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Iodine in PDB 1tuk: Crystal Structure of Liganded Type 2 Non Specific Lipid Transfer Protein From Wheat

Protein crystallography data

The structure of Crystal Structure of Liganded Type 2 Non Specific Lipid Transfer Protein From Wheat, PDB code: 1tuk was solved by F.Hoh, J.L.Pons, M.F.Gautier, F.De Lamotte, C.Dumas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.90 / 1.12
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 61.465, 29.320, 41.550, 90.00, 127.65, 90.00
R / Rfree (%) 13.7 / 16.2

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Liganded Type 2 Non Specific Lipid Transfer Protein From Wheat (pdb code 1tuk). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Crystal Structure of Liganded Type 2 Non Specific Lipid Transfer Protein From Wheat, PDB code: 1tuk:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 1tuk

Go back to Iodine Binding Sites List in 1tuk
Iodine binding site 1 out of 2 in the Crystal Structure of Liganded Type 2 Non Specific Lipid Transfer Protein From Wheat


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Liganded Type 2 Non Specific Lipid Transfer Protein From Wheat within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I101

b:12.7
occ:0.50
NH1 A:ARG29 3.0 36.6 1.0
O A:HOH166 3.6 19.0 1.0
NE2 A:GLN32 3.7 9.1 1.0
CZ A:ARG29 4.1 31.3 1.0
CD2 A:LEU62 4.4 10.9 1.0
OE1 A:GLN32 4.4 9.9 1.0
CD A:GLN32 4.5 8.6 1.0
CG A:ARG29 4.7 13.6 1.0
NH2 A:ARG29 4.8 37.0 1.0
NE A:ARG29 4.8 27.1 1.0
CD A:ARG29 4.9 18.9 1.0

Iodine binding site 2 out of 2 in 1tuk

Go back to Iodine Binding Sites List in 1tuk
Iodine binding site 2 out of 2 in the Crystal Structure of Liganded Type 2 Non Specific Lipid Transfer Protein From Wheat


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Liganded Type 2 Non Specific Lipid Transfer Protein From Wheat within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I102

b:7.9
occ:0.90
O A:HOH126 3.6 21.9 1.0
N A:SER21 3.8 8.3 1.0
O A:VAL9 3.8 8.3 1.0
N A:ALA13 3.9 6.2 1.0
CA A:PRO20 4.0 8.1 1.0
CB A:ALA13 4.0 6.8 1.0
O A:HOH125 4.0 11.1 1.0
CA A:CYS10 4.1 6.3 1.0
CB A:CYS24 4.1 6.8 1.0
CB A:SER12 4.2 6.8 1.0
OG A:SER21 4.3 8.6 1.0
C A:CYS10 4.3 7.2 1.0
O A:LYS19 4.3 9.7 1.0
C A:PRO20 4.4 8.4 1.0
O A:CYS10 4.4 6.3 1.0
CB A:SER21 4.5 8.7 1.0
N A:SER12 4.5 6.4 1.0
SG A:CYS24 4.5 7.1 1.0
CA A:ALA13 4.5 5.5 1.0
CA A:SER12 4.7 6.1 1.0
CB A:PRO20 4.7 7.9 1.0
C A:VAL9 4.7 7.7 1.0
C A:SER12 4.7 6.4 1.0
CA A:SER21 4.7 8.6 1.0
N A:CYS10 4.8 7.2 1.0
OG A:SER12 4.8 7.0 1.0
N A:PRO20 4.9 8.0 1.0
O A:HOH173 5.0 20.5 0.5
N A:ALA11 5.0 6.0 1.0
C A:LYS19 5.0 9.1 1.0

Reference:

F.Hoh, J.L.Pons, M.F.Gautier, F.De Lamotte, C.Dumas. Structure of A Liganded Type 2 Non-Specific Lipid-Transfer Protein From Wheat and the Molecular Basis of Lipid Binding. Acta Crystallogr.,Sect.D V. 61 397 2005.
ISSN: ISSN 0907-4449
PubMed: 15805594
DOI: 10.1107/S0907444905000417
Page generated: Sun Dec 13 19:21:27 2020

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