Iodine in PDB 1sn5: Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution
Protein crystallography data
The structure of Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution, PDB code: 1sn5
was solved by
T.Eneqvist,
E.Lundberg,
A.Karlsson,
S.Huang,
C.R.Cantos,
D.M.Power,
A.E.Sauer-Eriksson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.76 /
1.90
|
Space group
|
P 41
|
Cell size a, b, c (Å), α, β, γ (°)
|
58.284,
58.284,
138.904,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.3 /
21.1
|
Iodine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
15;
Binding sites:
The binding sites of Iodine atom in the Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution
(pdb code 1sn5). This binding sites where shown within
5.0 Angstroms radius around Iodine atom.
In total 15 binding sites of Iodine where determined in the
Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution, PDB code: 1sn5:
Jump to Iodine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iodine binding site 1 out
of 15 in 1sn5
Go back to
Iodine Binding Sites List in 1sn5
Iodine binding site 1 out
of 15 in the Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 1 of Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I601
b:19.4
occ:0.40
|
I1
|
C:T3601
|
0.0
|
19.4
|
0.4
|
I1
|
C:T3601
|
0.4
|
34.2
|
0.2
|
I3
|
C:T3601
|
0.9
|
25.8
|
0.4
|
C9
|
C:T3601
|
1.4
|
28.1
|
0.4
|
C5
|
C:T3601
|
1.9
|
34.8
|
0.2
|
C5
|
C:T3601
|
2.1
|
23.7
|
0.4
|
C7
|
C:T3601
|
2.4
|
28.0
|
0.4
|
C11
|
C:T3601
|
2.5
|
29.0
|
0.4
|
O2
|
C:T3601
|
2.8
|
28.9
|
0.4
|
C7
|
C:T3601
|
2.9
|
33.6
|
0.2
|
C3
|
C:T3601
|
2.9
|
36.1
|
0.2
|
C3
|
C:T3601
|
3.0
|
24.6
|
0.4
|
C7
|
C:T3601
|
3.0
|
23.5
|
0.4
|
O2
|
C:T3601
|
3.1
|
29.7
|
0.2
|
O2
|
C:T3601
|
3.1
|
25.5
|
0.4
|
C2
|
C:T3601
|
3.4
|
30.4
|
0.4
|
C12
|
C:T3601
|
3.5
|
30.7
|
0.4
|
C2
|
C:T3601
|
3.6
|
25.9
|
0.2
|
C2
|
C:T3601
|
3.6
|
28.0
|
0.4
|
C1
|
C:T3601
|
3.7
|
30.1
|
0.4
|
C5
|
C:T3601
|
3.7
|
28.0
|
0.4
|
C4
|
C:T3601
|
4.0
|
23.7
|
0.2
|
C3
|
C:T3601
|
4.1
|
29.3
|
0.4
|
C12
|
C:T3601
|
4.1
|
28.1
|
0.4
|
O
|
C:HOH662
|
4.2
|
37.4
|
1.0
|
CG2
|
A:THR106
|
4.2
|
11.1
|
1.0
|
C1
|
C:T3601
|
4.2
|
37.3
|
0.2
|
C4
|
C:T3601
|
4.2
|
29.1
|
0.4
|
C9
|
C:T3601
|
4.3
|
35.5
|
0.2
|
CB
|
A:LYS15
|
4.3
|
11.4
|
1.0
|
C1
|
C:T3601
|
4.3
|
26.6
|
0.4
|
CD1
|
C:LEU17
|
4.3
|
13.6
|
1.0
|
C4
|
C:T3601
|
4.3
|
31.0
|
0.4
|
C12
|
C:T3601
|
4.4
|
25.0
|
0.2
|
CB
|
A:ALA108
|
4.4
|
11.1
|
1.0
|
CG
|
A:LYS15
|
4.4
|
12.2
|
1.0
|
C9
|
C:T3601
|
4.4
|
23.6
|
0.4
|
CG2
|
A:VAL121
|
4.5
|
12.2
|
1.0
|
C10
|
C:T3601
|
4.7
|
30.5
|
0.4
|
C11
|
C:T3601
|
4.8
|
36.6
|
0.2
|
C11
|
C:T3601
|
4.9
|
24.7
|
0.4
|
CE
|
C:LYS15
|
5.0
|
15.9
|
1.0
|
|
Iodine binding site 2 out
of 15 in 1sn5
Go back to
Iodine Binding Sites List in 1sn5
Iodine binding site 2 out
of 15 in the Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 2 of Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I601
b:25.2
occ:0.40
|
I1
|
C:T3601
|
0.0
|
25.2
|
0.4
|
I3
|
C:T3601
|
0.6
|
21.0
|
0.4
|
I3
|
C:T3601
|
0.8
|
38.1
|
0.2
|
C9
|
C:T3601
|
1.6
|
23.6
|
0.4
|
C9
|
C:T3601
|
1.8
|
35.5
|
0.2
|
C5
|
C:T3601
|
2.1
|
28.0
|
0.4
|
C7
|
C:T3601
|
2.5
|
23.5
|
0.4
|
C7
|
C:T3601
|
2.6
|
33.6
|
0.2
|
C11
|
C:T3601
|
2.7
|
24.7
|
0.4
|
O2
|
C:T3601
|
2.8
|
25.5
|
0.4
|
O2
|
C:T3601
|
2.8
|
29.7
|
0.2
|
C11
|
C:T3601
|
2.9
|
36.6
|
0.2
|
C3
|
C:T3601
|
3.1
|
29.3
|
0.4
|
C7
|
C:T3601
|
3.1
|
28.0
|
0.4
|
O2
|
C:T3601
|
3.2
|
28.9
|
0.4
|
C2
|
C:T3601
|
3.3
|
28.0
|
0.4
|
C2
|
C:T3601
|
3.4
|
25.9
|
0.2
|
C12
|
C:T3601
|
3.6
|
28.1
|
0.4
|
C2
|
C:T3601
|
3.6
|
30.4
|
0.4
|
C4
|
C:T3601
|
3.8
|
23.7
|
0.2
|
C5
|
C:T3601
|
3.9
|
23.7
|
0.4
|
C12
|
C:T3601
|
4.0
|
30.7
|
0.4
|
C1
|
C:T3601
|
4.0
|
26.6
|
0.4
|
C5
|
C:T3601
|
4.0
|
34.8
|
0.2
|
CG2
|
C:VAL121
|
4.1
|
20.7
|
1.0
|
C1
|
C:T3601
|
4.1
|
37.3
|
0.2
|
C12
|
C:T3601
|
4.2
|
25.0
|
0.2
|
CD1
|
A:LEU17
|
4.3
|
14.1
|
1.0
|
C4
|
C:T3601
|
4.3
|
29.1
|
0.4
|
CG2
|
C:THR106
|
4.3
|
16.7
|
1.0
|
C4
|
C:T3601
|
4.4
|
31.0
|
0.4
|
CD2
|
A:LEU17
|
4.4
|
14.4
|
1.0
|
CB
|
C:ALA108
|
4.4
|
12.5
|
1.0
|
C1
|
C:T3601
|
4.4
|
30.1
|
0.4
|
C3
|
C:T3601
|
4.5
|
24.6
|
0.4
|
CE
|
A:LYS15
|
4.5
|
15.2
|
1.0
|
C9
|
C:T3601
|
4.5
|
28.1
|
0.4
|
C3
|
C:T3601
|
4.6
|
36.1
|
0.2
|
CB
|
C:LYS15
|
4.7
|
13.1
|
1.0
|
C10
|
C:T3601
|
4.8
|
28.5
|
0.4
|
C6
|
C:T3601
|
4.9
|
21.5
|
0.2
|
CG
|
A:LYS15
|
4.9
|
12.2
|
1.0
|
CG
|
A:LEU17
|
4.9
|
13.3
|
1.0
|
CB
|
C:THR106
|
5.0
|
16.9
|
1.0
|
CG
|
C:LYS15
|
5.0
|
13.4
|
1.0
