Chemical elements
  Iodine
    Isotopes
    Energy
    Production
    Application
    PDB 1a31-1hc0
    PDB 1hc9-1nq2
    PDB 1nuo-1tf9
    PDB 1tha-2anx
    PDB 2aqw-2gs7
      2aqw
      2arl
      2axe
      2b5j
      2b9x
      2be2
      2biv
      2bmk
      2bsq
      2bxl
      2bxn
      2c3n
      2c3q
      2c3v
      2c47
      2c6c
      2ceo
      2ciw
      2cj6
      2cj7
      2cj8
      2ckk
      2ckl
      2d8o
      2d8p
      2d8w
      2d91
      2d97
      2d98
      2dfb
      2dfc
      2dgm
      2eda
      2edc
      2eix
      2es4
      2esv
      2ewj
      2fds
      2fwe
      2fwf
      2fwh
      2fwz
      2g19
      2g1m
      2ggq
      2gjm
      2gkc
      2gq2
      2gs7
    PDB 2gsq-2ojv
    PDB 2ow0-2x4b
    PDB 2x4c-3d7f
    PDB 3d7h-3h1k
    PDB 3hhc-3njb
    PDB 3nsj-3vg2
    PDB 3vg6-4gdu

Iodine in the structure of Crystal Structure of Buffalo Lactoperoxidase At 2.75A Resolution (pdb 2gjm)






The binding sites of Iodine atom in the structure of Crystal Structure of Buffalo Lactoperoxidase At 2.75A Resolution (pdb code 2gjm). This binding sites where shown with 5.0 Angstroms radius around Iodine atom.
The 2gjm structure was solved by I.A.SHEIKH, A.S.ETHAYATHULLA, A.K.SINGH, N.SINGH, S.SHARMA, T.P.SINGH, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-2.8
Space groupP1211
a (A)54.240
b (A)80.472
c (A)77.348
alpha (°)90.00
beta (°)102.71
gamma (°)90.00
Rfactor (%)18.2
Rfree (%)21.6


Iodine Binding Sites:

Iodine binding site 1 out of 8 in 2gjm


Iodine binding site 1 out of 8 in 2gjm
Click to enlarge
stereopicture of Iodine binding site 1 out of 8 in 2gjm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Iodine in the PDB 2gjm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iodine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu63, A: Asn66, A: Lys67, A: Pro131, A: Lys132, A: Asn133, A: Hoh2189,

conact list:


AtomAtomDistance (A)
IOE2 A:Glu634.90
ICD A:Glu634.81
ICG A:Glu634.03
ICB A:Asn663.82
IND2 A:Asn663.35
ICG A:Asn664.09
ICE A:Lys673.97
ICD A:Lys674.85
ICG A:Lys674.94
INZ A:Lys674.63
ICB A:Pro1314.50
ICG A:Pro1314.01
IO A:Lys1324.05
IO A:Asn1334.75
IO A:Hoh21893.42

interactive model:


Iodine binding site 2 out of 8 in 2gjm


Iodine binding site 2 out of 8 in 2gjm
Click to enlarge
stereopicture of Iodine binding site 2 out of 8 in 2gjm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Iodine in the PDB 2gjm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iodine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu180, A: Pro181, A: Ser182,

conact list:


AtomAtomDistance (A)
ICB A:Glu1803.96
IOE2 A:Glu1804.21
ICD A:Glu1804.50
IC A:Glu1804.81
ICG A:Glu1804.39
ICA A:Glu1804.78
IN A:Pro1814.34
ICB A:Pro1814.79
ICD A:Pro1813.79
IC A:Pro1814.90
ICG A:Pro1814.71
ICA A:Pro1814.96
IN A:Ser1823.86
ICB A:Ser1823.73
IOG A:Ser1823.37
ICA A:Ser1824.43

interactive model:


Iodine binding site 3 out of 8 in 2gjm


Iodine binding site 3 out of 8 in 2gjm
Click to enlarge
stereopicture of Iodine binding site 3 out of 8 in 2gjm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Iodine in the PDB 2gjm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iodine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ser182, A: Leu183, A: Arg186,

conact list:


AtomAtomDistance (A)
IO A:Ser1824.36
IOG A:Ser1824.34
IC A:Ser1824.59
IN A:Leu1834.51
ICB A:Leu1834.41
ICD1 A:Leu1834.37
ICA A:Leu1834.17
ICB A:Arg1864.84
ICD A:Arg1864.60
ICZ A:Arg1863.81
ICG A:Arg1864.66
INE A:Arg1863.41
INH2 A:Arg1863.31

interactive model:


Iodine binding site 4 out of 8 in 2gjm


Iodine binding site 4 out of 8 in 2gjm
Click to enlarge
stereopicture of Iodine binding site 4 out of 8 in 2gjm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Iodine in the PDB 2gjm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iodine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Val199, A: Asn200, A: Gln201, A: Glu202, A: Pro212, A: Phe213, A: Hoh2126,

conact list:


AtomAtomDistance (A)
IO A:Val1994.50
ICB A:Asn2004.66
IND2 A:Asn2003.13
IC A:Asn2004.61
IOD1 A:Asn2004.98
ICG A:Asn2004.13
ICA A:Asn2004.12
IN A:Gln2013.99
IN A:Glu2024.87
IOE1 A:Glu2024.08
ICB A:Pro2124.49
IC A:Pro2124.26
ICA A:Pro2124.13
IO A:Phe2134.64
IN A:Phe2133.42
ICB A:Phe2134.02
ICD2 A:Phe2134.13
IC A:Phe2134.97
ICG A:Phe2134.44
ICA A:Phe2134.29
IO A:Hoh21264.41

interactive model:


