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Iodine in PDB 3k0x: Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe

Protein crystallography data

The structure of Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe, PDB code: 3k0x was solved by A.D.Gelinas, F.E.Reyes, R.T.Batey, D.S.Wuttke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.70
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 64.304, 64.304, 66.242, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 23.8

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe (pdb code 3k0x). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 8 binding sites of Iodine where determined in the Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe, PDB code: 3k0x:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iodine binding site 1 out of 8 in 3k0x

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Iodine binding site 1 out of 8 in the Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I201

b:2.8
occ:0.44
 O A:HOH155 3.3 17.1 1.0
CD A:PRO89 4.2 11.0 1.0
CG A:PRO89 4.4 13.1 1.0
CD1 A:LEU88 4.6 18.1 1.0
CB A:LEU88 4.7 13.2 1.0
O A:HOH185 5.0 31.5 1.0

Iodine binding site 2 out of 8 in 3k0x

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Iodine binding site 2 out of 8 in the Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I202

b:32.5
occ:0.39
 NZ A:LYS59 3.0 50.2 1.0
N A:TYR30 3.4 18.4 1.0
O A:HOH136 3.7 42.2 1.0
CA A:SER29 3.9 15.7 1.0
O A:TYR30 3.9 22.2 1.0
CE A:LYS59 3.9 47.5 1.0
O A:HOH148 4.1 44.7 1.0
C A:SER29 4.2 15.6 1.0
O A:HOH137 4.2 75.0 1.0
CB A:SER29 4.3 16.7 1.0
O A:HOH145 4.3 53.5 1.0
O A:HOH229 4.3 39.8 1.0
C A:TYR30 4.4 21.1 1.0
CA A:TYR30 4.4 19.5 1.0
CB A:LYS59 4.5 44.7 1.0
CG A:LYS59 4.6 44.8 1.0
CB A:TYR30 4.8 20.9 1.0
CD A:LYS59 4.8 46.8 1.0
O A:GLN28 4.9 13.7 1.0

Iodine binding site 3 out of 8 in 3k0x

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Iodine binding site 3 out of 8 in the Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I203

b:26.1
occ:0.71
 O A:HOH180 3.5 27.1 1.0
N A:ILE80 3.6 22.3 1.0
CA A:LEU79 3.9 18.4 1.0
CG1 A:ILE80 4.0 16.9 1.0
CB A:ILE80 4.1 17.4 1.0
C A:LEU79 4.1 18.6 1.0
CD1 A:ILE80 4.1 24.2 1.0
CG1 A:VAL55 4.2 20.0 1.0
CD1 A:LEU79 4.4 30.1 1.0
O A:LEU78 4.4 19.5 1.0
CA A:ILE80 4.5 23.5 1.0
N A:LEU79 4.5 18.4 1.0
CB A:VAL55 4.6 20.0 1.0
CG1 A:VAL77 4.7 12.5 1.0
CG2 A:VAL55 4.8 20.0 1.0
C A:LEU78 4.8 18.8 1.0
CD1 A:LEU52 4.8 33.3 1.0
O A:ILE80 4.9 26.3 1.0
CB A:LEU52 4.9 32.5 1.0

Iodine binding site 4 out of 8 in 3k0x

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Iodine binding site 4 out of 8 in the Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I204

b:25.0
occ:0.59
 O A:HOH196 3.1 27.9 1.0
O A:HOH114 3.1 53.0 1.0
N A:TRP62 3.6 15.2 1.0
O A:HOH239 3.7 36.4 1.0
CB A:GLU61 3.8 25.4 1.0
CA A:GLU61 3.8 17.7 1.0
CA A:VAL84 4.0 18.7 1.0
C A:GLU61 4.3 14.7 1.0
CD1 A:TRP62 4.4 18.7 1.0
CB A:VAL84 4.5 19.3 1.0
CB A:TRP62 4.5 14.8 1.0
CG2 A:VAL84 4.5 18.1 1.0
CA A:TRP62 4.6 14.9 1.0
N A:VAL84 4.6 18.4 1.0
N A:GLY85 4.6 15.5 1.0
O A:HOH244 4.7 40.9 1.0
O A:ALA83 4.8 17.5 1.0
O A:TRP62 4.8 17.5 1.0
O A:HIS60 4.8 19.4 1.0
CG A:TRP62 4.9 16.2 1.0
C A:VAL84 4.9 17.4 1.0
O A:HOH191 4.9 34.0 1.0
CG A:GLU61 5.0 28.9 1.0
C A:ALA83 5.0 17.2 1.0

