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Iodine in PDB 2edc: Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site

Enzymatic activity of Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site

All present enzymatic activity of Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site:
3.8.1.5;

Protein crystallography data

The structure of Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site, PDB code: 2edc was solved by K.H.G.Verschueren, B.W.Dijkstra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.30
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 94.900, 73.100, 41.500, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site (pdb code 2edc). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site, PDB code: 2edc:

Iodine binding site 1 out of 1 in 2edc

Go back to Iodine Binding Sites List in 2edc
Iodine binding site 1 out of 1 in the Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I600

b:10.2
occ:1.00
 O A:HOH517 3.3 23.6 1.0
NE1 A:TRP175 3.4 4.3 1.0
NE1 A:TRP125 3.6 2.3 1.0
CD1 A:TRP125 3.8 2.3 1.0
CA A:PRO223 3.8 4.8 1.0
CG2 A:VAL226 3.9 6.3 1.0
CG A:GLU56 3.9 1.0 1.0
CB A:GLU56 3.9 1.0 1.0
N A:PRO223 4.0 4.9 1.0
CE1 A:PHE172 4.1 6.1 1.0
CB A:PRO223 4.1 5.3 1.0
C A:PHE222 4.2 2.9 1.0
O A:PHE222 4.2 3.5 1.0
CE2 A:TRP175 4.3 5.2 1.0
CD1 A:TRP175 4.3 3.5 1.0
CB A:PHE222 4.4 1.0 1.0
CZ2 A:TRP175 4.5 5.2 1.0
CD A:PRO223 4.6 4.5 1.0
OD2 A:ASP124 4.6 3.5 1.0
OD1 A:ASP124 4.6 6.7 1.0
CG A:PRO223 4.7 5.8 1.0
CD A:GLU56 4.8 1.0 1.0
CZ A:PHE172 4.8 6.4 1.0
CB A:VAL226 4.9 5.3 1.0
OE2 A:GLU56 4.9 1.0 1.0
CE2 A:TRP125 4.9 3.1 1.0
CA A:PHE222 5.0 1.0 1.0
CD1 A:PHE172 5.0 5.0 1.0

Reference:

K.H.Verschueren, J.Kingma, H.J.Rozeboom, K.H.Kalk, D.B.Janssen, B.W.Dijkstra. Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions. Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site. Biochemistry V. 32 9031 1993.
ISSN: ISSN 0006-2960
PubMed: 8369276
DOI: 10.1021/BI00086A008
Page generated: Sun Aug 11 13:45:41 2024

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