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Iodine in PDB 1vko: Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution

Enzymatic activity of Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution

All present enzymatic activity of Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution:
5.5.1.4;

Protein crystallography data

The structure of Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution, PDB code: 1vko was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.41 / 2.30
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 76.980, 129.980, 131.320, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 26.5

Other elements in 1vko:

The structure of Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution also contains other interesting chemical elements:

Potassium (K) 1 atom
Chlorine (Cl) 2 atoms

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution (pdb code 1vko). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution, PDB code: 1vko:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 1vko

Go back to Iodine Binding Sites List in 1vko
Iodine binding site 1 out of 2 in the Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I529

b:37.2
occ:0.55
 OG A:SER120 3.3 41.5 1.0
CD2 A:TYR118 4.0 37.0 1.0
CB A:SER120 4.4 36.2 1.0
CG A:GLU512 4.5 44.6 1.0
CE2 A:TYR118 4.6 39.0 1.0
CB A:GLU512 4.6 37.7 1.0
O A:TYR118 4.6 27.6 1.0
OE2 A:GLU512 4.7 29.9 1.0
N A:SER120 4.9 32.0 1.0

Iodine binding site 2 out of 2 in 1vko

Go back to Iodine Binding Sites List in 1vko
Iodine binding site 2 out of 2 in the Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Inositol-3-Phosphate Synthase (CE21227) From Caenorhabditis Elegans at 2.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I530

b:39.8
occ:0.50
 N A:ASP382 3.5 52.6 1.0
CA A:PHE380 3.7 46.2 1.0
N A:LYS384 3.7 56.8 1.0
C A:PHE380 3.8 46.5 1.0
N A:PRO381 3.8 47.5 1.0
CD A:PRO381 3.8 48.2 1.0
CB A:ASP382 3.9 55.9 1.0
N A:ALA383 3.9 55.6 1.0
CA A:ASP382 4.0 55.0 1.0
CB A:LYS384 4.0 56.4 1.0
C A:ASP382 4.1 55.3 1.0
CB A:PHE380 4.1 44.5 1.0
O A:LYS384 4.2 53.8 1.0
OD2 A:ASP382 4.2 67.4 1.0
CD1 A:PHE380 4.3 44.4 1.0
O A:PHE380 4.4 43.9 1.0
CA A:LYS384 4.4 56.1 1.0
CG A:ASP382 4.4 64.1 1.0
CG A:PRO381 4.4 50.0 1.0
CG A:LYS384 4.5 62.7 1.0
CD A:LYS384 4.5 72.0 1.0
C A:PRO381 4.5 51.2 1.0
CE A:LYS334 4.6 47.2 1.0
CA A:ALA383 4.7 56.7 1.0
C A:ALA383 4.7 56.6 1.0
CA A:PRO381 4.7 49.4 1.0
CG A:PHE380 4.7 49.7 1.0
C A:LYS384 4.8 54.2 1.0
O A:LEU379 4.8 43.0 1.0
O A:ASP382 4.8 54.7 1.0
NZ A:LYS334 4.9 57.6 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sun Aug 11 12:59:10 2024

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