Atomistry » Iodine » PDB 1v1g-2arl » 2a0n
Atomistry »
  Iodine »
    PDB 1v1g-2arl »
      2a0n »

Iodine in PDB 2a0n: Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution

Protein crystallography data

The structure of Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution, PDB code: 2a0n was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.31 / 1.64
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 96.610, 96.610, 155.828, 90.00, 90.00, 120.00
R / Rfree (%) 16.7 / 19.2

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution (pdb code 2a0n). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 9 binding sites of Iodine where determined in the Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution, PDB code: 2a0n:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Iodine binding site 1 out of 9 in 2a0n

Go back to Iodine Binding Sites List in 2a0n
Iodine binding site 1 out of 9 in the Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I254

b:17.2
occ:0.50
 O1 A:PO4261 3.2 39.4 0.8
OG A:SER101 3.3 17.1 0.5
OG A:SER101 3.5 27.2 0.5
O A:HOH401 3.5 16.5 1.0
N A:GLY81 3.9 19.7 1.0
CB A:SER101 4.0 18.8 0.5
CB A:SER101 4.0 19.7 0.5
O A:SER101 4.1 19.1 1.0
CB A:ASN103 4.1 17.9 1.0
O3 A:PO4261 4.1 41.2 0.8
CB A:ALA128 4.1 18.6 1.0
C A:SER101 4.2 18.9 1.0
P A:PO4261 4.4 14.6 0.8
CD2 A:LEU50 4.4 24.4 1.0
O A:HOH558 4.4 37.6 1.0
CA A:GLY81 4.5 22.0 1.0
N A:ILE102 4.6 18.1 1.0
C A:ILE102 4.6 16.8 1.0
N A:ASN103 4.7 16.1 1.0
CA A:GLY80 4.7 19.6 1.0
C A:GLY80 4.7 19.7 1.0
CA A:ILE102 4.7 17.7 1.0
CA A:SER101 4.8 17.3 1.0
O2 A:PO4261 4.8 24.9 0.8
O A:ILE102 4.9 17.3 1.0

Iodine binding site 2 out of 9 in 2a0n

Go back to Iodine Binding Sites List in 2a0n
Iodine binding site 2 out of 9 in the Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I255

b:25.7
occ:0.50
 NH1 A:ARG163 3.4 25.0 1.0
O A:HOH528 3.5 24.1 1.0
NH2 A:ARG163 4.0 21.4 1.0
CZ A:ARG163 4.2 17.6 1.0
CB A:SER111 4.2 18.7 1.0
OG A:SER111 4.9 17.8 1.0

Iodine binding site 3 out of 9 in 2a0n

Go back to Iodine Binding Sites List in 2a0n
Iodine binding site 3 out of 9 in the Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I256

b:24.1
occ:0.75
 O A:HOH343 3.4 24.0 1.0
O A:HOH549 3.9 41.7 1.0
CB A:PHE214 4.0 14.3 1.0
O A:PHE214 4.1 17.2 1.0
C A:PHE214 4.1 15.5 1.0
CG2 A:VAL246 4.3 19.6 1.0
CE A:LYS4 4.3 28.2 1.0
N A:LEU215 4.4 15.6 1.0
CD2 A:LEU215 4.4 18.1 1.0
O A:HOH455 4.5 32.9 1.0
CG1 A:VAL246 4.5 17.4 1.0
CA A:VAL246 4.6 17.3 1.0
CB A:VAL246 4.7 18.8 1.0
CA A:PHE214 4.7 16.4 1.0
CA A:LEU215 4.7 16.0 1.0
NZ A:LYS4 4.8 26.3 1.0

Iodine binding site 4 out of 9 in 2a0n

Go back to Iodine Binding Sites List in 2a0n
Iodine binding site 4 out of 9 in the Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I257

b:26.1
occ:0.35
 I A:IOD257 0.0 26.1 0.3
I A:IOD257 1.2 28.4 0.3
O A:HOH577 3.8 43.3 1.0
CA A:GLY43 3.9 22.6 1.0
CD A:LYS238 4.0 21.1 1.0
N A:GLU251 4.0 35.6 1.0
NZ A:LYS238 4.0 18.9 1.0
O A:ARG249 4.1 24.4 1.0
CD1 A:LEU250 4.1 42.5 1.0
NH1 A:ARG235 4.1 45.4 1.0
CA A:LEU250 4.2 31.8 1.0
CD A:ARG235 4.3 39.6 1.0
O A:GLY43 4.4 21.3 1.0
C A:LEU250 4.6 34.5 1.0
CE A:LYS238 4.6 22.0 1.0
C A:GLY43 4.7 22.4 1.0
CB A:GLU251 4.8 39.8 1.0
O A:ILE42 4.8 28.3 1.0
CZ A:ARG235 4.8 48.5 1.0
N A:GLY43 4.9 21.1 1.0
NE A:ARG235 4.9 43.8 1.0
CA A:GLU251 4.9 39.6 1.0
NH1 A:ARG249 4.9 33.8 1.0
C A:ARG249 5.0 22.8 1.0
CG A:LEU250 5.0 39.0 1.0
NH2 A:ARG249 5.0 29.6 1.0