|
C10
|
C:T3601
|
5.0
|
30.5
|
0.4
|
|
Iodine binding site 3 out
of 15 in 1sn5
Go back to
Iodine Binding Sites List in 1sn5
Iodine binding site 3 out
of 15 in the Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 3 of Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I601
b:34.2
occ:0.20
|
I1
|
C:T3601
|
0.0
|
34.2
|
0.2
|
I1
|
C:T3601
|
0.4
|
19.4
|
0.4
|
I3
|
C:T3601
|
0.6
|
25.8
|
0.4
|
C9
|
C:T3601
|
1.6
|
28.1
|
0.4
|
C5
|
C:T3601
|
2.1
|
34.8
|
0.2
|
C5
|
C:T3601
|
2.3
|
23.7
|
0.4
|
C7
|
C:T3601
|
2.6
|
28.0
|
0.4
|
C11
|
C:T3601
|
2.7
|
29.0
|
0.4
|
O2
|
C:T3601
|
2.9
|
28.9
|
0.4
|
C3
|
C:T3601
|
3.1
|
36.1
|
0.2
|
C7
|
C:T3601
|
3.1
|
33.6
|
0.2
|
C3
|
C:T3601
|
3.2
|
24.6
|
0.4
|
C7
|
C:T3601
|
3.2
|
23.5
|
0.4
|
O2
|
C:T3601
|
3.3
|
29.7
|
0.2
|
O2
|
C:T3601
|
3.3
|
25.5
|
0.4
|
C2
|
C:T3601
|
3.4
|
30.4
|
0.4
|
C2
|
C:T3601
|
3.6
|
28.0
|
0.4
|
C2
|
C:T3601
|
3.7
|
25.9
|
0.2
|
C12
|
C:T3601
|
3.7
|
30.7
|
0.4
|
C4
|
C:T3601
|
4.0
|
23.7
|
0.2
|
C5
|
C:T3601
|
4.0
|
28.0
|
0.4
|
C1
|
C:T3601
|
4.0
|
30.1
|
0.4
|
CD1
|
C:LEU17
|
4.0
|
13.6
|
1.0
|
C12
|
C:T3601
|
4.0
|
28.1
|
0.4
|
O
|
C:HOH662
|
4.1
|
37.4
|
1.0
|
CG2
|
A:VAL121
|
4.2
|
12.2
|
1.0
|
C4
|
C:T3601
|
4.2
|
29.1
|
0.4
|
C4
|
C:T3601
|
4.3
|
31.0
|
0.4
|
CG2
|
A:THR106
|
4.3
|
11.1
|
1.0
|
CB
|
A:ALA108
|
4.4
|
11.1
|
1.0
|
C3
|
C:T3601
|
4.4
|
29.3
|
0.4
|
C1
|
C:T3601
|
4.4
|
37.3
|
0.2
|
C12
|
C:T3601
|
4.5
|
25.0
|
0.2
|
C9
|
C:T3601
|
4.5
|
35.5
|
0.2
|
C1
|
C:T3601
|
4.5
|
26.6
|
0.4
|
C9
|
C:T3601
|
4.6
|
23.6
|
0.4
|
CB
|
A:LYS15
|
4.6
|
11.4
|
1.0
|
CD2
|
C:LEU17
|
4.7
|
13.9
|
1.0
|
CG
|
A:LYS15
|
4.8
|
12.2
|
1.0
|
C10
|
C:T3601
|
4.8
|
30.5
|
0.4
|
CE
|
C:LYS15
|
4.8
|
15.9
|
1.0
|
CG
|
C:LEU17
|
4.9
|
12.6
|
1.0
|
C6
|
C:T3601
|
4.9
|
21.5
|
0.2
|
C11
|
C:T3601
|
5.0
|
36.6
|
0.2
|
C10
|
C:T3601
|
5.0
|
28.5
|
0.4
|
|
Iodine binding site 4 out
of 15 in 1sn5
Go back to
Iodine Binding Sites List in 1sn5
Iodine binding site 4 out
of 15 in the Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 4 of Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I601
b:35.7
occ:0.40
|
I2
|
C:T3601
|
0.0
|
35.7
|
0.4
|
O1
|
C:T3601
|
0.8
|
22.9
|
0.2
|
I2
|
C:T3601
|
0.9
|
35.1
|
0.4
|
C8
|
C:T3601
|
1.5
|
22.6
|
0.2
|
C6
|
