Iodine in PDB 3gyv: Crystal Structure of Nucleosome Assembly Protein From Plasmodium Falciparum

The structure of Crystal Structure of Nucleosome Assembly Protein From Plasmodium Falciparum, PDB code: 3gyv was solved by M.Yogavel, J.Gill, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 3.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	76.680, 37.830, 79.310, 90.00, 99.80, 90.00
R / Rfree (%)	21.7 / 30.7

The binding sites of Iodine atom in the Crystal Structure of Nucleosome Assembly Protein From Plasmodium Falciparum (pdb code 3gyv). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 3 binding sites of Iodine where determined in the Crystal Structure of Nucleosome Assembly Protein From Plasmodium Falciparum, PDB code: 3gyv:
Jump to Iodine binding site number: 1; 2; 3;

Iodine binding site 1 out of 3 in the Crystal Structure of Nucleosome Assembly Protein From Plasmodium Falciparum


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Nucleosome Assembly Protein From Plasmodium Falciparum within 5.0Å range: probe atom residue distance (Å) B Occ A:I1 b:74.5 occ:0.70 CB A:ASN129 3.8 55.8 1.0 CD A:ARG83 3.8 55.7 1.0 CB A:TYR151 4.1 51.4 1.0 CB A:ASP130 4.2 59.0 1.0 ND2 A:ASN129 4.3 54.8 1.0 NE A:ARG83 4.4 59.2 1.0 CG1 A:VAL87 4.4 53.8 1.0 CG A:ASN129 4.4 55.6 1.0 CG A:ARG83 4.4 52.9 1.0 CG A:TYR151 4.4 51.7 1.0 CG2 A:VAL87 4.4 54.1 1.0 CD1 A:TYR151 4.8 53.4 1.0 CB A:VAL87 4.8 53.9 1.0 N A:ASP130 4.8 57.9 1.0 C A:ASN129 4.9 56.9 1.0 CA A:ASN129 5.0 55.9 1.0 CD2 A:TYR151 5.0 51.9 1.0

Iodine binding site 2 out of 3 in the Crystal Structure of Nucleosome Assembly Protein From Plasmodium Falciparum


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Nucleosome Assembly Protein From Plasmodium Falciparum within 5.0Å range: probe atom residue distance (Å) B Occ A:I2 b:75.9 occ:0.80 CA A:HIS232 3.9 71.0 1.0 N A:LYS233 3.9 72.3 1.0 NZ A:LYS233 4.0 75.2 1.0 CE A:LYS233 4.2 74.8 1.0 O A:SER231 4.3 68.7 1.0 ND1 A:HIS232 4.3 74.0 1.0 C A:HIS232 4.3 71.4 1.0 CB A:HIS232 4.4 71.2 1.0 CG A:LYS233 4.6 73.8 1.0 CD2 A:LEU251 4.6 99.5 1.0 CD A:LYS233 4.6 74.1 1.0 CG A:HIS232 4.8 72.6 1.0 CB A:LYS233 4.8 73.4 1.0 N A:HIS232 4.9 69.8 1.0 C A:SER231 5.0 68.6 1.0

Iodine binding site 3 out of 3 in the Crystal Structure of Nucleosome Assembly Protein From Plasmodium Falciparum


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of Nucleosome Assembly Protein From Plasmodium Falciparum within 5.0Å range: probe atom residue distance (Å) B Occ A:I3 b:76.4 occ:0.50 NZ A:LYS44 3.2 61.0 1.0 NZ A:LYS47 3.3 51.4 1.0 CG A:LYS44 3.5 59.6 1.0 CE A:LYS44 3.9 62.0 1.0 CE A:LYS47 3.9 51.3 1.0 CD A:LYS44 4.0 61.6 1.0 O A:LYS40 4.1 53.0 1.0 CD2 A:LEU43 4.3 55.8 1.0 N A:LYS44 4.3 56.2 1.0 CD A:LYS47 4.4 54.4 1.0 CA A:LYS44 4.4 57.0 1.0 CG A:LEU43 4.5 55.4 1.0 CB A:LEU43 4.6 55.0 1.0 CB A:LYS44 4.6 57.3 1.0 C A:LEU43 4.7 55.6 1.0

M.Yogavel, J.Gill, A.Sharma. Iodide-Sad, Sir and Siras Phasing For Structure Solution of A Nucleosome Assembly Protein. Acta Crystallogr.,Sect.D V. 65 618 2009.
ISSN: ISSN 0907-4449
PubMed: 19465776
DOI: 10.1107/S0907444909013171