Iodine in PDB 1zvv: Crystal Structure of A Ccpa-Crh-Dna Complex

The structure of Crystal Structure of A Ccpa-Crh-Dna Complex, PDB code: 1zvv was solved by M.A.Schumacher, R.G.Brennan, W.Hillen, G.Seidel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	79.05 / 2.98
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	83.690, 158.100, 125.470, 90.00, 100.73, 90.00
R / Rfree (%)	23.5 / 29.8

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Iodine atom in the Crystal Structure of A Ccpa-Crh-Dna Complex (pdb code 1zvv). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 11 binding sites of Iodine where determined in the Crystal Structure of A Ccpa-Crh-Dna Complex, PDB code: 1zvv:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 11 in the Crystal Structure of A Ccpa-Crh-Dna Complex


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of A Ccpa-Crh-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ O:I415 b:0.6 occ:0.48 O O:HOH36 3.9 1.0 0.5 N4 O:DC709 4.5 39.3 1.0

Iodine binding site 2 out of 11 in the Crystal Structure of A Ccpa-Crh-Dna Complex


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of A Ccpa-Crh-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:I410 b:77.3 occ:0.48 O A:ASP103 3.2 74.7 1.0 OD1 A:ASP103 3.6 84.3 1.0 CA A:LYS104 3.8 61.5 1.0 C A:ASP103 4.0 70.5 1.0 CB A:HIS107 4.1 48.0 1.0 CG A:HIS107 4.1 48.4 1.0 CG A:LYS104 4.2 67.2 1.0 N A:LYS104 4.2 65.4 1.0 CD2 A:HIS107 4.3 54.3 1.0 CB A:LYS104 4.4 62.1 1.0 CG A:ASP103 4.6 85.2 1.0 ND1 A:HIS107 4.7 52.2 1.0 CD A:LYS104 4.8 73.2 1.0 C A:LYS104 4.9 61.3 1.0 NE2 A:HIS107 5.0 55.8 1.0 O A:LYS104 5.0 59.8 1.0

Iodine binding site 3 out of 11 in the Crystal Structure of A Ccpa-Crh-Dna Complex


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of A Ccpa-Crh-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:I411 b:0.9 occ:0.48 CB A:GLN100 3.7 53.8 1.0 C A:ASP99 4.1 50.7 1.0 CB A:ASP69 4.1 39.4 1.0 O A:ASP99 4.2 48.1 1.0 N A:GLN100 4.4 54.2 1.0 CG A:GLN100 4.5 53.7 1.0 CA A:ASP99 4.5 51.6 1.0 CB A:PRO68 4.6 38.1 1.0 O A:PRO68 4.6 41.8 1.0 C A:PRO68 4.6 38.5 1.0 CA A:GLN100 4.7 55.4 1.0 CD A:GLN100 4.8 52.8 1.0 NE2 A:GLN100 4.9 51.9 1.0 N A:ASP69 4.9 36.9 1.0

Iodine binding site 4 out of 11 in the Crystal Structure of A Ccpa-Crh-Dna Complex


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of A Ccpa-Crh-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:I412 b:95.5 occ:0.48 CD A:PRO155 3.7 45.1 1.0 CG2 A:ILE154 3.8 60.2 1.0 N A:VAL142 4.3 40.2 1.0 O A:VAL142 4.3 46.0 1.0 CG A:PRO155 4.4 47.6 1.0 CB A:VAL142 4.4 38.9 1.0 CA A:ILE154 4.7 58.4 1.0 O A:GLN153 4.7 68.8 1.0 CA A:VAL142 4.8 41.5 1.0 CB A:ILE154 4.8 60.8 1.0 C A:VAL142 4.9 42.4 1.0 N A:PRO155 5.0 46.3 1.0

Iodine binding site 5 out of 11 in the Crystal Structure of A Ccpa-Crh-Dna Complex


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of A Ccpa-Crh-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:I413 b:66.3 occ:0.48 CD A:LYS115 4.2 33.7 1.0 O A:LYS115 4.6 38.1 1.0 CG A:LYS115 4.8 33.3 1.0

Iodine binding site 6 out of 11 in the Crystal Structure of A Ccpa-Crh-Dna Complex


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of A Ccpa-Crh-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:I422 b:0.5 occ:0.48 O B:LEU187 3.5 65.9 1.0 C B:LEU187 3.9 66.8 1.0 CA B:GLU188 3.9 75.5 1.0 N B:GLU188 4.1 70.5 1.0 CB B:LEU187 4.4 69.9 1.0 CG B:HIS193 4.4 78.0 1.0 CB B:HIS193 4.5 75.0 1.0 CB B:GLU188 4.6 81.9 1.0 CD2 B:HIS193 4.7 77.1 1.0 CA B:LEU187 4.8 65.1 1.0 C B:GLU188 4.8 77.0 1.0 ND1 B:HIS193 4.8 76.5 1.0 O B:GLU188 4.9 81.2 1.0