C:T3601
|
1.8
|
31.6
|
0.4
|
C6
|
C:T3601
|
2.1
|
30.1
|
0.4
|
C10
|
C:T3601
|
2.1
|
23.6
|
0.2
|
C8
|
C:T3601
|
2.7
|
30.6
|
0.4
|
O
|
A:HOH714
|
2.8
|
14.4
|
1.0
|
C6
|
C:T3601
|
2.8
|
21.5
|
0.2
|
C4
|
C:T3601
|
2.9
|
31.0
|
0.4
|
O1
|
C:T3601
|
2.9
|
28.9
|
0.4
|
C4
|
C:T3601
|
3.0
|
29.1
|
0.4
|
O
|
C:HOH613
|
3.2
|
34.5
|
1.0
|
C8
|
C:T3601
|
3.2
|
29.7
|
0.4
|
C12
|
C:T3601
|
3.4
|
25.0
|
0.2
|
O1
|
C:T3601
|
3.4
|
29.8
|
0.4
|
C4
|
C:T3601
|
3.9
|
23.7
|
0.2
|
I2
|
C:T3601
|
3.9
|
16.9
|
0.2
|
C10
|
C:T3601
|
4.0
|
30.5
|
0.4
|
C2
|
C:T3601
|
4.1
|
30.4
|
0.4
|
C2
|
C:T3601
|
4.1
|
25.9
|
0.2
|
C2
|
C:T3601
|
4.3
|
28.0
|
0.4
|
CB
|
A:ALA108
|
4.5
|
11.1
|
1.0
|
C10
|
C:T3601
|
4.5
|
28.5
|
0.4
|
CD2
|
C:LEU110
|
4.5
|
12.5
|
1.0
|
OG1
|
A:THR119
|
4.5
|
9.2
|
1.0
|
CB
|
A:LEU110
|
4.6
|
10.3
|
1.0
|
C12
|
C:T3601
|
4.6
|
30.7
|
0.4
|
CB
|
C:LEU110
|
4.7
|
10.8
|
1.0
|
CD1
|
C:LEU17
|
4.8
|
13.6
|
1.0
|
CD2
|
A:LEU110
|
4.9
|
13.2
|
1.0
|
C12
|
C:T3601
|
4.9
|
28.1
|
0.4
|
CD1
|
A:LEU17
|
5.0
|
14.1
|
1.0
|
CG
|
C:LEU110
|
5.0
|
10.9
|
1.0
|
|
Iodine binding site 5 out
of 15 in 1sn5
Go back to
Iodine Binding Sites List in 1sn5
Iodine binding site 5 out
of 15 in the Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 5 of Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I601
b:35.1
occ:0.40
|
I2
|
C:T3601
|
0.0
|
35.1
|
0.4
|
O1
|
C:T3601
|
0.2
|
22.9
|
0.2
|
I2
|
C:T3601
|
0.9
|
35.7
|
0.4
|
C8
|
C:T3601
|
1.5
|
22.6
|
0.2
|
C6
|
C:T3601
|
2.0
|
30.1
|
0.4
|
C6
|
C:T3601
|
2.1
|
31.6
|
0.4
|
O
|
C:HOH613
|
2.3
|
34.5
|
1.0
|
C10
|
C:T3601
|
2.5
|
23.6
|
0.2
|
C6
|
C:T3601
|
2.6
|
21.5
|
0.2
|
C8
|
C:T3601
|
2.9
|
29.7
|
0.4
|
O1
|
C:T3601
|
3.0
|
29.8
|
0.4
|
C4
|
C:T3601
|
3.0
|
31.0
|
0.4
|
C4
|
C:T3601
|
3.1
|
29.1
|
0.4
|
C8
|
C:T3601
|
3.2
|
30.6
|
0.4
|
O1
|
C:T3601
|
3.4
|
28.9
|
0.4
|
I2
|
C:T3601
|
3.5
|
16.9
|
0.2
|
O
|
A:HOH714
|
3.5
|
14.4
|
1.0
|
C12
|
C:T3601
|
3.7
|
25.0
|
0.2
|
C4
|
C:T3601
|
3.9
|
23.7
|
0.2
|
C10
|
C:T3601
|
4.2
|
28.5
|
0.4
|
C2
|
C:T3601
|
4.3
|
25.9
|
0.2
|
C2
|
C:T3601
|
4.3
|
30.4
|
0.4
|
C2
|
C:T3601
|
4.3
|
28.0
|
0.4
|
CB
|
C:LEU110
|
4.3
|
10.8
|
1.0
|
C10
|
C:T3601
|
4.5
|
30.5
|
0.4
|
CD2
|
A:LEU110
|
4.5
|
13.2
|
1.0
|
CD2
|
C:LEU110
|
4.5
|
12.5
|
