.7 1.0
CD1 K:LEU190 4.4 10.3 1.0
CD2 K:LEU190 4.4 9.8 1.0
CG2 K:ILE127 4.5 18.6 1.0
NH2 K:ARG120 4.6 12.7 1.0
CB K:VAL124 4.8 8.7 1.0
CG K:LEU155 4.8 6.8 1.0
CG K:LEU190 4.9 7.1 1.0
CA K:VAL124 4.9 6.7 1.0
CB K:ILE127 4.9 10.2 1.0
O K:HOH2320 5.0 36.7 1.0
O K:LEU155 5.0 6.2 1.0

Iodine binding site 7 out of 34 in 1oxx

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Iodine binding site 7 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1906

b:52.4
occ:0.30
 I K:IOD1906 0.0 52.4 0.3
NH1 K:ARG120 2.8 13.5 1.0
O K:HOH2320 3.1 36.7 1.0
I K:IOD1906 3.2 27.6 1.0
NH2 K:ARG120 3.7 12.7 1.0
CZ K:ARG120 3.7 11.3 1.0
CD1 K:ILE127 3.8 19.5 1.0
O K:HOH2013 4.1 23.7 1.0
NH1 K:ARG189 4.3 19.0 1.0
O K:HOH2623 4.4 30.7 1.0
CD K:GLU123 4.5 25.3 1.0
O K:HOH2189 4.5 32.1 1.0
OE1 K:GLU123 4.5 19.8 1.0
CG2 K:VAL124 4.6 12.7 1.0
CG K:GLU123 4.7 20.9 1.0
O K:HOH2197 4.7 42.9 1.0
O K:HOH2622 4.8 33.1 1.0
OE2 K:GLU123 4.9 43.1 1.0
CD2 K:LEU190 4.9 9.8 1.0
NE K:ARG120 5.0 8.5 1.0
OD1 K:ASP158 5.0 23.0 1.0

Iodine binding site 8 out of 34 in 1oxx

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Iodine binding site 8 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1908

b:19.0
occ:0.40
 NE K:ARG67 3.3 6.1 0.5
O K:HOH1952 3.6 14.4 1.0
O K:ASP81 3.8 17.7 1.0
CD K:ARG67 4.0 16.8 0.5
CG1 K:VAL69 4.0 7.0 1.0
O K:HOH2594 4.0 54.6 1.0
CB K:PHE64 4.1 8.2 1.0
CZ K:ARG67 4.1 23.5 0.5
CG1 K:VAL77 4.1 9.7 1.0
CA K:ARG82 4.1 10.6 1.0
NH2 K:ARG67 4.2 12.0 0.5
CD2 K:PHE64 4.5 5.5 1.0
CG K:ARG67 4.6 7.5 0.5
CG K:ARG82 4.6 7.2 1.0
CG K:PHE64 4.6 4.7 1.0
C K:ASP81 4.7 13.7 1.0
CB K:ARG67 4.7 3.4 0.5
CD K:ARG67 4.8 13.7 0.5
CB K:ARG82 4.8 9.0 1.0
C K:ARG82 4.8 11.4 1.0
CG2 K:VAL77 4.8 8.6 1.0
O K:ARG82 4.8 12.0 1.0
CB K:VAL77 4.8 8.7 1.0
NH1 K:ARG67 4.9 9.2 0.5
CG K:ARG67 4.9 13.3 0.5
N K:ARG82 4.9 9.3 1.0

Iodine binding site 9 out of 34 in 1oxx

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Iodine binding site 9 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1909

b:24.7
occ:0.70
 N K:ASN96 3.6 3.8 1.0
CB K:TYR94 3.7 13.7 1.0
CD2 K:TYR94 3.7 35.5 1.0
CB K:ASN96 3.8 6.1 1.0
CD K:PRO95 4.0 6.3 1.0
CA K:ASN96 4.0 5.9 1.0
N K:PRO95 4.1 5.0 1.0
CG K:TYR94 4.1 23.9 1.0
C K:TYR94 4.2 6.8 1.0
CA K:TYR94 4.2 9.5 1.0
CG K:PRO95 4.3 12.2 1.0
C K:ASN96 4.3 9.2 1.0
N K:LEU97 4.5 6.1 1.0
C K:PRO95 4.7 7.5 1.0
CG K:LEU97 4.8 9.5 1.0
CE2 K:TYR94 4.8 26.5 1.0
O K:TYR94 4.8 8.8 1.0
O K:ASN96 4.8 9.4 1.0
CA K:PRO95 4.9 7.0 1.0

Iodine binding site 10 out of 34 in 1oxx

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Iodine binding site 10 out of 34 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:I1910

b:28.3
occ:0.50
 O K:HOH2205 3.0 22.2 1.0
OG K:SER234 3.2 8.5 1.0
O K:HOH2349 3.5 34.8 1.0
O K:HOH2406 3.7 33.9 1.0
O K:HOH2432 3.8 36.7 1.0
CB K:SER234 3.8 6.7 1.0
CG1 K:VAL220 3.9 7.3 1.0
CG2 K:VAL220 4.0 7.3 1.0
CB K:VAL220 4.1 4.9 1.0
CG2 K:VAL215 4.3 12.7 1.0
O K:HOH2347 4.3 39.0 1.0
CG2 K:VAL237 4.5 8.3 1.0
CB K:VAL215 4.5 9.7 1.0
CG1 K:VAL215 4.5 12.4 1.0
NE2 K:GLN236 4.5 20.5 1.0
CB K:GLN236 4.6 10.9 1.0
O K:HOH2024 4.7 26.1 1.0
CG1 K:VAL233 5.0 7.1 1.0

Reference:

G.Verdon, S.-V.Albers, N.Van Oosterwijk, B.W.Dijkstra, A.J.M.Driessen, A.M.W.H.Thunnissen. Formation of the Productive Atp-MG2+-Bound Dimer of Glcv, An Abc-Atpase From Sulfolobus Solfataricus J.Mol.Biol. V. 334 255 2003.
ISSN: ISSN 0022-2836
PubMed: 14607117
DOI: 10.1016/J.JMB.2003.08.065
Page generated: Sun Aug 11 12:34:49 2024

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