Iodine in PDB 2j7p: Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy

The structure of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy, PDB code: 2j7p was solved by D.M.Freymann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.94 / 1.97
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	51.029, 129.556, 88.964, 90.00, 91.66, 90.00
R / Rfree (%)	18.4 / 22.7

The structure of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy also contains other interesting chemical elements:

Magnesium	(Mg)	4 atoms
Potassium	(K)	2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Iodine atom in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy (pdb code 2j7p). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 16 binding sites of Iodine where determined in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy, PDB code: 2j7p:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 16 in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range: probe atom residue distance (Å) B Occ A:I1299 b:54.5 occ:0.75 NH1 A:ARG181 3.2 39.7 1.0 CE A:LYS123 3.8 33.8 1.0 CD A:PRO129 4.0 27.5 1.0 O A:GLY153 4.1 30.0 1.0 CG A:LYS123 4.1 31.2 1.0 CZ A:ARG181 4.2 40.4 1.0 CD A:LYS123 4.2 31.7 1.0 NH2 A:ARG181 4.4 40.5 1.0 NZ A:LYS123 4.4 35.2 1.0 CA A:ARG128 4.4 29.4 1.0 NH1 A:ARG128 4.6 35.1 1.0 CG2 A:VAL154 4.6 26.2 1.0 CG A:ARG128 4.7 30.3 1.0 O A:ARG127 4.7 31.5 1.0 N A:PRO129 4.7 27.3 1.0 CB A:ARG128 4.7 29.7 1.0 C A:ARG128 4.9 28.3 1.0 CB A:LYS123 5.0 30.4 1.0

Iodine binding site 2 out of 16 in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range: probe atom residue distance (Å) B Occ A:I1300 b:33.4 occ:0.60 O A:HOH2151 3.0 28.2 1.0 O A:HOH2147 3.1 25.3 1.0 CG A:ARG286 3.6 24.9 0.5 O A:HOH2144 3.8 56.0 1.0 CD A:ARG286 3.9 27.4 0.5 N A:LEU287 4.0 22.2 1.0 CD1 A:LEU287 4.0 27.4 1.0 CA A:LEU287 4.0 21.6 1.0 C A:ARG286 4.1 22.7 0.5 O A:ARG286 4.2 22.8 0.5 CB A:ARG286 4.2 23.5 0.5 CB A:LEU287 4.2 21.3 1.0 C A:ARG286 4.3 22.7 0.5 CD2 A:LEU247 4.3 19.2 1.0 CD A:ARG290 4.4 24.7 1.0 NH1 A:ARG290 4.4 27.7 1.0 CB A:ARG286 4.4 23.4 0.5 CD1 A:LEU247 4.4 18.7 1.0 CG A:ARG286 4.5 24.9 0.5 O A:ARG286 4.6 22.7 0.5 NE A:ARG286 4.6 28.6 0.5 CG A:LEU287 4.7 23.1 1.0 CG A:LEU247 4.8 18.6 1.0 CD A:ARG286 4.8 25.6 0.5 CE1 A:PHE282 4.8 19.4 1.0 CA A:ARG286 4.9 23.0 0.5 CA A:ARG286 4.9 23.0 0.5 CB A:ARG290 5.0 21.4 1.0

Iodine binding site 3 out of 16 in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range: probe atom residue distance (Å) B Occ A:I1301 b:38.3 occ:0.50 CD A:PRO165 3.8 32.2 1.0 CB A:SER164 3.8 32.2 1.0 N A:GLU166 4.2 32.3 1.0 CB A:GLU166 4.2 34.2 1.0 OG A:SER164 4.3 33.4 1.0 N A:PRO165 4.4 31.9 1.0 CG A:PRO165 4.6 32.4 1.0 CA A:SER164 4.8 32.4 1.0 CB A:PRO165 4.8 31.6 1.0 C A:SER164 4.9 31.9 1.0 CA A:GLU166 4.9 33.1 1.0

Iodine binding site 4 out of 16 in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range: probe atom residue distance (Å) B Occ A:I1302 b:42.9 occ:0.50 O A:HOH2107 2.6 28.0 1.0 O A:HOH2103 3.1 20.7 1.0 NH2 A:ARG191 3.8 18.8 1.0 NH1 A:ARG191 3.8 18.3 1.0 O A:HOH2035 3.9 38.0 1.0 CD2 A:LEU205 4.0 25.6 1.0 CA A:LEU202 4.1 22.0 1.0 CZ A:ARG191 4.2 20.5 1.0 N A:LEU202 4.2 23.0 1.0 CD1 A:LEU202 4.4 20.3 1.0 C A:GLU201 4.4 23.2 1.0 CB A:LEU205 4.4 22.9 1.0 O A:GLU201 4.4 22.4 1.0 OE1 A:GLU201 4.5 39.7 1.0 CB A:GLU201 4.5 24.3 1.0 CB A:LEU202 4.7 21.1 1.0 CG A:LEU205 4.8 23.6 1.0 CB A:THR188 4.8 18.4 1.0 O A:HOH2076 4.9 30.7 1.0 O A:HOH2110 4.9 24.1 1.0

Iodine binding site 5 out of 16 in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range: probe atom residue distance (Å) B Occ A:I1303 b:33.6 occ:0.90 O A:HOH2047 3.5 28.3 1.0 N A:GLY18 3.7 29.4 1.0 CA A:ARG17 4.2 29.2 1.0 CB A:THR69 4.2 22.8 1.0 CG2 A:THR69 4.3 22.1 1.0 CB A:ARG17 4.3 29.3 1.0 CA A:THR69 4.4 22.5 1.0 CG A:ARG17 4.4 30.0 1.0 CG A:GLU72 4.4 27.6 1.0 O A:HOH2044 4.5 31.4 1.0 C A:ARG17 4.5 29.2 1.0 CB A:ALA71 4.6 22.8 1.0 CA A:GLY18 4.6 29.6 1.0 CD A:ARG17 4.7 34.3 1.0 NE A:ARG17 4.8 40.0 1.0

Iodine binding site 6 out of 16 in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range: probe atom residue distance (Å) B Occ B:I1297 b:42.1 occ:0.90 O B:HOH2010 3.3 34.4 1.0 N B:GLY18 3.9 26.5 1.0 CB B:THR69 4.0 25.5 1.0 CA B:ARG17 4.1 26.8 1.0 CA B:THR69 4.1 25.0 1.0 CG2 B:THR69 4.2 26.3 1.0 CG B:GLU72 4.2 30.5 1.0 CB B:ARG17 4.3 27.2 1.0 CB B:ALA71 4.4 22.4 1.0 CG B:ARG17 4.5 30.3 1.0 C B:ARG17 4.5 26.4 1.0 CD B:ARG17 4.6 33.9 1.0 NE B:ARG17 4.7 38.7 1.0 C B:THR69 4.7 24.1 1.0 N B:GLU72 4.7 25.2 1.0 CA B:GLY18 4.8 26.1 1.0 CB B:GLU72 4.9 26.4 1.0 O B:THR69 5.0 23.6 1.0

Iodine binding site 7 out of 16 in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range: probe atom residue distance (Å) B Occ B:I1298 b:36.9 occ:0.70 O A:HOH2016 3.0 43.0 1.0 CD A:ARG32 3.9 35.3 1.0 N B:ASP97 3.9 30.5 1.0 CB B:LYS96 4.0 31.3 1.0 CB B:ASP97 4.1 31.1 1.0 CA A:ALA29 4.2 27.1 1.0 N A:ALA29 4.2 27.1 1.0 CD A:LYS28 4.3 35.8 1.0 O A:LYS28 4.3 27.6 1.0 CG A:LYS28 4.3 32.3 1.0 CG B:ASP97 4.3 33.1 1.0 C A:LYS28 4.3 27.8 1.0 CD B:LYS96 4.5 38.8 1.0 CA B:ASP97 4.6 30.4 1.0 CB A:LYS28 4.6 29.3 1.0 OD2 B:ASP97 4.6 36.2 1.0 CE A:LYS28 4.6 37.9 1.0 CG B:LYS96 4.7 36.0 1.0 CB A:ARG32 4.7 26.8 1.0 NE A:ARG32 4.7 42.5 1.0 OD1 B:ASP97 4.7 34.2 1.0 CB A:ALA29 4.8 27.3 1.0 NZ B:LYS96 4.8 43.2 1.0 CA B:LYS96 4.8 31.1 1.0 C B:LYS96 4.9 30.9 1.0 CG A:ARG32 4.9 30.0 1.0 O A:HOH2020 5.0 37.3 1.0

