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Iodine in PDB 2yfv: The Heterotrimeric Complex of Kluyveromyces Lactis SCM3, CSE4 and H4

Protein crystallography data

The structure of The Heterotrimeric Complex of Kluyveromyces Lactis SCM3, CSE4 and H4, PDB code: 2yfv was solved by U.S.Cho, S.C.Harrison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.32
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 32.723, 65.530, 121.097, 90.00, 90.00, 90.00
R / Rfree (%) 22.026 / 25.712

Iodine Binding Sites:

The binding sites of Iodine atom in the The Heterotrimeric Complex of Kluyveromyces Lactis SCM3, CSE4 and H4 (pdb code 2yfv). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the The Heterotrimeric Complex of Kluyveromyces Lactis SCM3, CSE4 and H4, PDB code: 2yfv:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 2yfv

Go back to Iodine Binding Sites List in 2yfv
Iodine binding site 1 out of 2 in the The Heterotrimeric Complex of Kluyveromyces Lactis SCM3, CSE4 and H4


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of The Heterotrimeric Complex of Kluyveromyces Lactis SCM3, CSE4 and H4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I1181

b:51.9
occ:1.00
O A:HOH2009 2.9 54.9 1.0
CE1 C:HIS67 3.8 38.4 1.0
CB A:HIS155 4.0 35.0 1.0
CD1 A:ILE179 4.0 56.6 1.0
ND1 C:HIS67 4.0 40.0 1.0
ND1 A:HIS155 4.1 36.5 1.0
CD1 A:LEU159 4.1 35.0 1.0
CA A:ALA176 4.1 41.7 1.0
CB A:ALA176 4.3 39.3 1.0
CG A:HIS155 4.3 36.5 1.0
CG A:LEU159 4.5 35.0 1.0
CD2 A:LEU159 4.6 30.7 1.0
CB A:ILE179 4.7 58.9 1.0
CG2 A:ILE179 4.7 59.6 1.0
NE2 C:HIS67 4.8 35.0 1.0
O A:HIS155 4.8 34.9 1.0
CG1 A:ILE179 4.9 59.0 1.0
CA A:HIS155 4.9 35.0 1.0
O A:ALA176 5.0 45.0 1.0
N A:ALA176 5.0 40.7 1.0

Iodine binding site 2 out of 2 in 2yfv

Go back to Iodine Binding Sites List in 2yfv
Iodine binding site 2 out of 2 in the The Heterotrimeric Complex of Kluyveromyces Lactis SCM3, CSE4 and H4


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of The Heterotrimeric Complex of Kluyveromyces Lactis SCM3, CSE4 and H4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I1182

b:45.4
occ:1.00
CD1 A:LEU175 4.5 47.8 1.0
CD1 A:ILE179 4.8 56.6 1.0

Reference:

U.S.Cho, S.C.Harrison. Recognition of the Centromere-Specific Histone CSE4 By the Chaperone SCM3. Proc.Natl.Acad.Sci.Usa V. 108 9367 2011.
ISSN: ISSN 0027-8424
PubMed: 21606327
DOI: 10.1073/PNAS.1106389108
Page generated: Sun Dec 13 19:25:57 2020

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