1.0
|
CB
|
A:LEU110
|
4.7
|
10.3
|
1.0
|
CB
|
C:ALA108
|
4.8
|
12.5
|
1.0
|
OG1
|
C:THR119
|
4.8
|
6.6
|
0.5
|
C12
|
C:T3601
|
4.8
|
28.1
|
0.4
|
CD1
|
A:LEU17
|
4.8
|
14.1
|
1.0
|
CG
|
C:LEU110
|
4.9
|
10.9
|
1.0
|
C12
|
C:T3601
|
4.9
|
30.7
|
0.4
|
|
Iodine binding site 6 out
of 15 in 1sn5
Go back to
Iodine Binding Sites List in 1sn5
Iodine binding site 6 out
of 15 in the Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 6 of Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I601
b:16.9
occ:0.20
|
I2
|
C:T3601
|
0.0
|
16.9
|
0.2
|
O1
|
C:T3601
|
0.8
|
29.8
|
0.4
|
C8
|
C:T3601
|
1.0
|
29.7
|
0.4
|
C10
|
C:T3601
|
1.6
|
28.5
|
0.4
|
C6
|
C:T3601
|
2.1
|
21.5
|
0.2
|
C6
|
C:T3601
|
2.4
|
30.1
|
0.4
|
C12
|
C:T3601
|
2.9
|
28.1
|
0.4
|
C4
|
C:T3601
|
2.9
|
23.7
|
0.2
|
O
|
C:LEU109
|
3.0
|
13.5
|
1.0
|
C8
|
C:T3601
|
3.2
|
22.6
|
0.2
|
C4
|
C:T3601
|
3.3
|
31.0
|
0.4
|
N
|
C:LEU109
|
3.4
|
12.8
|
1.0
|
O1
|
C:T3601
|
3.4
|
22.9
|
0.2
|
O
|
C:LYS15
|
3.4
|
11.6
|
1.0
|
C
|
C:LEU109
|
3.4
|
13.0
|
1.0
|
C4
|
C:T3601
|
3.4
|
29.1
|
0.4
|
I2
|
C:T3601
|
3.5
|
35.1
|
0.4
|
CG
|
C:LEU17
|
3.6
|
12.6
|
1.0
|
CD1
|
C:LEU17
|
3.6
|
13.6
|
1.0
|
C2
|
C:T3601
|
3.6
|
28.0
|
0.4
|
CB
|
C:ALA108
|
3.7
|
12.5
|
1.0
|
C
|
C:ALA108
|
3.8
|
12.7
|
1.0
|
C6
|
C:T3601
|
3.9
|
31.6
|
0.4
|
O
|
C:HOH613
|
3.9
|
34.5
|
1.0
|
I2
|
C:T3601
|
3.9
|
35.7
|
0.4
|
N
|
C:LEU110
|
4.0
|
11.7
|
1.0
|
CA
|
C:ALA108
|
4.0
|
12.2
|
1.0
|
CA
|
C:LEU109
|
4.0
|
12.7
|
1.0
|
CB
|
C:LEU17
|
4.1
|
10.8
|
1.0
|
N
|
C:LEU17
|
4.2
|
10.1
|
1.0
|
C2
|
C:T3601
|
4.3
|
25.9
|
0.2
|
CA
|
C:LEU110
|
4.3
|
11.0
|
1.0
|
O2
|
C:T3601
|
4.3
|
28.9
|
0.4
|
C2
|
C:T3601
|
4.3
|
30.4
|
0.4
|
CB
|
C:LEU110
|
4.4
|
10.8
|
1.0
|
C
|
C:LYS15
|
4.4
|
11.8
|
1.0
|
C10
|
C:T3601
|
4.4
|
23.6
|
0.2
|
O
|
C:ALA108
|
4.6
|
13.0
|
1.0
|
CA
|
C:LEU17
|
4.8
|
10.6
|
1.0
|
C12
|
C:T3601
|
4.8
|
25.0
|
0.2
|
CA
|
C:ILE16
|
4.8
|
10.0
|
1.0
|
C
|
C:ILE16
|
4.9
|
10.2
|
1.0
|
CD1
|
C:LEU110
|
4.9
|
10.7
|
1.0
|
CD2
|
C:LEU17
|
4.9
|
13.9
|
1.0
|
O2
|
C:T3601
|
4.9
|
25.5
|
0.4
|
|
Iodine binding site 7 out
of 15 in 1sn5
Go back to
Iodine Binding Sites List in 1sn5
Iodine binding site 7 out
of 15 in the Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 7 of Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I601