Iodine binding site 7 out of 11 in the Crystal Structure of A Ccpa-Crh-Dna Complex


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of A Ccpa-Crh-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:I419 b:0.9 occ:0.48 N B:VAL142 4.0 41.5 1.0 CB B:VAL142 4.0 33.7 1.0 O B:VAL142 4.0 36.7 1.0 CG2 B:VAL142 4.3 37.0 1.0 CD1 B:ILE154 4.3 47.9 1.0 O B:LEU135 4.4 77.9 1.0 CA B:VAL142 4.5 37.5 1.0 CD B:PRO155 4.5 46.0 1.0 C B:VAL142 4.7 37.3 1.0 O B:VAL140 4.8 52.2 1.0 CA B:LYS136 4.9 80.7 1.0 C B:PRO141 4.9 44.9 1.0 O B:LYS136 5.0 82.4 1.0 CA B:PRO141 5.0 48.1 1.0

Iodine binding site 8 out of 11 in the Crystal Structure of A Ccpa-Crh-Dna Complex


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of A Ccpa-Crh-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:I420 b:0.9 occ:0.48 CB B:PRO190 4.0 65.4 1.0 CD1 B:ILE148 4.1 66.1 1.0 N B:SER150 4.1 68.8 1.0 CB B:ILE148 4.3 65.8 1.0 CB B:ALA194 4.5 67.5 1.0 CG1 B:ILE148 4.6 62.4 1.0 CA B:SER150 4.6 71.1 1.0 CB B:SER150 4.7 71.8 1.0 N B:GLU149 4.7 63.6 1.0 C B:ILE148 4.8 63.6 1.0 C B:GLU149 4.8 66.6 1.0 CA B:GLU149 4.8 65.4 1.0 CG B:PRO190 4.8 65.0 1.0 NZ B:LYS195 4.9 74.2 1.0 O B:ILE148 4.9 63.5 1.0

Iodine binding site 9 out of 11 in the Crystal Structure of A Ccpa-Crh-Dna Complex


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Crystal Structure of A Ccpa-Crh-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ P:I421 b:99.2 occ:0.48 CG P:GLN24 3.4 73.6 1.0 CE B:MET88 3.9 45.5 1.0 NE2 P:GLN24 4.3 79.4 1.0 CA P:GLN24 4.3 58.0 1.0 CD P:GLN24 4.3 78.4 1.0 CG B:MET88 4.4 49.7 1.0 CB P:ASN27 4.4 54.6 1.0 ND2 P:ASN27 4.4 56.1 1.0 CB P:GLN24 4.4 65.7 1.0 O P:GLN24 4.6 54.3 1.0 SD B:MET88 4.6 43.9 1.0 CG P:ASN27 4.6 55.7 1.0 C P:GLN24 4.9 58.2 1.0

Iodine binding site 10 out of 11 in the Crystal Structure of A Ccpa-Crh-Dna Complex


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Crystal Structure of A Ccpa-Crh-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:I414 b:45.5 occ:0.48 N G:VAL142 3.8 34.5 1.0 O G:VAL142 4.1 37.5 1.0 CB G:VAL142 4.1 36.4 1.0 O G:LEU135 4.2 50.8 1.0 CA G:LYS136 4.2 56.2 1.0 O G:HOH421 4.3 1.0 0.5 CA G:VAL142 4.4 35.9 1.0 CD G:PRO155 4.5 12.1 1.0 O G:LYS136 4.6 55.4 1.0 C G:VAL142 4.6 38.1 1.0 O G:VAL140 4.7 38.5 1.0 CG G:LYS136 4.8 62.0 1.0 C G:LEU135 4.8 53.0 1.0 C G:PRO141 4.8 38.1 1.0 N G:LYS136 4.8 54.1 1.0 CG2 G:VAL142 4.8 33.6 1.0 CG1 G:ILE154 4.8 32.5 1.0 CA G:PRO141 4.9 36.4 1.0 C G:LYS136 4.9 52.7 1.0 CG2 G:ILE154 5.0 24.8 1.0 OG G:SER138 5.0 50.5 1.0

M.A.Schumacher, G.Seidel, W.Hillen, R.G.Brennan. Phosphoprotein Crh-SER46-P Displays Altered Binding to Ccpa to Effect Carbon Catabolite Regulation. J.Biol.Chem. V. 281 6793 2006.
ISSN: ISSN 0021-9258
PubMed: 16316990
DOI: 10.1074/JBC.M509977200