Iodine in PDB 3vsn: The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein

The structure of The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein, PDB code: 3vsn was solved by Y.Kawaguchi, N.Sugiura, K.Kimata, M.Kimura, Y.Kakuta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.74 / 2.00
Space group	P 62
Cell size a, b, c (Å), α, β, γ (°)	118.172, 118.172, 100.099, 90.00, 90.00, 120.00
R / Rfree (%)	16.6 / 19.4

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 75;

Binding sites:

The binding sites of Iodine atom in the The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein (pdb code 3vsn). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 75 binding sites of Iodine where determined in the The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein, PDB code: 3vsn:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 75 in the The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:I801 b:16.7 occ:0.35 O A:HOH1171 3.1 26.3 1.0 CD1 A:ILE584 3.9 13.6 1.0 O2 A:GOL829 3.9 46.6 1.0 CG2 A:THR570 4.7 12.8 1.0

Iodine binding site 2 out of 75 in the The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:I802 b:14.9 occ:0.35 N A:LEU362 3.4 13.2 1.0 CA A:PRO361 4.0 13.3 1.0 CB A:LEU362 4.1 13.3 1.0 CB A:PRO361 4.2 13.3 1.0 C A:PRO361 4.2 13.3 1.0 O A:LEU362 4.2 13.2 1.0 CG A:LEU362 4.3 13.6 1.0 CA A:LEU362 4.3 13.1 1.0 CD1 A:LEU362 4.4 13.6 1.0 C A:LEU362 4.7 12.9 1.0

Iodine binding site 3 out of 75 in the The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:I803 b:14.4 occ:0.35 O A:HOH1042 3.3 14.0 1.0 N A:ALA673 3.3 17.0 1.0 O A:HOH1055 3.6 20.8 1.0 C A:GLU671 3.7 14.8 1.0 N A:LEU674 3.7 18.9 1.0 CA A:ALA673 3.8 17.8 1.0 C A:ALA673 3.8 18.3 1.0 CA A:GLU671 3.8 14.2 1.0 CB A:ALA673 3.8 17.6 1.0 N A:PRO672 3.9 15.5 1.0 O A:GLU671 4.0 14.4 1.0 CD A:PRO672 4.1 15.5 1.0 CB A:GLU671 4.1 14.4 1.0 O A:ALA673 4.4 18.5 1.0 C A:PRO672 4.4 16.7 1.0 CA A:LEU674 4.5 19.8 1.0 CG A:PRO672 4.7 15.9 1.0 CA A:PRO672 4.7 16.1 1.0 CG A:LEU674 4.9 20.1 1.0 CD2 A:LEU674 4.9 20.1 1.0

Iodine binding site 4 out of 75 in the The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:I804 b:20.2 occ:0.35 O A:HOH992 3.8 23.7 1.0 CA A:SER660 4.0 13.1 1.0 CE A:MET663 4.0 18.3 1.0 CB A:SER660 4.2 13.5 1.0 CB A:MET663 4.2 15.2 1.0 N A:SER660 4.3 13.0 1.0 CG A:MET663 4.4 16.7 1.0 C A:PHE659 4.6 13.0 1.0 O A:PHE659 4.7 12.9 1.0 CB A:PHE659 4.8 13.5 1.0

Iodine binding site 5 out of 75 in the The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:I805 b:14.8 occ:0.35 CB A:SER211 3.9 18.2 1.0 OG A:SER211 4.0 19.0 1.0 CA A:GLU208 4.1 18.7 1.0 O A:HOH1338 4.2 34.2 1.0 CG A:GLU208 4.4 20.1 1.0 CB A:GLU208 4.4 19.4 1.0 O A:ASP207 4.7 19.8 1.0 O A:HOH1322 4.8 32.8 1.0 N A:GLU208 4.8 19.1 1.0 O A:GLU208 4.9 17.4 1.0

Iodine binding site 6 out of 75 in the The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:I806 b:19.0 occ:0.32 ND2 A:ASN664 3.4 15.6 1.0 O A:HOH1329 3.4 29.4 1.0 O A:HOH1380 3.6 29.4 1.0 CB A:ASN664 3.8 14.4 1.0 O A:HOH974 4.0 15.6 1.0 CG A:ASN664 4.0 15.3 1.0 ND2 A:ASN634 4.1 12.6 1.0 O A:HOH1062 4.2 16.0 1.0 CG2 A:VAL661 4.3 12.8 1.0 CA A:VAL661 4.3 12.7 1.0 O A:HOH1313 4.3 29.6 1.0 O A:SER660 4.7 12.9 1.0 CB A:VAL661 4.7 12.8 1.0 CG1 A:VAL661 5.0 12.8 1.0 O A:VAL661 5.0 12.5 1.0

