Iodine in PDB 3qqm: Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution

The structure of Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution, PDB code: 3qqm was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.68 / 2.30
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	116.178, 215.574, 81.875, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 24.1

The structure of Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

14 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 33;

Binding sites:

The binding sites of Iodine atom in the Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution (pdb code 3qqm). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 33 binding sites of Iodine where determined in the Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution, PDB code: 3qqm:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 33 in the Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:I221 b:28.6 occ:1.00 NH2 A:ARG212 3.4 24.4 1.0 N A:GLU90 3.6 24.5 1.0 NH2 B:ARG67 3.8 32.5 1.0 CD A:ARG71 3.9 24.3 1.0 CD1 A:TYR89 4.0 21.8 1.0 CA A:TYR89 4.2 21.9 1.0 CB A:ARG71 4.2 19.0 1.0 CZ A:ARG212 4.3 22.7 1.0 CB A:GLU90 4.3 26.9 1.0 O A:PRO88 4.4 20.6 1.0 C A:TYR89 4.4 23.4 1.0 CA A:GLU90 4.4 26.1 1.0 O A:GLU90 4.5 26.1 1.0 CD2 A:LEU211 4.5 13.9 1.0 CG A:ARG71 4.6 20.7 1.0 CE1 A:TYR89 4.6 21.3 1.0 CG A:GLU90 4.6 29.1 1.0 NH1 A:ARG212 4.7 23.4 1.0 C A:GLU90 4.8 25.9 1.0 CZ B:ARG67 4.8 32.0 1.0 OE1 A:GLU90 4.9 34.4 1.0 CG A:TYR89 4.9 21.5 1.0 NE A:ARG71 5.0 28.1 1.0 CB A:TYR89 5.0 21.5 1.0

Iodine binding site 2 out of 33 in the Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:I225 b:27.7 occ:0.75 I A:IOD225 0.0 27.7 0.8 I A:IOD225 3.5 33.1 0.2 N A:LEU214 3.6 16.8 1.0 CA A:GLY213 4.0 16.3 1.0 C A:GLY213 4.3 16.5 1.0 CG A:LEU214 4.3 17.2 1.0 CB A:LEU214 4.4 17.7 1.0 CA A:LEU214 4.6 17.0 1.0 CD1 A:LEU214 4.6 17.4 1.0 CD1 A:LEU179 4.6 13.2 1.0 CL A:CL260 4.7 55.9 1.0

Iodine binding site 3 out of 33 in the Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:I225 b:33.1 occ:0.25 I A:IOD225 0.0 33.1 0.2 I A:IOD225 3.5 27.7 0.8 NH2 A:ARG31 3.6 18.4 1.0 NH1 A:ARG31 3.6 17.3 1.0 CA A:GLY213 3.9 16.3 1.0 CD2 A:LEU30 4.0 21.2 1.0 CZ A:ARG31 4.1 18.3 1.0 NH2 A:ARG22 4.3 19.9 1.0 N A:GLY213 4.6 16.0 1.0 CD1 A:LEU179 4.9 13.2 1.0

Iodine binding site 4 out of 33 in the Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:I234 b:35.6 occ:0.65 O A:HOH1082 2.4 24.8 1.0 CD1 A:ILE153 3.3 17.8 1.0 NE A:ARG212 3.4 21.1 1.0 ND2 A:ASN209 3.7 13.2 1.0 CD A:ARG212 4.0 19.9 1.0 CD2 A:LEU211 4.3 13.9 1.0 CZ A:ARG212 4.4 22.7 1.0 CG A:ARG212 4.4 18.1 1.0 CG1 A:ILE153 4.4 15.9 1.0 O A:HOH867 4.4 25.1 1.0 NH2 A:ARG212 4.4 24.4 1.0 CG A:ASN209 4.7 13.5 1.0 CH2 A:TRP98 4.8 19.0 1.0 OD1 A:ASN209 4.9 14.2 1.0

Iodine binding site 5 out of 33 in the Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:I236 b:42.8 occ:0.65 O B:HOH1084 3.0 17.3 1.0 NE B:ARG212 3.3 22.0 1.0 CD1 B:ILE153 3.4 16.5 1.0 ND2 B:ASN209 3.8 13.4 1.0 CD B:ARG212 3.8 20.6 1.0 CD2 B:LEU211 4.2 14.6 1.0 CZ B:ARG212 4.3 23.6 1.0 CH2 B:TRP98 4.3 19.3 1.0 CG B:ARG212 4.4 18.3 1.0 NH2 B:ARG212 4.5 23.7 1.0 CG1 B:ILE153 4.6 16.5 1.0 CG B:ASN209 4.8 14.8 1.0 OD1 B:ASN209 4.8 15.1 1.0 CZ2 B:TRP98 4.9 19.0 1.0

Iodine binding site 6 out of 33 in the Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:I240 b:30.6 occ:0.50 N B:LEU214 3.6 18.0 1.0 O B:HOH771 3.7 22.2 1.0 CG B:LEU214 3.9 19.1 1.0 CA B:GLY213 4.1 17.6 1.0 CB B:LEU214 4.1 18.7 1.0 CD1 B:LEU214 4.2 19.5 1.0 C B:GLY213 4.3 17.5 1.0 NH1 B:ARG188 4.3 27.8 1.0 CD1 B:LEU179 4.4 17.0 1.0 CA B:LEU214 4.5 18.2 1.0

Iodine binding site 7 out of 33 in the Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:I242 b:30.5 occ:0.45 CD1 B:LEU123 3.2 28.4 1.0 ND2 B:ASN111 3.4 24.5 1.0 N B:ASP108 3.5 23.4 1.0 CB B:ASP108 3.8 25.6 1.0 CB B:ASN111 4.1 26.2 1.0 CA B:LEU107 4.2 22.4 1.0 CG B:ASN111 4.3 26.2 1.0 CA B:ASP108 4.3 24.4 1.0 C B:LEU107 4.3 22.9 1.0 CD2 B:LEU107 4.5 21.9 1.0 CD2 B:LEU114 4.5 20.1 1.0 CG B:LEU123 4.6 26.8 1.0 O B:ASP108 4.6 24.6 1.0 CB B:LEU107 4.7 21.6 1.0 CD1 B:LEU114 4.8 20.4 1.0 CG B:LEU114 5.0 21.2 1.0 C B:ASP108 5.0 24.2 1.0 O B:ARG106 5.0 23.9 1.0 CB B:LEU123 5.0 25.1 1.0 CD2 B:LEU123 5.0 27.2 1.0

Iodine binding site 8 out of 33 in the Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:I246 b:55.6 occ:0.30 O B:ALA56 3.9 24.4 1.0 CB B:ALA56 3.9 25.9 1.0 CA B:ALA56 4.0 24.9 1.0 CZ B:PHE32 4.0 23.5 1.0 CE2 B:PHE32 4.3 24.7 1.0 O B:HOH904 4.4 34.4 1.0 CB B:LEU59 4.4 19.2 1.0 C B:ALA56 4.4 24.6 1.0 CE2 B:PHE29 4.5 21.4 1.0 CD1 B:LEU59 4.6 18.2 1.0 N B:SER60 4.8 19.7 1.0

Iodine binding site 9 out of 33 in the Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:I226 b:38.8 occ:0.70 I C:IOD226 0.0 38.8 0.7 I C:IOD226 3.5 32.8 0.3 N C:LEU214 3.7 17.3 1.0 CG C:LEU214 4.1 17.8 1.0 CD1 C:LEU214 4.1 18.6 1.0 CA C:GLY213 4.1 17.1 1.0 CB C:LEU214 4.2 18.0 1.0 CD1 C:LEU179 4.4 16.3 1.0 C C:GLY213 4.4 17.1 1.0 NH1 C:ARG188 4.6 26.2 1.0 CA C:LEU214 4.6 17.6 1.0

Iodine binding site 10 out of 33 in the Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Crystal Structure of A Putative Amino-Acid Aminotransferase (NP_104211.1) From Mesorhizobium Loti at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:I226 b:32.8 occ:0.30 I C:IOD226 0.0 32.8 0.3 I C:IOD226 3.5 38.8 0.7 NH2 C:ARG31 3.6 21.4 1.0 NH1 C:ARG31 3.6 21.1 1.0 CA C:GLY213 4.0 17.1 1.0 CZ C:ARG31 4.0 21.1 1.0 CD2 C:LEU30 4.1 24.1 1.0 NH2 C:ARG22 4.3 21.2 1.0 N C:GLY213 4.7 16.9 1.0 CD1 C:LEU179 4.8 16.3 1.0 CZ C:ARG22 5.0 21.2 1.0 NH1 C:ARG22 5.0 21.6 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.