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Iodine in PDB 2id1: X-Ray Crystal Structure of Protein CV0518 From Chromobacterium Violaceum, Northeast Structural Genomics Consortium Target CVR5.

Protein crystallography data

The structure of X-Ray Crystal Structure of Protein CV0518 From Chromobacterium Violaceum, Northeast Structural Genomics Consortium Target CVR5., PDB code: 2id1 was solved by F.Forouhar, W.Zhou, J.Seetharaman, C.K.Ho, H.Janjua, K.Cunningham, L.C.Ma, R.Xiao, J.Liu, M.Baran, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.68 / 3.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.188, 76.099, 74.550, 90.00, 90.00, 90.00
R / Rfree (%) 22.8 / 26.9

Iodine Binding Sites:

The binding sites of Iodine atom in the X-Ray Crystal Structure of Protein CV0518 From Chromobacterium Violaceum, Northeast Structural Genomics Consortium Target CVR5. (pdb code 2id1). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the X-Ray Crystal Structure of Protein CV0518 From Chromobacterium Violaceum, Northeast Structural Genomics Consortium Target CVR5., PDB code: 2id1:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 2id1

Go back to Iodine Binding Sites List in 2id1
Iodine binding site 1 out of 2 in the X-Ray Crystal Structure of Protein CV0518 From Chromobacterium Violaceum, Northeast Structural Genomics Consortium Target CVR5.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of X-Ray Crystal Structure of Protein CV0518 From Chromobacterium Violaceum, Northeast Structural Genomics Consortium Target CVR5. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I131

b:37.0
occ:1.00
NE1 A:TRP104 3.6 34.7 1.0
ND2 B:ASN53 3.6 33.0 1.0
CE A:MSE37 3.8 65.3 1.0
CZ2 A:TRP104 3.9 35.4 1.0
CA B:ALA50 4.0 26.8 1.0
CB B:ALA50 4.1 25.4 1.0
CE2 A:TRP104 4.1 35.5 1.0
CG B:ASN53 4.6 31.5 1.0
CB B:ASN53 4.6 31.6 1.0
NE2 A:HIS88 4.6 26.6 1.0
N B:ALA50 4.7 28.3 1.0
CE1 A:HIS88 4.7 27.4 1.0
CZ A:PHE34 4.7 41.5 1.0
CD1 A:TRP104 4.8 35.6 1.0
CD1 A:ILE100 4.8 43.5 1.0
CB A:ILE100 4.9 43.0 1.0
SE A:MSE37 4.9 67.3 1.0
CD1 A:LEU103 4.9 38.7 1.0
O B:LYS49 5.0 30.4 1.0

Iodine binding site 2 out of 2 in 2id1

Go back to Iodine Binding Sites List in 2id1
Iodine binding site 2 out of 2 in the X-Ray Crystal Structure of Protein CV0518 From Chromobacterium Violaceum, Northeast Structural Genomics Consortium Target CVR5.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of X-Ray Crystal Structure of Protein CV0518 From Chromobacterium Violaceum, Northeast Structural Genomics Consortium Target CVR5. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I131

b:43.8
occ:1.00
NE1 B:TRP104 3.7 34.9 1.0
CE B:MSE37 3.9 66.5 1.0
CZ2 B:TRP104 4.1 36.5 1.0
CE2 B:TRP104 4.3 35.8 1.0
NE2 B:HIS88 4.6 26.6 1.0
CE1 B:HIS88 4.7 28.1 1.0
CD1 B:ILE100 4.8 41.7 1.0
CB B:ILE100 4.9 42.4 1.0
CZ B:PHE34 4.9 41.6 1.0
CD1 B:LEU103 4.9 41.5 1.0
CD1 B:TRP104 4.9 36.0 1.0

Reference:

F.Forouhar, W.Zhou, J.Seetharaman, C.K.Ho, H.Janjua, K.Cunningham, L.C.Ma, R.Xiao, J.Liu, M.Baran, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg). N/A N/A.
Page generated: Sun Dec 13 19:24:20 2020

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