Iodine in PDB 3mce: Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac)

The structure of Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac), PDB code: 3mce was solved by L.F.Wang, W.C.Zhang, L.Wang, X.J.C.Zhang, X.M.Li, Z.Rao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.90 / 2.40
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	54.592, 59.605, 69.130, 90.00, 90.00, 90.00
R / Rfree (%)	24.7 / 27.7

The binding sites of Iodine atom in the Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac) (pdb code 3mce). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 8 binding sites of Iodine where determined in the Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac), PDB code: 3mce:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iodine binding site 1 out of 8 in the Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac) within 5.0Å range: probe atom residue distance (Å) B Occ A:I3 b:18.3 occ:0.35 O A:HOH23 3.3 51.4 1.0 C A:SER77 3.5 73.0 1.0 N A:PRO78 3.6 56.7 1.0 N A:GLY73 3.6 56.6 1.0 N A:SER77 3.7 35.4 1.0 CA A:SER77 3.8 30.0 1.0 O A:SER77 3.8 39.2 1.0 CD A:PRO78 4.0 31.1 1.0 CA A:PRO78 4.1 39.4 1.0 NZ A:LYS82 4.2 34.1 1.0 C A:GLY76 4.2 56.2 1.0 CG A:PRO78 4.2 59.6 1.0 CE A:LYS82 4.4 30.7 1.0 O C:HOH16 4.5 44.6 1.0 O A:GLY76 4.6 35.8 1.0 CB A:PRO78 4.7 31.7 1.0 O A:HOH5 4.8 40.9 1.0 O A:GLY73 4.8 58.3 1.0 O A:HOH6 4.9 30.8 1.0 CA A:GLY73 4.9 35.2 1.0

Iodine binding site 2 out of 8 in the Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac) within 5.0Å range: probe atom residue distance (Å) B Occ A:I7 b:19.9 occ:0.17 CA A:GLY90 3.6 56.1 1.0 CE B:LYS98 4.0 58.4 1.0 N A:GLY90 4.1 57.5 1.0 CG B:LYS98 4.1 50.5 1.0 CB B:SER99 4.4 47.4 1.0 CD B:LYS98 4.5 54.8 1.0 CG2 A:THR89 4.7 70.1 1.0 C A:GLY90 4.8 56.5 1.0 C A:THR89 4.9 62.0 1.0

Iodine binding site 3 out of 8 in the Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac) within 5.0Å range: probe atom residue distance (Å) B Occ B:I1 b:20.5 occ:0.81 CG B:ARG93 3.3 43.6 1.0 OG1 B:THR95 3.4 39.0 1.0 OG1 A:THR95 3.5 41.6 1.0 NH2 A:ARG97 3.6 61.5 1.0 O B:ARG93 3.7 44.0 1.0 CZ A:ARG97 3.7 63.7 1.0 CB B:THR95 3.7 39.1 1.0 CB A:THR95 3.8 40.4 1.0 O B:HOH15 3.9 51.9 1.0 CB A:ARG97 3.9 56.3 1.0 NE A:ARG97 3.9 62.6 1.0 N B:THR95 3.9 40.5 1.0 O A:THR95 4.0 39.1 1.0 CD B:ARG93 4.1 43.3 1.0 CD1 A:LEU103 4.1 47.5 1.0 C B:ARG93 4.2 42.9 1.0 NH1 A:ARG97 4.2 66.1 1.0 C A:THR95 4.3 40.1 1.0 N A:ARG97 4.3 52.6 1.0 CB B:ARG93 4.4 43.1 1.0 NE B:ARG93 4.4 42.8 1.0 CA B:THR95 4.5 39.2 1.0 C B:VAL94 4.5 41.6 1.0 CA B:VAL94 4.6 41.4 1.0 CA A:THR95 4.7 40.0 1.0 N B:VAL94 4.7 41.5 1.0 CD A:ARG97 4.7 61.2 1.0 N A:ILE96 4.8 42.7 1.0 CA A:ARG97 4.8 55.8 1.0 C A:ILE96 4.9 48.2 1.0 CG2 A:THR95 4.9 41.1 1.0 CA B:ARG93 4.9 41.8 1.0 CG2 B:THR95 4.9 40.6 1.0 CG A:ARG97 4.9 58.4 1.0 CA A:ILE96 5.0 44.5 1.0

Iodine binding site 4 out of 8 in the Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac) within 5.0Å range: probe atom residue distance (Å) B Occ B:I5 b:16.2 occ:0.26 N B:ASN101 3.5 45.5 1.0 OG B:SER99 3.5 46.1 1.0 CB B:SER99 3.8 47.4 1.0 CB B:ASN101 3.8 44.1 1.0 ND2 B:ASN101 3.9 47.5 1.0 CD1 B:ILE102 3.9 37.4 1.0 N B:LYS100 4.0 46.9 1.0 CA B:ASN101 4.1 43.9 1.0 OG B:SER132 4.1 48.9 1.0 CG1 B:ILE102 4.3 36.7 1.0 CG B:ASN101 4.3 47.8 1.0 N B:ILE102 4.4 39.0 1.0 C B:LYS100 4.5 45.6 1.0 C B:ASN101 4.5 40.5 1.0 CA B:LYS100 4.6 46.2 1.0 CB B:LYS100 4.7 47.8 1.0 O B:LYS98 4.7 42.0 1.0 C B:SER99 4.8 47.8 1.0 CA B:SER99 4.9 47.1 1.0

Iodine binding site 5 out of 8 in the Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac) within 5.0Å range: probe atom residue distance (Å) B Occ B:I6 b:18.8 occ:0.12 OG1 A:THR95 3.0 41.6 1.0 CG2 B:THR95 3.1 40.6 1.0 O B:THR95 3.5 40.1 1.0 CG A:ARG93 3.5 44.1 1.0 CG B:ARG97 3.5 37.6 1.0 CB B:THR95 3.7 39.1 1.0 CD B:ARG97 3.8 36.8 1.0 C B:THR95 3.9 38.7 1.0 CG2 A:THR95 4.0 41.1 1.0 CD A:ARG93 4.0 46.5 1.0 CB A:THR95 4.1 40.4 1.0 O A:ARG93 4.1 42.5 1.0 N A:THR95 4.2 40.8 1.0 NE A:ARG93 4.2 48.6 1.0 CB A:ARG93 4.2 42.2 1.0 C A:ARG93 4.3 42.4 1.0 CB B:ARG97 4.3 38.4 1.0 CA A:VAL94 4.4 42.1 1.0 N B:ARG97 4.4 40.1 1.0 C A:VAL94 4.4 40.6 1.0 N A:VAL94 4.4 42.2 1.0 CA B:THR95 4.5 39.2 1.0 N B:ILE96 4.5 37.0 1.0 CA B:ILE96 4.7 38.6 1.0 C B:ILE96 4.8 38.1 1.0 CA A:THR95 4.8 40.0 1.0 OG1 B:THR95 4.9 39.0 1.0 CA A:ARG93 4.9 43.0 1.0 CA B:ARG97 5.0 40.8 1.0

Iodine binding site 6 out of 8 in the Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac) within 5.0Å range: probe atom residue distance (Å) B Occ C:I4 b:39.1 occ:0.30 CG2 C:THR95 3.1 41.4 1.0 NH1 C:ARG97 3.4 67.3 1.0 OG1 D:THR95 3.6 45.6 1.0 NE D:ARG93 4.0 66.5 1.0 CB C:THR95 4.0 39.7 1.0 CG C:ARG97 4.3 58.5 1.0 CG2 D:THR95 4.3 41.8 1.0 CG D:ARG93 4.3 54.0 1.0 O C:THR95 4.5 39.0 1.0 CB D:THR95 4.6 42.7 1.0 CD D:ARG93 4.6 59.9 1.0 CZ C:ARG97 4.7 66.3 1.0 O D:ARG93 4.7 41.7 1.0 CB C:ARG97 4.8 54.5 1.0 C C:THR95 4.8 37.4 1.0 OG1 C:THR95 4.9 40.6 1.0 NH2 D:ARG93 4.9 71.6 1.0 N D:THR95 4.9 39.1 1.0 CB D:ARG93 4.9 49.4 1.0 CZ D:ARG93 4.9 70.5 1.0 CD1 C:LEU103 4.9 51.2 1.0

Iodine binding site 7 out of 8 in the Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac) within 5.0Å range: probe atom residue distance (Å) B Occ C:I8 b:9.1 occ:0.16 N C:ASN101 3.4 69.8 1.0 N C:LYS100 3.6 75.0 1.0 CB C:SER99 3.6 74.2 1.0 CD1 C:ILE102 3.8 64.8 1.0 CB C:LYS100 4.0 77.4 1.0 CA C:LYS100 4.1 74.5 1.0 CB C:ASN101 4.2 68.5 1.0 CA C:ASN101 4.2 68.5 1.0 C C:LYS100 4.3 71.5 1.0 CG1 C:ILE102 4.4 62.2 1.0 O C:LYS98 4.5 56.6 1.0 OG C:SER99 4.5 76.3 1.0 N C:ILE102 4.5 64.1 1.0 C C:SER99 4.6 73.9 1.0 ND2 C:ASN101 4.6 68.7 1.0 C C:ASN101 4.7 66.3 1.0 CA C:SER99 4.7 71.3 1.0 CG C:ASN101 5.0 67.9 1.0

Iodine binding site 8 out of 8 in the Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of the Nac Domain of Alpha Subunit of Nascent Polypeptide-Associated Complex(Nac) within 5.0Å range: probe atom residue distance (Å) B Occ D:I2 b:26.9 occ:0.50 OG1 D:THR95 3.4 45.6 1.0 OG1 C:THR95 3.7 40.6 1.0 O C:ARG93 3.8 46.4 1.0 NE D:ARG97 3.8 79.3 1.0 CG C:ARG93 3.8 44.5 1.0 O D:THR95 3.9 35.5 1.0 NE C:ARG93 4.0 48.7 1.0 CB D:THR95 4.0 42.7 1.0 CB C:THR95 4.0 39.7 1.0 CB D:ARG97 4.0 67.5 1.0 C D:THR95 4.1 38.8 1.0 CB C:ARG93 4.2 45.2 1.0 CD1 D:LEU103 4.2 47.7 1.0 C C:ARG93 4.2 45.5 1.0 N C:THR95 4.3 40.6 1.0 N D:ARG97 4.3 57.0 1.0 CD C:ARG93 4.4 47.0 1.0 N D:ILE96 4.5 40.6 1.0 CD D:ARG97 4.5 76.0 1.0 NH2 D:ARG97 4.5 82.4 1.0 CZ D:ARG97 4.7 81.9 1.0 C C:VAL94 4.7 40.8 1.0 CA D:THR95 4.7 40.4 1.0 CA C:VAL94 4.7 38.6 1.0 CG D:ARG97 4.7 72.1 1.0 N C:VAL94 4.7 42.5 1.0 C D:ILE96 4.7 52.1 1.0 CA D:ILE96 4.8 45.2 1.0 CA D:ARG97 4.8 62.6 1.0 CA C:THR95 4.8 38.6 1.0 CZ C:ARG93 4.9 51.0 1.0 CA C:ARG93 4.9 45.6 1.0 NH2 C:ARG93 5.0 51.5 1.0

L.F.Wang, W.C.Zhang, L.Wang, X.J.C.Zhang, X.M.Li, Z.Rao. Crystal Structures of Nac Domains of Human Nascent Polypeptide-Associated Complex (Nac) and Its Alphanac Subunit Protein Cell V. 1 406 2010.
ISSN: ISSN 1674-800X
PubMed: 21203952
DOI: 10.1007/S13238-010-0049-3