Iodine binding site 5 out of 9 in 2a0n

Go back to Iodine Binding Sites List in 2a0n
Iodine binding site 5 out of 9 in the Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I257

b:28.4
occ:0.35
 I A:IOD257 0.0 28.4 0.3
I A:IOD257 1.2 26.1 0.3
O A:HOH577 3.0 43.3 1.0
N A:GLU251 3.6 35.6 1.0
NH1 A:ARG249 3.8 33.8 1.0
O A:ARG249 3.8 24.4 1.0
NZ A:LYS238 3.8 18.9 1.0
CA A:GLY43 4.0 22.6 1.0
CZ A:ARG249 4.1 34.3 1.0
NH2 A:ARG249 4.1 29.6 1.0
CB A:GLU251 4.1 39.8 1.0
CA A:LEU250 4.2 31.8 1.0
O A:GLY43 4.4 21.3 1.0
C A:LEU250 4.4 34.5 1.0
CA A:GLU251 4.5 39.6 1.0
CD A:LYS238 4.5 21.1 1.0
C A:ARG249 4.6 22.8 1.0
C A:GLY43 4.7 22.4 1.0
N A:LEU250 4.7 28.5 1.0
CE A:LYS238 4.8 22.0 1.0
NH1 A:ARG235 4.8 45.4 1.0
CD1 A:LEU250 4.9 42.5 1.0
NE A:ARG249 5.0 28.5 1.0

Iodine binding site 6 out of 9 in 2a0n

Go back to Iodine Binding Sites List in 2a0n
Iodine binding site 6 out of 9 in the Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I258

b:20.7
occ:0.25
 I A:IOD258 0.0 20.7 0.2
I A:IOD258 1.0 22.6 0.2
O A:HOH573 3.2 40.4 1.0
O A:HOH507 3.5 43.4 1.0
CA A:GLU34 3.7 23.1 1.0
CB A:GLU34 3.7 22.9 1.0
N A:GLU34 3.9 23.0 1.0
CG A:GLU34 4.0 26.8 1.0
CG1 A:VAL33 4.2 22.2 1.0
CD A:GLN72 4.4 33.7 1.0
OE1 A:GLN72 4.4 29.2 1.0
C A:VAL33 4.4 22.1 1.0
CG A:GLN72 4.5 26.3 1.0
OD2 A:ASP31 4.5 30.3 1.0
CD A:LYS37 4.6 35.3 1.0
O A:VAL33 4.7 24.5 1.0
O A:HOH453 4.8 33.8 1.0
CB A:VAL33 4.8 22.4 1.0
NE2 A:GLN72 4.9 30.1 1.0
CD A:GLU34 5.0 27.8 1.0

Iodine binding site 7 out of 9 in 2a0n

Go back to Iodine Binding Sites List in 2a0n
Iodine binding site 7 out of 9 in the Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I258

b:22.6
occ:0.25
 I A:IOD258 0.0 22.6 0.2
I A:IOD258 1.0 20.7 0.2
OE1 A:GLN72 3.5 29.2 1.0
CD A:GLN72 3.6 33.7 1.0
CG A:GLN72 3.9 26.3 1.0
O A:HOH573 3.9 40.4 1.0
CD A:LYS37 4.0 35.3 1.0
NE2 A:GLN72 4.1 30.1 1.0
O A:HOH507 4.2 43.4 1.0
CA A:GLU34 4.2 23.1 1.0
CG1 A:VAL33 4.4 22.2 1.0
NZ A:LYS37 4.4 42.0 1.0
CB A:GLU34 4.5 22.9 1.0
N A:GLU34 4.5 23.0 1.0
CG A:GLU34 4.6 26.8 1.0
CB A:GLN72 4.7 23.8 1.0
CE A:LYS37 4.8 39.7 1.0
CB A:LYS37 4.8 21.9 1.0
C A:VAL33 4.9 22.1 1.0
O A:VAL33 4.9 24.5 1.0

Iodine binding site 8 out of 9 in 2a0n

Go back to Iodine Binding Sites List in 2a0n
Iodine binding site 8 out of 9 in the Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I259

b:20.5
occ:0.25
 O A:HOH412 2.6 42.6 1.0
O A:HOH458 3.0 36.7 1.0
O A:HOH377 3.0 34.8 1.0
O A:ASP155 3.8 19.7 1.0
C A:ASP155 3.9 18.5 1.0
CB A:GLU159 4.0 18.9 1.0
CB A:ASP155 4.0 18.3 1.0
CA A:TRP156 4.1 17.9 1.0
CE3 A:TRP156 4.1 19.1 1.0
N A:TRP156 4.1 17.3 1.0
CG2 A:ILE151 4.1 19.9 1.0
CG A:GLU159 4.4 18.6 1.0
O A:HOH321 4.4 18.9 1.0
CA A:ASP155 4.6 17.3 1.0
CB A:TRP156 4.7 18.4 1.0
CZ3 A:TRP156 4.9 21.4 1.0
OE1 A:GLU159 5.0 23.2 1.0

Iodine binding site 9 out of 9 in 2a0n

Go back to Iodine Binding Sites List in 2a0n
Iodine binding site 9 out of 9 in the Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Crystal Structure of Imidazole Glycerol Phosphate Synthase Subunit Hisf (Ec 4.1.3.-) (TM1036) From Thermotoga Maritima at 1.64 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I260

b:27.0
occ:0.25
 O A:HOH327 3.6 27.9 1.0
O A:HOH425 3.6 30.5 1.0
CB A:ASP45 4.0 16.7 1.0
OD1 A:ASP45 4.0 19.1 1.0
CG A:ASP45 4.0 18.2 1.0
CG A:ARG5 4.1 17.7 1.0
NE A:ARG249 4.1 28.5 1.0
CD A:ARG249 4.2 32.4 1.0
O A:HOH566 4.2 53.4 1.0
CD A:ARG5 4.5 23.5 1.0
CB A:ARG249 4.6 22.9 1.0
OD2 A:ASP45 4.6 16.9 1.0
CA A:ASP45 4.9 17.4 1.0
O A:HOH423 4.9 25.2 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sun Jan 24 17:23:06 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy