Atomistry » Iodine » PDB 2axe-2fwh » 2dfc
Atomistry »
  Iodine »
    PDB 2axe-2fwh »
      2dfc »

Iodine in PDB 2dfc: Xylanase II From Tricoderma Reesei at 293K

Enzymatic activity of Xylanase II From Tricoderma Reesei at 293K

All present enzymatic activity of Xylanase II From Tricoderma Reesei at 293K:
3.2.1.8;

Protein crystallography data

The structure of Xylanase II From Tricoderma Reesei at 293K, PDB code: 2dfc was solved by K.Harata, T.Akiba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.19
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.550, 60.030, 70.500, 90.00, 90.00, 90.00
R / Rfree (%) 10.6 / 12.2

Iodine Binding Sites:

The binding sites of Iodine atom in the Xylanase II From Tricoderma Reesei at 293K (pdb code 2dfc). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Xylanase II From Tricoderma Reesei at 293K, PDB code: 2dfc:

Iodine binding site 1 out of 1 in 2dfc

Go back to Iodine Binding Sites List in 2dfc
Iodine binding site 1 out of 1 in the Xylanase II From Tricoderma Reesei at 293K


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Xylanase II From Tricoderma Reesei at 293K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I191

b:17.2
occ:1.00
O A:HOH199 3.5 17.6 1.0
N A:SER146 3.6 13.6 1.0
OG A:SER146 3.7 17.2 0.5
O A:HOH326 4.0 32.1 0.6
CA A:ARG145 4.2 12.2 1.0
N A:SER147 4.2 14.1 1.0
CB A:ARG145 4.2 12.7 1.0
C A:ARG145 4.4 12.1 1.0
CA A:SER146 4.4 13.4 1.0
CB A:SER146 4.7 15.8 1.0
C A:SER146 4.7 14.0 1.0
CB A:SER147 5.0 14.9 1.0

Reference:

N.Watanabe, T.Akiba, R.Kanai, K.Harata. Structure of An Orthorhombic Form of Xylanase II From Trichoderma Reesei and Analysis of Thermal Displacement. Acta Crystallogr.,Sect.D V. 62 784 2006.
ISSN: ISSN 0907-4449
PubMed: 16790934
DOI: 10.1107/S0907444906017379
Page generated: Sun Aug 11 13:45:05 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy