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Iodine in PDB 2b5j: Crystal Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Janssen-R165481

Enzymatic activity of Crystal Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Janssen-R165481

All present enzymatic activity of Crystal Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Janssen-R165481:
2.7.7.49;

Protein crystallography data

The structure of Crystal Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Janssen-R165481, PDB code: 2b5j was solved by D.H.Himmel, K.Das, A.D.Clark Jr., S.H.Hughes, A.Benjahad, S.Oumouch, J.Guillemont, S.Coupa, A.Poncelet, I.Csoka, C.Meyer, K.Andries, C.H.Mguyen, D.S.Grierson, E.Arnold, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.92 / 2.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 224.590, 69.300, 105.020, 90.00, 106.47, 90.00
R / Rfree (%) 24.8 / 30.4

Other elements in 2b5j:

The structure of Crystal Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Janssen-R165481 also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Janssen-R165481 (pdb code 2b5j). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Crystal Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Janssen-R165481, PDB code: 2b5j:

Iodine binding site 1 out of 1 in 2b5j

Go back to Iodine Binding Sites List in 2b5j
Iodine binding site 1 out of 1 in the Crystal Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Janssen-R165481


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Janssen-R165481 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I562

b:99.9
occ:1.00
 I12 A:3AC562 0.0 99.9 1.0
C12 A:3AC562 2.0 82.1 1.0
C13 A:3AC562 3.0 81.6 1.0
C11 A:3AC562 3.0 81.4 1.0
O13 A:3AC562 3.1 78.1 1.0
O11 A:3AC562 3.2 84.5 1.0
O A:TYR188 3.6 77.4 1.0
N A:GLY190 3.6 85.9 1.0
CA A:GLY190 3.7 90.5 1.0
C A:VAL189 3.8 81.3 1.0
C A:TYR188 3.9 75.8 1.0
CG1 A:VAL106 3.9 88.3 1.0
C21 A:3AC562 3.9 91.5 1.0
O A:VAL189 4.1 77.9 1.0
CB A:TYR188 4.1 78.7 1.0
CD1 A:TYR181 4.2 75.0 1.0
N14 A:3AC562 4.2 77.8 1.0
N A:VAL189 4.3 77.0 1.0
C16 A:3AC562 4.4 78.6 1.0
CG2 A:VAL106 4.4 87.0 1.0
CE1 A:TYR181 4.4 77.2 1.0
CA A:VAL189 4.5 79.1 1.0
C22 A:3AC562 4.5 93.6 1.0
CA A:TYR188 4.6 76.0 1.0
C26 A:3AC562 4.7 95.1 1.0
CB A:VAL106 4.8 90.9 1.0
C15 A:3AC562 4.8 76.7 1.0

Reference:

D.M.Himmel, K.Das, A.D.Clark Jr., S.H.Hughes, A.Benjahad, S.Oumouch, J.Guillemont, S.Coupa, A.Poncelet, I.Csoka, C.Meyer, K.Andries, C.H.Nguyen, D.S.Grierson, E.Arnold. Crystal Structures For Hiv-1 Reverse Transcriptase in Complexes with Three Pyridinone Derivatives: A New Class of Non-Nucleoside Inhibitors Effective Against A Broad Range of Drug-Resistant Strains. J.Med.Chem. V. 48 7582 2005.
ISSN: ISSN 0022-2623
PubMed: 16302798
DOI: 10.1021/JM0500323
Page generated: Sun Dec 13 19:23:15 2020

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