Atomistry » Iodine » PDB 1v1g-2arl » 1vko
Atomistry »
  Iodine »
    PDB 1v1g-2arl »
      1vko »

Iodine in PDB 1vko: Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution

Enzymatic activity of Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution

All present enzymatic activity of Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution:
5.5.1.4;

Protein crystallography data

The structure of Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution, PDB code: 1vko was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.41 / 2.30
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 76.980, 129.980, 131.320, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 26.5

Other elements in 1vko:

The structure of Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution also contains other interesting chemical elements:

Potassium (K) 1 atom
Chlorine (Cl) 2 atoms

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution (pdb code 1vko). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution, PDB code: 1vko:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 1vko

Go back to Iodine Binding Sites List in 1vko
Iodine binding site 1 out of 2 in the Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I529

b:37.2
occ:0.55
 OG A:SER120 3.3 41.5 1.0
CD2 A:TYR118 4.0 37.0 1.0
CB A:SER120 4.4 36.2 1.0
CG A:GLU512 4.5 44.6 1.0
CE2 A:TYR118 4.6 39.0 1.0
CB A:GLU512 4.6 37.7 1.0
O A:TYR118 4.6 27.6 1.0
OE2 A:GLU512 4.7 29.9 1.0
N A:SER120 4.9 32.0 1.0

Iodine binding site 2 out of 2 in 1vko

Go back to Iodine Binding Sites List in 1vko
Iodine binding site 2 out of 2 in the Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I530

b:39.8
occ:0.50
 N A:ASP382 3.5 52.6 1.0
CA A:PHE380 3.7 46.2 1.0
N A:LYS384 3.7 56.8 1.0
C A:PHE380 3.8 46.5 1.0
N A:PRO381 3.8 47.5 1.0
CD A:PRO381 3.8 48.2 1.0
CB A:ASP382 3.9 55.9 1.0
N A:ALA383 3.9 55.6 1.0
CA A:ASP382 4.0 55.0 1.0
CB A:LYS384 4.0 56.4 1.0
C A:ASP382 4.1 55.3 1.0
CB A:PHE380 4.1 44.5 1.0
O A:LYS384 4.2 53.8 1.0
OD2 A:ASP382 4.2 67.4 1.0
CD1 A:PHE380 4.3 44.4 1.0
O A:PHE380 4.4 43.9 1.0
CA A:LYS384 4.4 56.1 1.0
CG A:ASP382 4.4 64.1 1.0
CG A:PRO381 4.4 50.0 1.0
CG A:LYS384 4.5 62.7 1.0
CD A:LYS384 4.5 72.0 1.0
C A:PRO381 4.5 51.2 1.0
CE A:LYS334 4.6 47.2 1.0
CA A:ALA383 4.7 56.7 1.0
C A:ALA383 4.7 56.6 1.0
CA A:PRO381 4.7 49.4 1.0
CG A:PHE380 4.7 49.7 1.0
C A:LYS384 4.8 54.2 1.0
O A:LEU379 4.8 43.0 1.0
O A:ASP382 4.8 54.7 1.0
NZ A:LYS334 4.9 57.6 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sun Aug 11 12:59:10 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy