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Iodine in PDB 3fgv: Crystal Structure of A Putative Antibiotic Biosynthesis Monooxygenase (SPO2313) From Silicibacter Pomeroyi Dss-3 at 1.30 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Antibiotic Biosynthesis Monooxygenase (SPO2313) From Silicibacter Pomeroyi Dss-3 at 1.30 A Resolution, PDB code: 3fgv was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.12 / 1.30
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 78.760, 78.760, 69.810, 90.00, 90.00, 120.00
R / Rfree (%) 13 / 15

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of A Putative Antibiotic Biosynthesis Monooxygenase (SPO2313) From Silicibacter Pomeroyi Dss-3 at 1.30 A Resolution (pdb code 3fgv). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Crystal Structure of A Putative Antibiotic Biosynthesis Monooxygenase (SPO2313) From Silicibacter Pomeroyi Dss-3 at 1.30 A Resolution, PDB code: 3fgv:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 3fgv

Go back to Iodine Binding Sites List in 3fgv
Iodine binding site 1 out of 2 in the Crystal Structure of A Putative Antibiotic Biosynthesis Monooxygenase (SPO2313) From Silicibacter Pomeroyi Dss-3 at 1.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of A Putative Antibiotic Biosynthesis Monooxygenase (SPO2313) From Silicibacter Pomeroyi Dss-3 at 1.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I201

b:17.7
occ:0.60
O1 A:UNL202 1.2 12.6 1.0
O2 A:UNL203 3.3 19.1 1.0
OG1 A:THR41 3.6 9.0 1.0
CG2 A:VAL38 3.8 11.4 1.0
OH A:TYR76 3.9 9.6 1.0
C A:LEU37 3.9 9.6 1.0
N A:VAL38 3.9 9.6 1.0
O A:LEU37 4.0 9.9 1.0
CG1 A:VAL63 4.0 12.3 1.0
CA A:VAL38 4.0 8.9 1.0
O3 A:UNL204 4.0 20.4 1.0
CB A:LEU37 4.1 10.3 1.0
CE2 A:PHE86 4.2 10.6 1.0
NE2 A:HIS65 4.4 13.6 1.0
CB A:THR41 4.4 8.4 1.0
NH1 A:ARG80 4.5 11.8 1.0
CD2 A:HIS65 4.5 12.3 1.0
CB A:VAL38 4.6 9.2 1.0
O4 A:UNL205 4.6 22.6 1.0
CG2 A:VAL63 4.6 11.2 1.0
CA A:LEU37 4.7 9.9 1.0
CB A:VAL63 4.7 9.5 1.0
CG2 A:VAL34 4.8 15.8 1.0
CG2 A:THR41 4.9 9.1 1.0
O A:VAL34 5.0 11.7 1.0

Iodine binding site 2 out of 2 in 3fgv

Go back to Iodine Binding Sites List in 3fgv
Iodine binding site 2 out of 2 in the Crystal Structure of A Putative Antibiotic Biosynthesis Monooxygenase (SPO2313) From Silicibacter Pomeroyi Dss-3 at 1.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of A Putative Antibiotic Biosynthesis Monooxygenase (SPO2313) From Silicibacter Pomeroyi Dss-3 at 1.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I201

b:19.7
occ:0.60
O2 B:UNL203 1.2 7.2 1.0
O3 B:UNL204 2.2 18.3 1.0
O1 B:UNL202 2.9 21.4 1.0
O4 B:UNL205 3.6 17.7 1.0
O5 B:UNL206 3.7 19.5 1.0
OG1 B:THR41 3.9 8.2 1.0
OH B:TYR76 4.0 8.9 1.0
CB B:LEU37 4.0 8.7 1.0
CE2 B:PHE86 4.1 11.4 1.0
CG2 B:VAL38 4.2 10.3 1.0
C B:LEU37 4.2 8.4 1.0
NH1 B:ARG80 4.2 12.5 1.0
CG1 B:VAL63 4.2 10.6 1.0
O B:LEU37 4.2 8.6 1.0
N B:VAL38 4.3 8.1 1.0
CG2 B:VAL34 4.4 13.4 1.0
CA B:VAL38 4.5 8.0 1.0
CG2 B:VAL63 4.6 9.4 1.0
NE2 B:HIS65 4.6 12.8 1.0
O B:HOH186 4.7 16.8 1.0
CB B:VAL63 4.7 8.5 1.0
CD2 B:PHE86 4.7 10.7 1.0
CA B:LEU37 4.8 8.8 1.0
CB B:THR41 4.9 7.5 1.0
CD2 B:HIS65 5.0 11.1 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sun Dec 13 19:27:16 2020

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