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Iodine in PDB 3ufm: Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein

Enzymatic activity of Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein

All present enzymatic activity of Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein:
3.2.2.27;

Protein crystallography data

The structure of Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein, PDB code: 3ufm was solved by N.P.George, J.L.Keck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.95
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 78.343, 92.640, 66.012, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 20.8

Iodine Binding Sites:

The binding sites of Iodine atom in the Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein (pdb code 3ufm). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein, PDB code: 3ufm:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 3ufm

Go back to Iodine Binding Sites List in 3ufm
Iodine binding site 1 out of 2 in the Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I256

b:36.5
occ:1.00
 O A:HOH349 3.5 36.2 1.0
N A:TYR39 3.7 36.7 1.0
CD A:PRO38 3.8 38.8 1.0
CB A:TYR39 4.1 35.7 1.0
CD2 A:TYR39 4.1 34.8 1.0
CB A:PRO38 4.1 35.1 1.0
N A:PRO38 4.2 36.7 1.0
CB A:ALA37 4.2 38.4 1.0
CG A:PRO38 4.2 38.3 1.0
CA A:TYR39 4.5 37.3 1.0
CA A:PRO38 4.5 35.6 1.0
C A:PRO38 4.6 36.5 1.0
CG A:TYR39 4.6 34.8 1.0
C A:ALA37 4.7 38.0 1.0
CA A:ALA37 4.8 38.2 1.0

Iodine binding site 2 out of 2 in 3ufm

Go back to Iodine Binding Sites List in 3ufm
Iodine binding site 2 out of 2 in the Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I257

b:63.0
occ:0.70
 O A:HOH297 2.9 42.8 1.0
OG A:SER107 2.9 41.6 0.5
OG A:SER107 3.2 27.6 0.5
N A:SER107 3.6 38.6 0.5
N A:SER107 3.6 35.9 0.5
CB A:SER107 3.7 38.6 0.5
CB A:SER107 3.8 31.2 0.5
CD A:PRO106 4.1 40.0 1.0
CA A:SER107 4.3 37.0 0.5
N A:PRO106 4.3 36.3 1.0
CA A:SER107 4.3 33.0 0.5
CB A:PRO106 4.3 40.6 1.0
CB A:PRO105 4.4 39.6 1.0
CE1 A:TYR85 4.5 36.4 1.0
C A:PRO106 4.6 37.8 1.0
CA A:PRO106 4.6 37.5 1.0
CG A:PRO106 4.7 41.7 1.0
C A:PRO105 4.8 39.3 1.0
O A:HOH381 4.9 56.4 1.0

Reference:

N.P.George, J.L.Keck. Identification of the Ssb-Interaction Platform of Deinococcus Radiodurans Uracil-Dna Glycosylase To Be Published.
Page generated: Sun Aug 11 16:54:08 2024

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