Iodine binding site 5 out of 8 in 2gjm


Iodine binding site 5 out of 8 in 2gjm
Click to enlarge
stereopicture of Iodine binding site 5 out of 8 in 2gjm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Iodine in the PDB 2gjm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iodine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Gln289, A: Ile290, A: Phe293, A: Arg294, A: Trp513, A: Trp514, A: Glu515, A: Hoh2188, A: Hoh2190, A: Hoh2191,

conact list:


AtomAtomDistance (A)
IO A:Gln2894.37
IO A:Ile2904.77
ICG1 A:Ile2904.78
ICA A:Ile2904.41
ICB A:Phe2933.88
IC A:Phe2934.62
ICG A:Phe2934.93
ICA A:Phe2934.82
IN A:Arg2944.40
ICB A:Arg2944.57
ICA A:Arg2944.85
ICZ2 A:Trp5134.37
ICD1 A:Trp5144.59
ICZ2 A:Trp5143.72
ICE2 A:Trp5143.89
INE1 A:Trp5143.36
IOE1 A:Glu5154.12
ICD A:Glu5154.76
IO A:Hoh21883.41
IO A:Hoh21904.22
IO A:Hoh21912.61

interactive model:


Iodine binding site 6 out of 8 in 2gjm


Iodine binding site 6 out of 8 in 2gjm
Click to enlarge
stereopicture of Iodine binding site 6 out of 8 in 2gjm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Iodine in the PDB 2gjm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iodine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu348, A: Tyr350, A: Arg382, A: His542, A: Ile543, A: Thr544, A: Lys545,

conact list:


AtomAtomDistance (A)
IO A:Glu3483.76
ICB A:Glu3484.69
IC A:Glu3484.48
ICA A:Glu3484.37
ICE2 A:Tyr3504.32
ICZ A:Tyr3504.99
IOH A:Tyr3504.88
ICD A:Arg3824.38
ICZ A:Arg3824.18
INE A:Arg3823.45
INH2 A:Arg3824.00
IO A:His5424.59
IN A:Ile5434.90
ICB A:Ile5434.26
ICD1 A:Ile5434.65
ICG2 A:Ile5433.55
IC A:Ile5434.11
ICA A:Ile5433.72
IN A:Thr5443.48
ICB A:Thr5444.74
IOG1 A:Thr5443.72
IC A:Thr5444.85
ICA A:Thr5444.53
IO A:Lys5454.89
IN A:Lys5454.12
ICB A:Lys5454.64
ICG A:Lys5454.67
ICA A:Lys5454.96

interactive model:


Iodine binding site 7 out of 8 in 2gjm


Iodine binding site 7 out of 8 in 2gjm
Click to enlarge
stereopicture of Iodine binding site 7 out of 8 in 2gjm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Iodine in the PDB 2gjm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iodine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ala30, A: Arg31, A: Trp32, A: Leu33, A: Ser325, A: Asn326, A: Val327, A: Met430, A: Trp436, A: Hoh2081,

conact list:


AtomAtomDistance (A)
IO A:Ala304.04
IC A:Ala304.88
IN A:Arg314.88
ICB A:Arg314.66
ICD A:Arg314.24
IC A:Arg314.14
ICG A:Arg314.92
INH1 A:Arg314.75
ICA A:Arg313.90
IN A:Trp323.44
ICB A:Trp324.39
IC A:Trp324.83
ICG A:Trp324.94
ICA A:Trp324.40
IO A:Leu334.48
IN A:Leu334.20
ICB A:Ser3254.53
IC A:Ser3254.74
IN A:Asn3263.91
ICB A:Asn3263.81
IC A:Asn3264.17
ICA A:Asn3264.17
IN A:Val3273.48
ICB A:Val3273.79
ICG1 A:Val3273.89
ICA A:Val3274.21
ICE A:Met4304.05
ISD A:Met4304.72
ICZ3 A:Trp4364.87
ICZ2 A:Trp4363.99
ICH2 A:Trp4363.69
IO A:Hoh20813.31

interactive model:


Iodine binding site 8 out of 8 in 2gjm


Iodine binding site 8 out of 8 in 2gjm
Click to enlarge
stereopicture of Iodine binding site 8 out of 8 in 2gjm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Iodine in the PDB 2gjm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iodine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Gln444, A: Pro445, A: Lys446, A: Thr447, A: Gly450, A: Hoh2115,

conact list:


AtomAtomDistance (A)
IO A:Gln4444.97
ICB A:Pro4454.68
IC A:Pro4454.08
ICA A:Pro4454.00
IN A:Lys4463.19
ICB A:Lys4464.17
IC A:Lys4464.20
ICG A:Lys4464.80
ICA A:Lys4464.01
IO A:Thr4474.85
IN A:Thr4473.48
ICB A:Thr4474.16
ICG2 A:Thr4474.08
IOG1 A:Thr4473.42
ICA A:Thr4474.38
IN A:Gly4504.47
ICA A:Gly4504.00
IO A:Hoh21154.65

interactive model:




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