b:21.0
occ:0.40
|
I3
|
C:T3601
|
0.0
|
21.0
|
0.4
|
I1
|
C:T3601
|
0.6
|
25.2
|
0.4
|
I3
|
C:T3601
|
0.7
|
38.1
|
0.2
|
C9
|
C:T3601
|
2.1
|
23.6
|
0.4
|
C9
|
C:T3601
|
2.3
|
35.5
|
0.2
|
C5
|
C:T3601
|
2.7
|
28.0
|
0.4
|
C7
|
C:T3601
|
3.1
|
23.5
|
0.4
|
C11
|
C:T3601
|
3.1
|
24.7
|
0.4
|
C7
|
C:T3601
|
3.2
|
33.6
|
0.2
|
O2
|
C:T3601
|
3.3
|
25.5
|
0.4
|
C11
|
C:T3601
|
3.3
|
36.6
|
0.2
|
O2
|
C:T3601
|
3.3
|
29.7
|
0.2
|
CG2
|
C:VAL121
|
3.6
|
20.7
|
1.0
|
C3
|
C:T3601
|
3.6
|
29.3
|
0.4
|
C7
|
C:T3601
|
3.7
|
28.0
|
0.4
|
O2
|
C:T3601
|
3.7
|
28.9
|
0.4
|
C2
|
C:T3601
|
3.7
|
28.0
|
0.4
|
C2
|
C:T3601
|
3.8
|
25.9
|
0.2
|
CG2
|
C:THR106
|
3.9
|
16.7
|
1.0
|
C12
|
C:T3601
|
3.9
|
28.1
|
0.4
|
C2
|
C:T3601
|
4.1
|
30.4
|
0.4
|
C4
|
C:T3601
|
4.1
|
23.7
|
0.2
|
CB
|
C:ALA108
|
4.2
|
12.5
|
1.0
|
CD1
|
A:LEU17
|
4.2
|
14.1
|
1.0
|
CD2
|
A:LEU17
|
4.4
|
14.4
|
1.0
|
C12
|
C:T3601
|
4.4
|
30.7
|
0.4
|
C1
|
C:T3601
|
4.4
|
26.6
|
0.4
|
C5
|
C:T3601
|
4.5
|
23.7
|
0.4
|
CB
|
C:THR106
|
4.5
|
16.9
|
1.0
|
CB
|
C:VAL121
|
4.5
|
20.5
|
1.0
|
C12
|
C:T3601
|
4.6
|
25.0
|
0.2
|
C1
|
C:T3601
|
4.6
|
37.3
|
0.2
|
C5
|
C:T3601
|
4.6
|
34.8
|
0.2
|
C4
|
C:T3601
|
4.6
|
29.1
|
0.4
|
C4
|
C:T3601
|
4.7
|
31.0
|
0.4
|
CE
|
A:LYS15
|
4.7
|
15.2
|
1.0
|
CB
|
C:LYS15
|
4.9
|
13.1
|
1.0
|
CG
|
A:LEU17
|
4.9
|
13.3
|
1.0
|
C1
|
C:T3601
|
4.9
|
30.1
|
0.4
|
C10
|
C:T3601
|
5.0
|
28.5
|
0.4
|
C3
|
C:T3601
|
5.0
|
24.6
|
0.4
|
|
Iodine binding site 8 out
of 15 in 1sn5
Go back to
Iodine Binding Sites List in 1sn5
Iodine binding site 8 out
of 15 in the Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 8 of Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I601
b:25.8
occ:0.40
|
I3
|
C:T3601
|
0.0
|
25.8
|
0.4
|
I1
|
C:T3601
|
0.6
|
34.2
|
0.2
|
I1
|
C:T3601
|
0.9
|
19.4
|
0.4
|
C9
|
C:T3601
|
2.1
|
28.1
|
0.4
|
C5
|
C:T3601
|
2.5
|
34.8
|
0.2
|
C5
|
C:T3601
|
2.7
|
23.7
|
0.4
|
C11
|
C:T3601
|
3.1
|
29.0
|
0.4
|
C7
|
C:T3601
|
3.1
|
28.0
|
0.4
|
O2
|
C:T3601
|
3.3
|
28.9
|
0.4
|
C3
|
C:T3601
|
3.3
|
36.1
|
0.2
|
C3
|
C:T3601
|
3.5
|
24.6
|
0.4
|
C7
|
C:T3601
|
3.6
|
33.6
|
0.2
|
CG2
|
A:VAL121
|
3.7
|
12.2
|
1.0
|
O
|
C:HOH662
|
3.7
|
37.4
|
1.0
|
C7
|
C:T3601
|
3.7
|
23.5
|
0.4
|
CD1
|
C:LEU17
|
3.8
|
13.6
|
1.0
|
O2
|
C:T3601
|
3.8
|
25.5
|
0.4
|
O2
|
C:T3601
|
3.8
|
29.7
|
0.2
|
C2
|
C:T3601
|
3.9
|
30.4
|
0.4
|
C2
|
C:T3601
|
4.0
|
28.0
|
0.4
|
C2
|
C:T3601
|
4.1
|
25.9
|
0.2
|
C12
|
C:T3601
|
4.2
|
30.7
|
0.4
|
CD2
|
C:LEU17
|
4.2
|
13.9
|
1.0
|
C4
|
C:T3601
|
4.3
|
23.7
|
0.2
|
C12
|
C:T3601
|
4.3
|
28.1
|
0.4
|
CG2
|
A:THR106
|
4.3
|
11.1
|
1.0
|
C1
|
C:T3601
|
4.4
|
30.1
|
0.4
|
CB
|
A:ALA108
|
4.5
|
11.1
|
1.0
|
C5
|
C:T3601
|
4.5
|
28.0
|
0.4
|
CG
|
C:LEU17
|
4.5
|
12.6
|
1.0
|
C4
|
C:T3601
|
4.6
|
29.1
|
0.4
|
CB
|
A:VAL121
|
4.6
|
11.9
|
1.0
|
C4
|
C:T3601
|
4.6
|
31.0
|
0.4
|
CE
|
C:LYS15
|
4.7
|
15.9
|
1.0
|
C1
|
C:T3601
|
4.7
|
37.3
|
0.2
|
CB
|
A:THR106
|
4.8
|
11.4
|
1.0
|
C1
|
C:T3601
|
4.9
|
26.6
|
0.4
|
C3
|
C:T3601
|
4.9
|
29.3
|
0.4
|
C12
|
C:T3601
|
4.9
|
25.0
|
0.2
|
C9
|
C:T3601
|
5.0
|
35.5
|
0.2
|
|
Iodine binding site 9 out
of 15 in 1sn5
Go back to
Iodine Binding Sites List in 1sn5
Iodine binding site 9 out
of 15 in the Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 9 of Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I601
b:38.1
occ:0.20
|
I3
|
C:T3601
|
0.0
|
38.1
|
0.2
|
I3
|
C:T3601
|
0.7
|
21.0
|
0.4
|
I1
|
C:T3601
|
0.8
|
25.2
|
0.4
|
C9
|
C:T3601
|
1.9
|
23.6
|
0.4
|
C9
|
C:T3601
|
2.1
|
35.5
|
0.2
|
C5
|
C:T3601
|
2.4
|
28.0
|
0.4
|
C11
|
C:T3601
|
2.8
|
24.7
|
0.4
|
C11
|
C:T3601
|
3.0
|
36.6
|
0.2
|
C7
|
C:T3601
|
3.0
|
23.5
|
0.4
|
C7
|
C:T3601
|
3.1
|
33.6
|
0.2
|
C3
|
C:T3601
|
3.2
|
29.3
|
0.4
|
O2
|
C:T3601
|
3.4
|
29.7
|
0.2
|
O2
|
C:T3601
|
3.4
|
25.5
|
0.4
|
C7
|
C:T3601
|
3.7
|
28.0
|
0.4
|
CG2
|
C:VAL121
|
3.7
|
20.7
|
1.0
|
O2
|
C:T3601
|
3.9
|
28.9
|
0.4
|
C2
|
C:T3601
|
4.0
|
25.9
|
0.2
|
C2
|
C:T3601
|
4.1
|
28.0
|
0.4
|
CE
|
A:LYS15
|
4.1
|
15.2
|
1.0
|
C1
|
C:T3601
|
4.1
|
26.6
|
0.4
|
CG2
|
C:THR106
|
4.2
|
16.7
|
1.0
|
CD2
|
A:LEU17
|
4.2
|
14.4
|
1.0
|
C2
|
C:T3601
|
4.3
|
30.4
|
0.4
|
C5
|
C:T3601
|
4.3
|
23.7
|
0.4
|
C1
|
C:T3601
|
4.3
|
37.3
|
0.2
|
C12
|
C:T3601
|
4.4
|
28.1
|
0.4
|
C12
|
C:T3601
|
4.5
|
30.7
|
0.4
|
CD1
|
A:LEU17
|
4.5
|
14.1
|
1.0
|
C5
|
C:T3601
|
4.5
|
34.8
|
0.2
|
C4
|
C:T3601
|
4.5
|
23.7
|
0.2
|
C1
|
C:T3601
|
4.5
|
30.1
|
0.4
|
CB
|
C:VAL121
|
4.5
|
20.5
|
1.0
|
CB
|
C:THR106
|
4.6
|
