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Iodine in PDB 2p71: Bombyx Mori Pheromone Binding Protein Bound to Iodohexadecane

Protein crystallography data

The structure of Bombyx Mori Pheromone Binding Protein Bound to Iodohexadecane, PDB code: 2p71 was solved by C.L.Lautenschlager, J.Clardy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.76 / 2.01
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 83.790, 83.790, 34.880, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 26.5

Iodine Binding Sites:

The binding sites of Iodine atom in the Bombyx Mori Pheromone Binding Protein Bound to Iodohexadecane (pdb code 2p71). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Bombyx Mori Pheromone Binding Protein Bound to Iodohexadecane, PDB code: 2p71:

Iodine binding site 1 out of 1 in 2p71

Go back to Iodine Binding Sites List in 2p71
Iodine binding site 1 out of 1 in the Bombyx Mori Pheromone Binding Protein Bound to Iodohexadecane


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Bombyx Mori Pheromone Binding Protein Bound to Iodohexadecane within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I300

b:61.5
occ:1.00
I1 A:IHD300 0.0 61.5 1.0
C2 A:IHD300 2.2 50.1 1.0
C3 A:IHD300 3.0 49.4 1.0
CD1 A:LEU68 3.1 43.5 1.0
C6 A:IHD300 3.5 46.6 1.0
OG A:SER56 3.8 26.0 1.0
C4 A:IHD300 4.0 47.3 1.0
C5 A:IHD300 4.3 43.6 1.0
CB A:SER56 4.3 23.2 1.0
CB A:MET61 4.5 30.3 1.0
CG A:LEU68 4.5 40.8 1.0
CG1 A:VAL94 4.6 26.3 1.0
SD A:MET61 4.8 34.2 1.0
C7 A:IHD300 4.8 41.2 1.0
C8 A:IHD300 4.8 47.0 1.0
CE A:MET61 4.9 26.7 1.0
O A:MET61 4.9 32.7 1.0

Reference:

C.Lautenschlager, W.S.Leal, J.Clardy. Bombyx Mori Pheromone-Binding Protein Binding Nonpheromone Ligands: Implications For Pheromone Recognition. Structure V. 15 1148 2007.
ISSN: ISSN 0969-2126
PubMed: 17850754
DOI: 10.1016/J.STR.2007.07.013
Page generated: Sun Jan 24 17:24:13 2021

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