Iodine binding site 7 out of 75 in the The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:I807 b:17.8 occ:0.42 O A:HOH1041 3.6 17.1 1.0 ND2 A:ASN652 3.6 14.8 1.0 O A:HOH1086 4.0 19.7 1.0 CG A:PRO636 4.1 11.8 1.0 CD A:PRO636 4.2 11.8 1.0 CE1 A:TYR635 4.2 11.7 1.0 O A:HOH1331 4.2 29.1 1.0 CB A:PRO636 4.4 11.6 1.0 CG A:ASN652 4.6 14.8 1.0 CD1 A:TYR635 4.6 11.5 1.0 OD1 A:ASN652 4.6 15.9 1.0 N A:PRO636 4.9 11.7 1.0

Iodine binding site 8 out of 75 in the The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:I808 b:23.1 occ:0.53 O A:HOH1455 3.1 39.7 1.0 O A:HOH1344 3.3 32.4 1.0 N A:GLU619 3.5 18.0 1.0 CD1 A:ILE564 4.1 16.7 1.0 CA A:ASP618 4.1 21.4 1.0 CG1 A:ILE564 4.2 16.4 1.0 CA A:GLU619 4.3 16.6 1.0 C A:ASP618 4.3 19.8 1.0 NE A:ARG614 4.5 22.7 1.0 CD A:ARG614 4.5 20.8 1.0 CB A:ASP618 4.6 22.9 1.0 CD2 A:TYR503 4.7 11.5 1.0 CG A:ARG614 4.7 18.7 1.0 CD1 A:ILE621 4.7 11.3 1.0 OD1 A:ASP618 4.9 25.8 1.0 CG A:TYR503 4.9 11.3 1.0 CG A:ASP618 4.9 24.5 1.0

Iodine binding site 9 out of 75 in the The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:I809 b:15.9 occ:0.56 O A:HOH1024 3.4 14.6 1.0 OE1 A:GLU508 3.6 21.8 1.0 NZ A:LYS478 3.6 15.6 1.0 O A:HOH1500 3.9 33.2 1.0 OD1 A:ASN484 3.9 17.6 1.0 CB A:ASN484 4.0 15.5 1.0 CD A:PRO509 4.1 16.1 1.0 CE A:LYS478 4.1 14.8 1.0 CA A:GLU508 4.2 16.4 1.0 O A:HOH1498 4.2 47.6 1.0 CG A:ASN484 4.2 16.4 1.0 CD A:GLU508 4.3 20.6 1.0 O A:HOH1299 4.3 40.5 1.0 N A:GLU508 4.5 15.3 1.0 O A:HOH1070 4.6 20.7 1.0 O A:VAL507 4.7 13.9 1.0 OE2 A:GLU508 4.7 21.7 1.0 C A:VAL507 4.8 14.4 1.0 NE2 A:GLN486 4.8 13.4 1.0 O A:ASN484 4.9 14.1 1.0 O A:HOH1463 4.9 34.0 1.0 CB A:GLU508 4.9 17.6 1.0

Iodine binding site 10 out of 75 in the The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:I810 b:24.3 occ:0.55 O A:HOH1273 3.8 26.3 1.0 OD1 A:ASN400 3.8 21.3 1.0 N A:ASN346 3.9 17.9 1.0 OD1 A:ASN346 3.9 20.3 1.0 CB A:ASN346 4.1 18.7 1.0 N A:ARG345 4.2 17.7 1.0 CG A:ASN346 4.2 19.6 1.0 CB A:SER344 4.2 18.0 1.0 CB A:ARG345 4.6 18.3 1.0 CA A:ASN346 4.6 18.1 1.0 C A:ARG345 4.6 17.9 1.0 CA A:ARG345 4.6 17.9 1.0 OG A:SER344 4.7 18.3 1.0 NH2 A:ARG345 4.8 20.1 1.0 OD2 A:ASP397 4.8 21.8 1.0 CG A:ASN400 4.9 20.7 1.0 O A:HOH1443 4.9 36.9 1.0 C A:SER344 4.9 17.6 1.0

Y.Kawaguchi, N.Sugiura, K.Kimata, M.Kimura, Y.Kakuta. The Crystal Structure of Novel Chondroition Lyase Odv-E66, Baculovirus Envelope Protein To Be Published.