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Iodine in PDB 3mcb: Crystal Structure of Nac Domains of Human Nascent Polypeptide- Associated Complex (Nac)

Protein crystallography data

The structure of Crystal Structure of Nac Domains of Human Nascent Polypeptide- Associated Complex (Nac), PDB code: 3mcb was solved by L.F.Wang, W.C.Zhang, L.Wang, X.J.C.Zhang, X.M.Li, Z.Rao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.37 / 1.90
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 59.794, 59.794, 156.763, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 24.7

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Nac Domains of Human Nascent Polypeptide- Associated Complex (Nac) (pdb code 3mcb). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 3 binding sites of Iodine where determined in the Crystal Structure of Nac Domains of Human Nascent Polypeptide- Associated Complex (Nac), PDB code: 3mcb:
Jump to Iodine binding site number: 1; 2; 3;

Iodine binding site 1 out of 3 in 3mcb

Go back to Iodine Binding Sites List in 3mcb
Iodine binding site 1 out of 3 in the Crystal Structure of Nac Domains of Human Nascent Polypeptide- Associated Complex (Nac)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Nac Domains of Human Nascent Polypeptide- Associated Complex (Nac) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I1

b:38.6
occ:0.59
OG1 B:THR87 3.3 49.5 1.0
OG1 B:THR89 3.4 46.6 1.0
CG B:GLN80 3.8 53.1 1.0
NE2 B:GLN80 3.9 65.7 1.0
O B:GLN80 4.0 38.4 1.0
N B:THR89 4.1 34.5 1.0
O B:THR87 4.2 40.0 1.0
CB B:THR87 4.2 40.8 1.0
C B:GLN80 4.2 36.3 1.0
N B:SER82 4.2 31.2 1.0
C B:ALA81 4.2 35.3 1.0
CB B:THR89 4.3 41.8 1.0
N B:ALA81 4.3 35.7 1.0
C B:THR87 4.3 39.6 1.0
CA B:ALA81 4.4 38.0 1.0
C B:PHE88 4.4 33.7 1.0
CD B:GLN80 4.4 66.9 1.0
CB B:SER82 4.5 36.0 1.0
CA B:PHE88 4.5 32.0 1.0
CB B:GLN80 4.6 38.8 1.0
N B:PHE88 4.6 36.4 1.0
O B:ALA81 4.7 40.0 1.0
CA B:THR89 4.8 36.5 1.0
CA B:THR87 5.0 36.0 1.0
CA B:SER82 5.0 33.4 1.0

Iodine binding site 2 out of 3 in 3mcb

Go back to Iodine Binding Sites List in 3mcb
Iodine binding site 2 out of 3 in the Crystal Structure of Nac Domains of Human Nascent Polypeptide- Associated Complex (Nac)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Nac Domains of Human Nascent Polypeptide- Associated Complex (Nac) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I2

b:27.9
occ:0.19
O B:HOH9 3.0 57.6 1.0
O B:HOH38 3.1 63.0 1.0
N B:LEU83 3.2 36.2 1.0
ND2 B:ASN54 3.4 75.3 1.0
O B:ALA81 3.8 40.0 1.0
CA B:SER82 3.8 33.4 1.0
CG B:LEU83 3.9 38.2 1.0
CB B:LEU83 3.9 32.5 1.0
C B:SER82 4.0 36.4 1.0
CA B:LEU83 4.2 36.4 1.0
C B:ALA81 4.2 35.3 1.0
N B:SER82 4.3 31.2 1.0
CG B:ASN54 4.6 76.5 1.0
CD1 B:LEU83 4.6 37.5 1.0
O B:HOH46 4.7 59.1 1.0
O B:HOH21 4.9 56.8 1.0
N B:ALA84 4.9 40.9 1.0
CB B:ALA81 4.9 39.4 1.0
CB B:SER82 5.0 36.0 1.0
CD2 B:LEU83 5.0 33.8 1.0

Iodine binding site 3 out of 3 in 3mcb

Go back to Iodine Binding Sites List in 3mcb
Iodine binding site 3 out of 3 in the Crystal Structure of Nac Domains of Human Nascent Polypeptide- Associated Complex (Nac)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of Nac Domains of Human Nascent Polypeptide- Associated Complex (Nac) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I3

b:56.6
occ:0.13
OE1 B:GLN68 3.2 74.8 1.0
CD B:GLN68 4.2 71.7 1.0
O B:HOH116 4.4 76.2 1.0
NE2 B:GLN68 4.4 78.3 1.0

Reference:

L.F.Wang, W.C.Zhang, L.Wang, X.J.C.Zhang, X.M.Li, Z.Rao. Crystal Structures of Nac Domains of Human Nascent Polypeptide-Associated Complex (Nac) and Its Alphanac Subunit Protein Cell V. 1 406 2010.
ISSN: ISSN 1674-800X
PubMed: 21203952
DOI: 10.1007/S13238-010-0049-3
Page generated: Sun Dec 13 19:28:22 2020

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