Iodine in PDB 2d91: Structure of Hyper-Vil-Lysozyme

All present enzymatic activity of Structure of Hyper-Vil-Lysozyme:
3.2.1.17;

The structure of Structure of Hyper-Vil-Lysozyme, PDB code: 2d91 was solved by H.Miyatake, T.Hasegawa, A.Yamano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.92 / 2.10
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.692, 79.692, 36.118, 90.00, 90.00, 90.00
R / Rfree (%)	25.2 / 29

The binding sites of Iodine atom in the Structure of Hyper-Vil-Lysozyme (pdb code 2d91). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Structure of Hyper-Vil-Lysozyme, PDB code: 2d91:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in the Structure of Hyper-Vil-Lysozyme


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structure of Hyper-Vil-Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:I200 b:49.2 occ:0.82 O A:ARG128 3.2 52.8 1.0 I A:IOD201 3.5 31.6 0.5 CB A:ALA10 3.7 37.2 1.0 CA A:ALA10 3.9 37.3 1.0 CD A:LYS13 4.1 45.4 1.0 CA A:LEU129 4.2 52.9 1.0 CD1 A:LEU129 4.3 52.6 1.0 C A:ARG128 4.3 51.9 1.0 CG A:LEU129 4.4 52.5 1.0 O A:ALA10 4.5 37.6 1.0 C A:ALA10 4.6 37.1 1.0 N A:LEU129 4.8 52.3 1.0 CB A:LYS13 4.8 42.4 1.0 CB A:LEU129 4.8 52.5 1.0 CG A:LYS13 4.8 44.5 1.0 NZ A:LYS13 4.9 44.9 1.0 CE A:LYS13 4.9 45.7 1.0 N A:ALA10 5.0 37.6 1.0

Iodine binding site 2 out of 2 in the Structure of Hyper-Vil-Lysozyme


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Structure of Hyper-Vil-Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:I201 b:31.6 occ:0.50 I A:IOD200 3.5 49.2 0.8 CB A:ARG14 3.9 45.0 1.0 CA A:ARG14 3.9 44.6 1.0 N A:ARG14 4.1 44.3 1.0 CG A:LYS13 4.4 44.5 1.0 CD A:LYS13 4.6 45.4 1.0 CG A:ARG14 4.6 45.7 1.0 O A:ALA10 4.6 37.6 1.0 C A:LYS13 4.7 42.7 1.0 CB A:LYS13 4.8 42.4 1.0 CE A:LYS13 4.9 45.7 1.0

H.Miyatake, T.Hasegawa, A.Yamano. New Methods to Prepare Iodinated Derivatives By Vaporizing Iodine Labelling (Vil) and Hydrogen Peroxide Vil (Hyper-Vil) Acta Crystallogr.,Sect.D V. 62 280 2006.
ISSN: ISSN 0907-4449
PubMed: 16510975
DOI: 10.1107/S0907444905041909