Iodine binding site 5 out of 8 in 3k0x

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Iodine binding site 5 out of 8 in the Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I205

b:21.9
occ:0.52
 O A:HOH237 3.0 38.9 1.0
OD1 A:ASN87 4.0 13.3 1.0
CB A:PRO89 4.1 12.0 1.0
CG A:ARG90 4.2 15.2 1.0
CG A:PRO89 4.3 13.1 1.0
ND2 A:ASN87 4.4 12.7 1.0
CG A:ASN87 4.6 12.3 1.0
CD A:PRO89 4.8 11.0 1.0
N A:ARG90 5.0 11.0 1.0

Iodine binding site 6 out of 8 in 3k0x

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Iodine binding site 6 out of 8 in the Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I206

b:21.0
occ:0.43
 O A:HOH214 3.0 38.5 1.0
ND2 A:ASN13 3.4 21.3 1.0
CA A:GLY73 4.0 17.3 1.0
N A:GLY73 4.2 19.4 1.0
CG A:ASN13 4.4 21.1 1.0
OD1 A:ASN13 4.6 23.0 1.0
O A:HOH233 4.7 30.5 1.0
C A:ASP72 4.7 19.9 1.0
CB A:ASP72 4.9 27.1 1.0
O A:HOH228 4.9 35.8 1.0

Iodine binding site 7 out of 8 in 3k0x

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Iodine binding site 7 out of 8 in the Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I207

b:29.2
occ:0.30
 OE1 A:GLN93 2.3 42.7 1.0
CD A:GLN93 3.1 38.2 1.0
NH2 A:ARG90 3.4 30.5 1.0
NE2 A:GLN93 3.6 41.9 1.0
NE A:ARG90 3.8 28.1 1.0
CZ A:ARG90 4.0 26.7 1.0
CG A:GLN93 4.2 34.1 1.0
O A:HOH237 4.3 38.9 1.0
CB A:GLN93 4.3 27.7 1.0
O A:HOH108 4.3 41.3 1.0
CD A:ARG90 4.8 20.8 1.0
O A:HOH122 4.9 40.0 1.0

Iodine binding site 8 out of 8 in 3k0x

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Iodine binding site 8 out of 8 in the Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of Telomere Capping Protein TEN1 From Saccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I208

b:37.4
occ:0.33
 NE2 A:GLN19 2.9 44.2 1.0
N A:LYS16 3.4 21.1 1.0
O A:HOH215 3.6 39.9 1.0
CA A:CYS15 3.9 18.2 1.0
CD A:GLN19 4.0 42.9 1.0
CB A:CYS15 4.1 24.2 1.0
C A:CYS15 4.1 17.9 1.0
CG A:GLN19 4.2 39.6 1.0
CB A:LYS16 4.2 29.4 1.0
CA A:LYS16 4.5 22.5 1.0
CB A:GLN19 4.5 36.4 1.0
SG A:CYS15 4.8 24.7 1.0
O A:ASP14 4.9 20.9 1.0

Reference:

A.D.Gelinas, M.Paschini, F.E.Reyes, A.Heroux, R.T.Batey, V.Lundblad, D.S.Wuttke. Telomere Capping Proteins Are Structurally Related to Rpa with An Additional Telomere-Specific Domain. Proc.Natl.Acad.Sci.Usa V. 106 19298 2009.
ISSN: ISSN 0027-8424
PubMed: 19884503
DOI: 10.1073/PNAS.0909203106
Page generated: Sun Aug 11 15:25:55 2024

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