Atomistry » Iodine » PDB 3ru1-3unh » 3ufm
Atomistry »
  Iodine »
    PDB 3ru1-3unh »
      3ufm »

Iodine in PDB 3ufm: Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein

Enzymatic activity of Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein

All present enzymatic activity of Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein:
3.2.2.27;

Protein crystallography data

The structure of Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein, PDB code: 3ufm was solved by N.P.George, J.L.Keck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.95
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 78.343, 92.640, 66.012, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 20.8

Iodine Binding Sites:

The binding sites of Iodine atom in the Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein (pdb code 3ufm). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein, PDB code: 3ufm:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 3ufm

Go back to Iodine Binding Sites List in 3ufm
Iodine binding site 1 out of 2 in the Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I256

b:36.5
occ:1.00
 O A:HOH349 3.5 36.2 1.0
N A:TYR39 3.7 36.7 1.0
CD A:PRO38 3.8 38.8 1.0
CB A:TYR39 4.1 35.7 1.0
CD2 A:TYR39 4.1 34.8 1.0
CB A:PRO38 4.1 35.1 1.0
N A:PRO38 4.2 36.7 1.0
CB A:ALA37 4.2 38.4 1.0
CG A:PRO38 4.2 38.3 1.0
CA A:TYR39 4.5 37.3 1.0
CA A:PRO38 4.5 35.6 1.0
C A:PRO38 4.6 36.5 1.0
CG A:TYR39 4.6 34.8 1.0
C A:ALA37 4.7 38.0 1.0
CA A:ALA37 4.8 38.2 1.0

Iodine binding site 2 out of 2 in 3ufm

Go back to Iodine Binding Sites List in 3ufm
Iodine binding site 2 out of 2 in the Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Co-Crystal Structure of Deinococcus Radiodurans Uracil-Dna Glycosylase and the C-Terminus of the Single-Stranded Dna-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I257

b:63.0
occ:0.70
 O A:HOH297 2.9 42.8 1.0
OG A:SER107 2.9 41.6 0.5
OG A:SER107 3.2 27.6 0.5
N A:SER107 3.6 38.6 0.5
N A:SER107 3.6 35.9 0.5
CB A:SER107 3.7 38.6 0.5
CB A:SER107 3.8 31.2 0.5
CD A:PRO106 4.1 40.0 1.0
CA A:SER107 4.3 37.0 0.5
N A:PRO106 4.3 36.3 1.0
CA A:SER107 4.3 33.0 0.5
CB A:PRO106 4.3 40.6 1.0
CB A:PRO105 4.4 39.6 1.0
CE1 A:TYR85 4.5 36.4 1.0
C A:PRO106 4.6 37.8 1.0
CA A:PRO106 4.6 37.5 1.0
CG A:PRO106 4.7 41.7 1.0
C A:PRO105 4.8 39.3 1.0
O A:HOH381 4.9 56.4 1.0

Reference:

N.P.George, J.L.Keck. Identification of the Ssb-Interaction Platform of Deinococcus Radiodurans Uracil-Dna Glycosylase To Be Published.
Page generated: Sun Aug 11 16:54:08 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy