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Iodine in PDB 1xbu: Streptomyces Griseus Aminopeptidase Complexed with P-Iodo-D- Phenylalanine

Protein crystallography data

The structure of Streptomyces Griseus Aminopeptidase Complexed with P-Iodo-D- Phenylalanine, PDB code: 1xbu was solved by V.Reiland, R.Gilboa, A.Spungin-Bialik, D.Schomburg, Y.Shoham, S.Blumberg, G.Shoham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.20
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 60.970, 60.970, 144.519, 90.00, 90.00, 90.00
R / Rfree (%) 12.3 / 16.3

Other elements in 1xbu:

The structure of Streptomyces Griseus Aminopeptidase Complexed with P-Iodo-D- Phenylalanine also contains other interesting chemical elements:

Calcium (Ca) 1 atom
Zinc (Zn) 2 atoms

Iodine Binding Sites:

The binding sites of Iodine atom in the Streptomyces Griseus Aminopeptidase Complexed with P-Iodo-D- Phenylalanine (pdb code 1xbu). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Streptomyces Griseus Aminopeptidase Complexed with P-Iodo-D- Phenylalanine, PDB code: 1xbu:

Iodine binding site 1 out of 1 in 1xbu

Go back to Iodine Binding Sites List in 1xbu
Iodine binding site 1 out of 1 in the Streptomyces Griseus Aminopeptidase Complexed with P-Iodo-D- Phenylalanine


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Streptomyces Griseus Aminopeptidase Complexed with P-Iodo-D- Phenylalanine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I913

b:18.6
occ:0.41
I1 A:IOY913 0.0 18.6 0.4
CZ A:IOY913 2.0 15.7 0.4
CE1 A:IOY913 3.0 14.4 0.4
CE2 A:IOY913 3.0 17.1 0.4
OH A:TYR172 3.5 9.5 1.0
N A:GLY201 3.7 40.0 1.0
CD A:GLU196 3.8 20.5 1.0
CZ A:TYR172 3.8 8.7 1.0
CE1 A:TYR172 3.9 9.1 1.0
OE1 A:GLU196 3.9 21.9 1.0
OE2 A:GLU196 4.0 28.6 1.0
O A:HOH1004 4.0 10.5 1.0
CE1 A:HIS205 4.2 11.5 1.0
CD1 A:IOY913 4.2 15.0 0.4
CB A:SER203 4.2 8.8 1.0
CG A:GLU196 4.3 18.9 1.0
CD2 A:IOY913 4.3 17.6 0.4
CA A:GLY201 4.5 36.4 1.0
O A:HOH1432 4.6 42.6 1.0
CG A:PHE219 4.6 7.9 1.0
CE2 A:TYR172 4.7 8.8 1.0
C A:GLY201 4.7 33.4 1.0
CD1 A:PHE219 4.8 8.4 1.0
CD1 A:TYR172 4.8 9.3 1.0
CG A:IOY913 4.8 16.8 0.4
CB A:PHE219 4.8 8.1 1.0
NE2 A:HIS205 4.9 11.5 1.0
CD2 A:PHE219 4.9 9.8 1.0
N A:ARG202 4.9 30.3 1.0

Reference:

V.Reiland, R.Gilboa, A.Spungin-Bialik, D.Schomburg, Y.Shoham, S.Blumberg, G.Shoham. Streptomyces Griseus Aminopeptidase Complexed with P-Iodo-D-Phenylalanine To Be Published.
Page generated: Sun Dec 13 19:22:19 2020

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