Iodine binding site 8 out of 16 in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range: probe atom residue distance (Å) B Occ B:I1299 b:37.9 occ:0.75 CG B:MET39 3.6 27.4 1.0 NH2 B:ARG35 3.6 30.9 0.5 CG B:ARG36 3.8 24.1 0.5 NE B:ARG35 3.8 27.2 0.5 CZ B:ARG35 3.9 30.0 0.5 CG B:ARG36 4.1 21.8 0.5 NH2 B:ARG32 4.2 37.1 0.5 CG B:ARG35 4.2 25.0 0.5 CA B:ARG36 4.2 22.6 0.5 CB B:MET39 4.2 25.9 1.0 CD2 E:LEU46 4.2 31.8 1.0 CA B:ARG36 4.2 22.0 0.5 O B:ARG35 4.2 22.3 0.5 CD1 E:LEU40 4.3 25.6 1.0 O B:ARG35 4.4 22.1 0.5 N B:ARG36 4.4 22.1 0.5 N B:ARG36 4.4 22.5 0.5 C B:ARG35 4.5 22.3 0.5 C B:ARG35 4.5 22.0 0.5 CB B:ARG36 4.6 23.1 0.5 CD B:ARG35 4.6 27.6 0.5 CD1 E:LEU46 4.6 27.6 1.0 CZ B:ARG32 4.6 37.5 0.5 NE B:ARG36 4.7 30.3 0.5 CD B:ARG35 4.7 26.2 0.5 CB B:ARG35 4.7 22.8 0.5 CB B:ARG36 4.7 22.0 0.5 SD B:MET39 4.7 30.8 0.5 CG B:ARG35 4.8 24.4 0.5 NE B:ARG32 4.8 35.8 0.5 NH1 B:ARG35 4.8 29.6 0.5 CD B:ARG36 4.8 27.1 0.5 CG E:LEU46 4.9 29.9 1.0 CB B:ARG35 5.0 22.9 0.5

Iodine binding site 9 out of 16 in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range: probe atom residue distance (Å) B Occ B:I1300 b:46.8 occ:0.70 NH1 B:ARG181 3.5 34.0 1.0 NZ B:LYS123 3.8 35.8 1.0 CD B:LYS123 4.0 30.3 1.0 CE B:LYS123 4.1 33.4 1.0 CG B:LYS123 4.1 29.4 1.0 CD B:PRO129 4.1 24.5 1.0 O B:GLY153 4.1 25.9 1.0 CA B:ARG128 4.3 27.9 1.0 NH2 B:ARG181 4.4 35.9 1.0 CZ B:ARG181 4.4 37.0 1.0 CG B:ARG128 4.5 29.3 1.0 O B:ARG127 4.5 30.1 1.0 NH1 B:ARG128 4.6 30.8 1.0 CB B:ARG128 4.7 28.0 1.0 N B:PRO129 4.7 25.2 1.0 C B:ARG128 4.9 26.5 1.0 CG2 B:VAL154 4.9 23.9 1.0 CB B:LYS123 4.9 28.5 1.0

Iodine binding site 10 out of 16 in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range: probe atom residue distance (Å) B Occ B:I1301 b:41.3 occ:0.60 O B:HOH2162 2.7 24.6 1.0 O B:HOH2159 2.8 27.6 1.0 CD1 B:LEU287 4.0 27.0 1.0 N B:LEU287 4.0 25.3 1.0 CA B:LEU287 4.1 24.8 1.0 CD1 B:LEU247 4.2 21.7 1.0 CB B:ARG286 4.2 27.6 1.0 CD2 B:LEU247 4.2 19.1 1.0 CB B:LEU287 4.3 23.9 1.0 CD B:ARG290 4.3 28.3 1.0 C B:ARG286 4.3 26.1 1.0 NH1 B:ARG290 4.3 29.7 1.0 O B:ARG286 4.6 27.2 1.0 CG B:LEU247 4.6 21.2 1.0 CG B:LEU287 4.8 25.4 1.0 NE B:ARG286 4.8 41.4 1.0 CB B:LEU247 4.9 20.2 1.0 CB B:ARG290 4.9 24.0 1.0 CA B:ARG286 4.9 27.3 1.0 CZ B:ARG286 5.0 45.2 1.0 CE1 B:PHE282 5.0 25.9 1.0

J.Gawronski-Salerno, D.M.Freymann. Structure of the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy. J.Struct.Biol. V. 158 122 2007.
ISSN: ISSN 1047-8477
PubMed: 17184999
DOI: 10.1016/J.JSB.2006.10.025