16.9
|
1.0
|
C3
|
C:T3601
|
4.8
|
24.6
|
0.4
|
C12
|
C:T3601
|
4.8
|
25.0
|
0.2
|
NZ
|
A:LYS15
|
4.8
|
13.9
|
1.0
|
CB
|
C:ALA108
|
4.9
|
12.5
|
1.0
|
C3
|
C:T3601
|
4.9
|
36.1
|
0.2
|
CG
|
A:LYS15
|
4.9
|
12.2
|
1.0
|
CG
|
A:LEU17
|
4.9
|
13.3
|
1.0
|
C4
|
C:T3601
|
5.0
|
29.1
|
0.4
|
C9
|
C:T3601
|
5.0
|
28.1
|
0.4
|
CG1
|
C:VAL121
|
5.0
|
21.4
|
1.0
|
|
Iodine binding site 10 out
of 15 in 1sn5
Go back to
Iodine Binding Sites List in 1sn5
Iodine binding site 10 out
of 15 in the Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 10 of Crystal Structure of Sea Bream Transthyretin in Complex with Triiodothyronine at 1.90A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:I602
b:20.4
occ:0.50
|
I1
|
D:T3602
|
0.0
|
20.4
|
0.5
|
I3
|
D:T3602
|
0.9
|
25.2
|
0.5
|
C9
|
D:T3602
|
1.4
|
26.0
|
0.5
|
C5
|
D:T3602
|
2.1
|
26.2
|
0.5
|
C11
|
D:T3602
|
2.4
|
26.9
|
0.5
|
C7
|
D:T3602
|
2.4
|
26.1
|
0.5
|
O2
|
D:T3602
|
2.9
|
28.0
|
0.5
|
C3
|
D:T3602
|
3.0
|
27.6
|
0.5
|
C7
|
D:T3602
|
3.1
|
26.7
|
0.5
|
O2
|
D:T3602
|
3.2
|
29.1
|
0.5
|
C2
|
D:T3602
|
3.3
|
30.1
|
0.5
|
C12
|
D:T3602
|
3.5
|
30.6
|
0.5
|
C1
|
D:T3602
|
3.6
|
27.2
|
0.5
|
C2
|
D:T3602
|
3.6
|
31.8
|
0.5
|
C5
|
D:T3602
|
3.7
|
25.4
|
0.5
|
CG2
|
D:THR106
|
4.0
|
15.8
|
1.0
|
C3
|
D:T3602
|
4.1
|
26.0
|
0.5
|
C12
|
D:T3602
|
4.1
|
32.6
|
0.5
|
C4
|
D:T3602
|
4.3
|
31.7
|
0.5
|
CB
|
D:ALA108
|
4.3
|
12.9
|
1.0
|
C1
|
D:T3602
|
4.3
|
29.7
|
0.5
|
CB
|
D:LYS15
|
4.3
|
11.8
|
1.0
|
C4
|
D:T3602
|
4.3
|
33.5
|
0.5
|
CD1
|
B:LEU17
|
4.4
|
13.4
|
1.0
|
C9
|
D:T3602
|
4.4
|
26.4
|
0.5
|
CG
|
D:LYS15
|
4.5
|
12.2
|
1.0
|
C10
|
D:T3602
|
4.6
|
31.0
|
0.5
|
CE
|
B:LYS15
|
4.7
|
15.6
|
1.0
|
CG2
|
D:VAL121
|
4.7
|
17.2
|
1.0
|
O
|
B:HOH225
|
4.8
|
31.6
|
1.0
|
C11
|
D:T3602
|
4.9
|
27.8
|
0.5
|
N1
|
D:T3602
|
5.0
|
33.0
|
0.5
|
C13
|
D:T3602
|
5.0
|
28.2
|
0.5
|
CD2
|
B:LEU17
|
5.0
|
11.3
|
1.0
|
|
Reference:
T.Eneqvist,
E.Lundberg,
A.Karlsson,
S.Huang,
C.R.Santos,
D.M.Power,
A.E.Sauer-Eriksson.
High Resolution Crystal Structures of Piscine Transthyretin Reveal Different Binding Modes For Triiodothyronine and Thyroxine. J.Biol.Chem. V. 279 26411 2004.
ISSN: ISSN 0021-9258
PubMed: 15082720
DOI: 10.1074/JBC.M313553200
Page generated: Sun Aug 11 12:48:00 2024
|