Iodine in PDB 4dgh: Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution

The structure of Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution, PDB code: 4dgh was solved by J.P.Keller, C.Chang, N.Marshall, J.Bearden, P.Dallos, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	65.18 / 1.90
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	90.850, 90.850, 65.180, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / 23.6

The structure of Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution also contains other interesting chemical elements:

Potassium

(K)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Iodine atom in the Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution (pdb code 4dgh). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 15 binding sites of Iodine where determined in the Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution, PDB code: 4dgh:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 15 in the Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:I602 b:44.0 occ:0.54 I A:IOD603 2.1 59.5 0.4 CE A:LYS517 3.5 37.6 1.0 CD A:LYS517 3.9 39.8 1.0 CA A:ILE485 4.1 25.7 1.0 N A:ILE485 4.2 26.0 1.0 NZ A:LYS517 4.2 32.0 1.0 CG1 A:ILE485 4.3 31.3 1.0 CB A:ILE485 4.3 26.5 1.0 CG1 A:ILE488 4.3 27.6 1.0 C A:ASP484 4.7 24.8 1.0 CB A:ILE488 4.7 23.8 1.0 CB A:ALA521 4.8 34.0 1.0 CG2 A:ILE488 4.9 27.3 1.0 CD1 A:ILE485 4.9 35.6 1.0

Iodine binding site 2 out of 15 in the Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:I603 b:59.5 occ:0.41 I A:IOD602 2.1 44.0 0.5 CB A:ALA521 3.8 34.0 1.0 CA A:ALA521 4.1 30.2 1.0 CE A:LYS517 4.1 37.6 1.0 CD A:LYS517 4.3 39.8 1.0 N A:ALA521 4.4 28.8 1.0 C A:LYS520 4.7 31.0 1.0 O A:LYS520 4.8 29.5 1.0 CB A:LYS520 5.0 35.2 1.0

Iodine binding site 3 out of 15 in the Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:I604 b:24.3 occ:0.48 O A:HOH707 2.9 27.3 1.0 NE A:ARG476 3.3 22.8 1.0 OG A:SER508 3.5 20.5 1.0 CB A:ARG476 3.5 18.9 1.0 CB A:LYS478 3.6 29.0 1.0 CA A:GLY509 3.7 21.1 1.0 O A:SER508 3.7 17.9 1.0 CB A:PHE536 3.7 23.7 1.0 NH2 A:ARG476 3.8 28.7 1.0 N A:LYS478 3.9 21.8 1.0 C A:SER508 3.9 19.3 1.0 CA A:ARG476 3.9 17.8 1.0 CG A:ARG476 4.0 20.1 1.0 CG A:LYS478 4.0 41.5 1.0 N A:GLY509 4.0 19.2 1.0 CZ A:ARG476 4.0 28.5 1.0 N A:LEU477 4.2 17.5 1.0 CB A:SER508 4.2 19.2 1.0 CD A:ARG476 4.2 22.8 1.0 CA A:LYS478 4.3 25.1 1.0 N A:PHE536 4.4 21.7 1.0 C A:ARG476 4.4 17.8 1.0 O A:HOH750 4.4 42.0 1.0 CA A:PHE536 4.4 21.8 1.0 CE A:LYS478 4.5 44.1 1.0 CG A:PHE536 4.6 22.0 1.0 CA A:SER508 4.7 18.1 1.0 C A:GLY509 4.8 20.6 1.0 CD A:LYS478 4.8 43.1 1.0 CD1 A:PHE536 4.8 20.7 1.0 C A:LEU477 4.9 20.5 1.0 O A:HOH748 5.0 38.9 1.0

Iodine binding site 4 out of 15 in the Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:I605 b:31.2 occ:1.00 N A:LEU438 3.8 24.9 1.0 CB A:THR437 4.0 32.1 1.0 CA A:THR437 4.1 29.6 1.0 CB A:LEU438 4.4 26.0 1.0 CG2 A:THR437 4.4 33.1 1.0 C A:THR437 4.5 28.2 1.0 CA A:LEU438 4.7 25.6 1.0 CG A:LEU438 4.8 28.5 1.0

Iodine binding site 5 out of 15 in the Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:I606 b:33.5 occ:0.93 CD A:PRO534 3.6 25.4 1.0 CG2 A:VAL535 3.8 22.0 0.5 CA A:GLY538 3.9 21.4 1.0 N A:VAL535 4.0 21.6 1.0 N A:PRO534 4.2 22.9 1.0 O A:VAL535 4.2 23.3 1.0 CD1 B:TYR428 4.3 30.5 1.0 CG A:PRO534 4.3 26.6 1.0 CE1 B:TYR428 4.3 32.8 1.0 N A:GLY538 4.3 20.6 1.0 CD1 A:TYR533 4.4 21.3 1.0 CB A:PRO534 4.5 25.9 1.0 CB A:TYR533 4.5 20.3 1.0 CB A:VAL535 4.6 24.0 0.5 CA A:VAL535 4.7 23.1 0.5 CA A:PRO534 4.7 23.4 1.0 C A:PRO534 4.8 22.4 1.0 CA A:VAL535 4.8 22.1 0.5 C A:GLY538 4.8 20.1 1.0 C A:TYR533 4.8 21.6 1.0 CA A:TYR533 4.9 20.7 1.0 C A:VAL535 4.9 22.1 1.0 O3 A:GOL609 4.9 60.1 1.0 CB A:VAL535 4.9 22.1 0.5

