Iodine in PDB 3cjq: Ribosomal Protein L11 Methyltransferase (Prma) in Complex with Dimethylated Ribosomal Protein L11 in Space Group P212121

The structure of Ribosomal Protein L11 Methyltransferase (Prma) in Complex with Dimethylated Ribosomal Protein L11 in Space Group P212121, PDB code: 3cjq was solved by H.Demirci, S.T.Gregory, A.E.Dahlberg, G.Jogl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.09 / 2.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.526, 164.976, 180.341, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 27.1

The binding sites of Iodine atom in the Ribosomal Protein L11 Methyltransferase (Prma) in Complex with Dimethylated Ribosomal Protein L11 in Space Group P212121 (pdb code 3cjq). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Ribosomal Protein L11 Methyltransferase (Prma) in Complex with Dimethylated Ribosomal Protein L11 in Space Group P212121, PDB code: 3cjq:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in the Ribosomal Protein L11 Methyltransferase (Prma) in Complex with Dimethylated Ribosomal Protein L11 in Space Group P212121


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Ribosomal Protein L11 Methyltransferase (Prma) in Complex with Dimethylated Ribosomal Protein L11 in Space Group P212121 within 5.0Å range: probe atom residue distance (Å) B Occ B:I148 b:59.1 occ:0.80 N B:LYS2 3.4 59.2 1.0 CG B:LYS2 3.9 63.2 1.0 CD2 A:TYR193 3.9 49.3 1.0 C5' A:SAH303 4.0 33.6 1.0 CE2 A:TYR193 4.0 49.0 1.0 CA B:2MM1 4.1 53.0 1.0 C8 A:SAH303 4.2 48.9 1.0 CN1 B:2MM1 4.3 50.5 1.0 CD B:LYS2 4.5 64.4 1.0 CB B:LYS2 4.5 61.4 1.0 C2' A:SAH303 4.5 39.2 1.0 CA B:LYS2 4.5 61.3 1.0 C B:2MM1 4.6 53.3 1.0 C4' A:SAH303 4.6 37.9 1.0 O4' A:SAH303 4.6 42.7 1.0 C3' A:SAH303 4.6 37.3 1.0 N B:2MM1 4.8 51.6 1.0 O A:LEU192 4.9 44.9 1.0 SD A:SAH303 4.9 42.6 1.0 N9 A:SAH303 5.0 46.5 1.0

Iodine binding site 2 out of 2 in the Ribosomal Protein L11 Methyltransferase (Prma) in Complex with Dimethylated Ribosomal Protein L11 in Space Group P212121


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Ribosomal Protein L11 Methyltransferase (Prma) in Complex with Dimethylated Ribosomal Protein L11 in Space Group P212121 within 5.0Å range: probe atom residue distance (Å) B Occ H:I148 b:81.2 occ:0.80 N H:LYS2 3.2 60.2 1.0 CD2 G:TYR193 4.0 49.1 1.0 CA H:2MM1 4.2 53.3 1.0 CN1 H:2MM1 4.2 52.3 1.0 C8 G:SAH303 4.2 43.6 1.0 C5' G:SAH303 4.3 37.5 1.0 CG H:LYS2 4.4 62.2 1.0 CE2 G:TYR193 4.5 48.2 1.0 CA H:LYS2 4.5 62.1 1.0 C H:2MM1 4.6 51.5 1.0 O G:LEU192 4.7 47.0 1.0 N H:2MM1 4.7 53.0 1.0 CB H:LYS2 4.7 61.8 1.0 C2' G:SAH303 4.8 39.3 1.0 C G:LEU192 4.8 46.0 1.0 C3' G:SAH303 4.8 38.9 1.0 CA G:LEU192 4.8 44.8 1.0

H.Demirci, S.T.Gregory, A.E.Dahlberg, G.Jogl. Multiple-Site Trimethylation of Ribosomal Protein L11 By the Prma Methyltransferase. Structure V. 16 1059 2008.
ISSN: ISSN 0969-2126
PubMed: 18611379
DOI: 10.1016/J.STR.2008.03.016