Iodine in PDB 2i8e: Structure of SSO1404, A Predicted Dna Repair-Associated Protein From Sulfolobus Solfataricus P2

The structure of Structure of SSO1404, A Predicted Dna Repair-Associated Protein From Sulfolobus Solfataricus P2, PDB code: 2i8e was solved by S.Wang, M.D.Zimmerman, M.Kudritska, M.Chruszcz, A.Savchenko, A.Edwards, A.Joachimiak, W.Minor, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.94 / 1.59
Space group	P 62
Cell size a, b, c (Å), α, β, γ (°)	64.277, 64.277, 39.529, 90.00, 90.00, 120.00
R / Rfree (%)	18.8 / 22.7

The binding sites of Iodine atom in the Structure of SSO1404, A Predicted Dna Repair-Associated Protein From Sulfolobus Solfataricus P2 (pdb code 2i8e). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 4 binding sites of Iodine where determined in the Structure of SSO1404, A Predicted Dna Repair-Associated Protein From Sulfolobus Solfataricus P2, PDB code: 2i8e:
Jump to Iodine binding site number: 1; 2; 3; 4;

Iodine binding site 1 out of 4 in the Structure of SSO1404, A Predicted Dna Repair-Associated Protein From Sulfolobus Solfataricus P2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structure of SSO1404, A Predicted Dna Repair-Associated Protein From Sulfolobus Solfataricus P2 within 5.0Å range: probe atom residue distance (Å) B Occ A:I102 b:26.2 occ:0.15 CD A:ARG19 3.7 15.3 1.0 CD2 A:LEU16 3.7 18.4 1.0 NH1 A:ARG19 3.8 18.6 1.0 CB A:ASN15 4.1 20.5 1.0 NH2 A:ARG59 4.3 37.0 1.0 C A:ASN15 4.3 19.3 1.0 O A:ASN15 4.4 18.3 1.0 N A:LEU16 4.5 18.2 1.0 CG A:LEU16 4.6 18.5 1.0 CG A:ARG19 4.6 22.5 1.0 NE A:ARG19 4.6 19.6 1.0 CZ A:ARG19 4.7 17.1 1.0 CA A:LEU16 4.7 17.6 1.0 CZ A:ARG59 4.9 35.2 1.0 O A:HOH130 4.9 30.0 1.0 CA A:ASN15 4.9 19.7 1.0

Iodine binding site 2 out of 4 in the Structure of SSO1404, A Predicted Dna Repair-Associated Protein From Sulfolobus Solfataricus P2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Structure of SSO1404, A Predicted Dna Repair-Associated Protein From Sulfolobus Solfataricus P2 within 5.0Å range: probe atom residue distance (Å) B Occ A:I103 b:28.0 occ:0.55 OG A:SER44 3.6 22.5 1.0 O A:HOH126 3.9 25.7 1.0 ND2 A:ASN42 3.9 14.0 1.0 CB A:SER44 4.4 18.3 1.0

Iodine binding site 3 out of 4 in the Structure of SSO1404, A Predicted Dna Repair-Associated Protein From Sulfolobus Solfataricus P2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Structure of SSO1404, A Predicted Dna Repair-Associated Protein From Sulfolobus Solfataricus P2 within 5.0Å range: probe atom residue distance (Å) B Occ A:I104 b:26.9 occ:0.30 O A:HOH175 2.7 37.9 1.0 O A:HOH174 3.3 36.5 1.0 N A:LYS61 3.4 24.7 0.4 N A:LYS61 3.4 25.1 0.6 CB A:LYS61 3.7 24.0 0.4 CB A:LYS61 3.7 25.4 0.6 CA A:LYS60 4.1 25.4 1.0 CA A:LYS61 4.2 23.6 0.4 CA A:LYS61 4.2 24.2 0.6 C A:LYS60 4.3 25.4 1.0 CB A:LYS60 4.5 26.2 1.0 CG A:LYS60 4.6 28.6 1.0 O A:ARG59 4.6 21.6 1.0 CE A:LYS61 4.9 14.4 0.4 CG A:LYS61 5.0 20.7 0.4

Iodine binding site 4 out of 4 in the Structure of SSO1404, A Predicted Dna Repair-Associated Protein From Sulfolobus Solfataricus P2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Structure of SSO1404, A Predicted Dna Repair-Associated Protein From Sulfolobus Solfataricus P2 within 5.0Å range: probe atom residue distance (Å) B Occ A:I105 b:27.4 occ:0.25 NE A:ARG45 3.0 21.0 1.0 O A:HOH177 3.3 18.1 1.0 O A:LYS27 3.4 24.0 1.0 CD A:ARG45 3.8 16.2 1.0 NH2 A:ARG45 3.9 21.1 1.0 CZ A:ARG45 3.9 20.3 1.0 CG A:ARG45 3.9 16.9 1.0 CD A:LYS27 4.0 18.6 1.0 CA A:LYS27 4.1 21.6 1.0 CB A:LYS27 4.1 21.9 1.0 C A:LYS27 4.2 22.3 1.0 OD2 A:ASP48 4.3 28.9 1.0 CB A:ARG45 4.3 16.2 1.0 CG A:LYS27 4.7 21.3 1.0

N.Beloglazova, G.Brown, M.D.Zimmerman, M.Proudfoot, K.S.Makarova, M.Kudritska, S.Kochinyan, S.Wang, M.Chruszcz, W.Minor, E.V.Koonin, A.M.Edwards, A.Savchenko, A.F.Yakunin. A Novel Family of Sequence-Specific Endoribonucleases Associated with the Clustered Regularly Interspaced Short Palindromic Repeats. J.Biol.Chem. V. 283 20361 2008.
ISSN: ISSN 0021-9258
PubMed: 18482976
DOI: 10.1074/JBC.M803225200