Iodine binding site 6 out of 15 in the Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:I607 b:36.9 occ:0.57 NH1 A:ARG476 3.5 31.8 1.0 CD A:ARG476 4.1 22.8 1.0 CB A:ALA446 4.3 22.7 1.0 CZ A:ARG476 4.4 28.5 1.0 CZ3 A:TRP479 4.4 42.0 1.0 CH2 A:TRP479 4.5 47.2 1.0 NE A:ARG476 4.7 22.8 1.0 CG1 A:VAL444 4.9 18.9 1.0

Iodine binding site 7 out of 15 in the Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:I601 b:29.0 occ:1.00 CG B:ARG513 3.1 27.9 0.5 CD B:ARG513 3.5 29.0 0.5 NZ B:LYS517 3.6 29.3 1.0 N B:MSE483 3.7 24.7 1.0 O B:MSE483 3.8 30.7 1.0 CB B:PHE482 4.0 24.7 1.0 CA B:PHE482 4.0 23.3 1.0 CB B:LYS517 4.2 25.9 1.0 NE B:ARG513 4.2 28.0 0.5 C B:PHE482 4.4 23.1 1.0 CG B:LYS517 4.4 27.8 1.0 O B:ARG513 4.5 24.4 1.0 CB B:ARG513 4.5 26.9 0.5 CD B:LYS517 4.5 31.4 1.0 CB B:ARG513 4.5 26.3 0.5 C B:ARG513 4.6 24.8 1.0 C B:MSE483 4.6 27.4 1.0 CE B:LYS517 4.7 34.0 1.0 N B:VAL514 4.7 22.9 1.0 CA B:MSE483 4.8 25.2 1.0 CA B:VAL514 4.9 21.6 1.0 CG2 B:VAL514 5.0 20.1 1.0

Iodine binding site 8 out of 15 in the Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:I602 b:43.2 occ:0.58 NH1 B:ARG476 3.6 31.2 1.0 CB B:ALA446 4.1 25.4 1.0 CD B:ARG476 4.2 24.3 1.0 CH2 B:TRP479 4.4 50.0 1.0 CZ3 B:TRP479 4.4 44.5 1.0 CZ B:ARG476 4.6 31.3 1.0 CG1 B:VAL444 4.8 21.0 1.0 NE B:ARG476 4.8 24.7 1.0

Iodine binding site 9 out of 15 in the Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:I603 b:36.4 occ:0.81 O A:HOH711 3.1 35.1 1.0 CD B:PRO534 3.7 29.8 1.0 CA B:GLY538 3.8 26.4 1.0 CG2 B:VAL535 3.8 23.5 0.5 N B:VAL535 4.0 23.7 1.0 CG B:PRO534 4.0 29.8 1.0 N B:PRO534 4.1 25.1 1.0 CE1 A:TYR428 4.2 33.6 1.0 CD1 A:TYR428 4.3 31.6 1.0 O B:VAL535 4.3 23.0 1.0 N B:GLY538 4.3 25.0 1.0 CD1 B:TYR533 4.4 24.4 1.0 CB B:TYR533 4.5 22.9 1.0 CB B:PRO534 4.6 29.0 1.0 CB B:VAL535 4.8 23.9 0.5 CA B:PRO534 4.8 25.3 1.0 CA B:VAL535 4.8 23.1 0.5 C B:GLY538 4.8 25.7 1.0 C B:TYR533 4.8 24.1 1.0 CA B:VAL535 4.8 23.4 0.5 CA B:TYR533 4.9 23.9 1.0 C B:PRO534 4.9 24.0 1.0 CB B:VAL535 4.9 24.7 0.5 C B:VAL535 5.0 23.5 1.0 CG B:TYR533 5.0 22.6 1.0

Iodine binding site 10 out of 15 in the Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:I604 b:40.5 occ:0.43 NE B:ARG440 4.1 75.4 1.0 NH2 B:ARG440 4.4 81.5 1.0 CG B:ARG440 4.4 48.1 1.0 CZ B:ARG440 4.5 80.8 1.0 CB B:ARG440 4.8 35.9 1.0 CD B:ARG440 4.8 58.0 1.0

J.P.Keller, C.Chang, P.Dallos, A.Joachimiak. Structure of Sulp Transporter Stas Domain From Vibrio Cholerae Refined to 1.9 Angstrom Resolution To Be Published.