Atomistry » Iodine » PDB 2qpy-2y4s » 2wko
Atomistry »
  Iodine »
    PDB 2qpy-2y4s »
      2wko »

Iodine in PDB 2wko: Structure of Metal Loaded Pathogenic SOD1 Mutant G93A.

Enzymatic activity of Structure of Metal Loaded Pathogenic SOD1 Mutant G93A.

All present enzymatic activity of Structure of Metal Loaded Pathogenic SOD1 Mutant G93A.:
1.15.1.1;

Protein crystallography data

The structure of Structure of Metal Loaded Pathogenic SOD1 Mutant G93A., PDB code: 2wko was solved by S.V.Antonyuk, A.Galaleldeen, R.Strange, L.Whitson, N.Narayana, A.Taylor, J.P.Schuermann, S.P.Holloway, S.S.Hasnain, P.J.Hart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.80 / 1.97
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.488, 47.157, 56.356, 90.00, 90.38, 90.00
R / Rfree (%) 17.36 / 23.072

Other elements in 2wko:

The structure of Structure of Metal Loaded Pathogenic SOD1 Mutant G93A. also contains other interesting chemical elements:

Copper (Cu) 2 atoms
Zinc (Zn) 2 atoms

Iodine Binding Sites:

The binding sites of Iodine atom in the Structure of Metal Loaded Pathogenic SOD1 Mutant G93A. (pdb code 2wko). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 4 binding sites of Iodine where determined in the Structure of Metal Loaded Pathogenic SOD1 Mutant G93A., PDB code: 2wko:
Jump to Iodine binding site number: 1; 2; 3; 4;

Iodine binding site 1 out of 4 in 2wko

Go back to Iodine Binding Sites List in 2wko
Iodine binding site 1 out of 4 in the Structure of Metal Loaded Pathogenic SOD1 Mutant G93A.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structure of Metal Loaded Pathogenic SOD1 Mutant G93A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I160

b:31.2
occ:0.50
I A:IOD160 0.0 31.2 0.5
O A:HOH2129 1.5 11.3 1.0
I A:IOD160 1.5 31.2 0.2
O A:HOH2128 3.0 41.8 1.0
NH2 A:ARG143 3.8 27.0 1.0
CA A:PRO62 4.0 23.2 1.0
CB A:PRO62 4.0 23.2 1.0
N A:PRO62 4.2 23.9 1.0
NZ A:LYS136 4.4 36.2 1.0
O A:GLY61 4.5 23.0 1.0
C A:GLY61 4.5 23.3 1.0
CD A:PRO62 4.8 23.8 1.0
O A:HOH2056 4.9 28.5 1.0
CG A:PRO62 5.0 24.2 1.0

Iodine binding site 2 out of 4 in 2wko

Go back to Iodine Binding Sites List in 2wko
Iodine binding site 2 out of 4 in the Structure of Metal Loaded Pathogenic SOD1 Mutant G93A.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Structure of Metal Loaded Pathogenic SOD1 Mutant G93A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I160

b:31.2
occ:0.25
I A:IOD160 0.0 31.2 0.2
O A:HOH2129 0.3 11.3 1.0
I A:IOD160 1.5 31.2 0.5
NH2 A:ARG143 3.6 27.0 1.0
C A:GLY61 3.7 23.3 1.0
N A:PRO62 3.8 23.9 1.0
O A:GLY61 3.9 23.0 1.0
CA A:PRO62 4.1 23.2 1.0
O A:HOH2128 4.1 41.8 1.0
CD A:PRO62 4.3 23.8 1.0
CA A:GLY61 4.3 23.4 1.0
CB A:PRO62 4.3 23.2 1.0
O A:HOH2053 4.4 37.6 1.0
O A:HOH2132 4.4 62.8 1.0
CZ A:ARG143 4.7 25.8 1.0
CG A:PRO62 4.9 24.2 1.0
NH1 A:ARG143 4.9 22.7 1.0

Iodine binding site 3 out of 4 in 2wko

Go back to Iodine Binding Sites List in 2wko
Iodine binding site 3 out of 4 in the Structure of Metal Loaded Pathogenic SOD1 Mutant G93A.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Structure of Metal Loaded Pathogenic SOD1 Mutant G93A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I161

b:29.7
occ:0.70
N A:LYS75 3.8 31.2 1.0
CD A:PRO74 3.8 25.7 1.0
CB A:LYS75 3.9 31.3 0.5
N A:PRO74 4.1 26.0 1.0
CA A:GLY73 4.1 24.4 1.0
CG A:PRO74 4.3 28.4 1.0
C A:GLY73 4.3 24.9 1.0
O A:HOH2079 4.3 27.8 1.0
CA A:LYS75 4.4 32.5 1.0
CD1 A:LEU126 4.5 27.7 1.0
O A:HOH2067 4.8 64.5 1.0
C A:PRO74 4.8 29.4 1.0
OD1 A:ASP76 4.9 42.2 1.0
N A:ASP76 4.9 34.8 1.0
C A:LYS75 4.9 33.6 1.0
OD2 A:ASP76 4.9 41.2 1.0
CA A:PRO74 5.0 27.8 1.0

Iodine binding site 4 out of 4 in 2wko

Go back to Iodine Binding Sites List in 2wko
Iodine binding site 4 out of 4 in the Structure of Metal Loaded Pathogenic SOD1 Mutant G93A.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Structure of Metal Loaded Pathogenic SOD1 Mutant G93A. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:I161

b:35.3
occ:0.50
O F:HOH2087 2.7 42.6 1.0
O F:HOH2040 3.5 45.3 1.0
CD F:PRO74 3.8 21.0 1.0
N F:LYS75 3.8 22.2 1.0
CA F:GLY73 3.8 20.1 1.0
N F:PRO74 4.0 20.8 1.0
C F:GLY73 4.0 21.0 1.0
CB F:LYS75 4.0 23.5 1.0
CD1 F:LEU126 4.2 23.3 1.0
CG F:PRO74 4.3 20.2 1.0
OD2 F:ASP76 4.3 33.0 1.0
CA F:LYS75 4.4 23.1 1.0
CG F:LYS75 4.6 24.3 1.0
CG F:ASP76 4.6 30.2 1.0
OD1 F:ASP76 4.6 33.2 1.0
O F:GLY73 4.7 20.9 1.0
N F:ASP76 4.7 24.1 1.0
C F:LYS75 4.8 24.1 1.0
N F:GLY73 4.8 20.0 1.0
C F:PRO74 4.8 21.6 1.0
CA F:PRO74 4.9 20.6 1.0
CD2 F:LEU126 4.9 17.5 1.0
CG F:LEU126 5.0 21.9 1.0

Reference:

A.Galaleldeen, R.W.Strange, L.J.Whitson, S.V.Antonyuk, N.Narayana, A.B.Taylor, J.P.Schuermann, S.P.Holloway, S.S.Hasnain, P.J.Hart. Structural and Biophysical Properties of Metal- Free Pathogenic SOD1 Mutants A4V and G93A. Arch.Biochem.Biophys. V. 492 40 2009.
ISSN: ISSN 0003-9861
PubMed: 19800308
DOI: 10.1016/J.ABB.2009.09.020
Page generated: Sun Dec 13 19:25:33 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy