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Iodine in PDB 3dp9: Crystal Structure of Vibrio Cholerae 5'-Methylthioadenosine/S-Adenosyl Homocysteine Nucleosidase (Mtan) Complexed with Butylthio-Dadme- Immucillin A

Enzymatic activity of Crystal Structure of Vibrio Cholerae 5'-Methylthioadenosine/S-Adenosyl Homocysteine Nucleosidase (Mtan) Complexed with Butylthio-Dadme- Immucillin A

All present enzymatic activity of Crystal Structure of Vibrio Cholerae 5'-Methylthioadenosine/S-Adenosyl Homocysteine Nucleosidase (Mtan) Complexed with Butylthio-Dadme- Immucillin A:
3.2.2.9;

Protein crystallography data

The structure of Crystal Structure of Vibrio Cholerae 5'-Methylthioadenosine/S-Adenosyl Homocysteine Nucleosidase (Mtan) Complexed with Butylthio-Dadme- Immucillin A, PDB code: 3dp9 was solved by M.Ho, J.A.Gutierrez, T.Crowder, A.Rinaldo-Matthis, S.C.Almo, V.L.Schramm, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.53 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 67.738, 54.332, 69.786, 90.00, 115.35, 90.00
R / Rfree (%) 20 / 26.4

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Vibrio Cholerae 5'-Methylthioadenosine/S-Adenosyl Homocysteine Nucleosidase (Mtan) Complexed with Butylthio-Dadme- Immucillin A (pdb code 3dp9). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Crystal Structure of Vibrio Cholerae 5'-Methylthioadenosine/S-Adenosyl Homocysteine Nucleosidase (Mtan) Complexed with Butylthio-Dadme- Immucillin A, PDB code: 3dp9:

Iodine binding site 1 out of 1 in 3dp9

Go back to Iodine Binding Sites List in 3dp9
Iodine binding site 1 out of 1 in the Crystal Structure of Vibrio Cholerae 5'-Methylthioadenosine/S-Adenosyl Homocysteine Nucleosidase (Mtan) Complexed with Butylthio-Dadme- Immucillin A


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Vibrio Cholerae 5'-Methylthioadenosine/S-Adenosyl Homocysteine Nucleosidase (Mtan) Complexed with Butylthio-Dadme- Immucillin A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:I300

b:67.2
occ:1.00
 O C:PRO137 3.0 53.0 1.0
CG2 C:THR139 3.3 49.8 1.0
C C:PRO137 4.1 52.9 1.0
N C:THR139 4.1 51.0 1.0
CB C:ASN138 4.3 51.6 1.0
C C:ASN138 4.3 51.3 1.0
C C:LEU136 4.3 54.5 1.0
CB C:LEU136 4.4 54.9 1.0
O C:LEU136 4.5 54.5 1.0
CA C:LEU136 4.5 54.9 1.0
N C:PRO137 4.5 54.0 1.0
CB C:THR139 4.6 50.6 1.0
CA C:ASN138 4.6 51.8 1.0
CD C:PRO137 4.7 53.9 1.0
CD2 C:LEU136 4.8 54.9 1.0
O C:ASN138 4.8 51.1 1.0
N C:ASN138 4.8 52.3 1.0
CA C:THR139 4.8 50.6 1.0

Reference:

J.A.Gutierrez, T.Crowder, A.Rinaldo-Matthis, M.C.Ho, S.C.Almo, V.L.Schramm. Transition State Analogs of 5'-Methylthioadenosine Nucleosidase Disrupt Quorum Sensing. Nat.Chem.Biol. V. 5 251 2009.
ISSN: ISSN 1552-4450
PubMed: 19270684
DOI: 10.1038/NCHEMBIO.153
Page generated: Fri Aug 8 14:07:02 2025

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