Iodine in PDB 4gg2: The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1
Enzymatic activity of The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1
All present enzymatic activity of The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1:
2.3.2.2;
3.4.19.13;
3.4.19.14;
Protein crystallography data
The structure of The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1, PDB code: 4gg2
was solved by
M.B.West,
Y.Chen,
S.Wickham,
A.Heroux,
K.Cahill,
M.H.Hanigan,
B.H.M.Mooers,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.98 /
2.21
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
105.717,
126.753,
104.629,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
14 /
18.3
|
Other elements in 4gg2:
The structure of The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1 also contains other interesting chemical elements:
Iodine Binding Sites:
The binding sites of Iodine atom in the The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1
(pdb code 4gg2). This binding sites where shown within
5.0 Angstroms radius around Iodine atom.
In total 10 binding sites of Iodine where determined in the
The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1, PDB code: 4gg2:
Jump to Iodine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iodine binding site 1 out
of 10 in 4gg2
Go back to
Iodine Binding Sites List in 4gg2
Iodine binding site 1 out
of 10 in the The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 1 of The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I406
b:44.4
occ:0.48
|
H83
|
A:NAG401
|
2.9
|
56.1
|
1.0
|
HB3
|
A:ALA64
|
3.0
|
33.0
|
1.0
|
H
|
A:VAL65
|
3.0
|
33.9
|
1.0
|
HG22
|
A:VAL65
|
3.1
|
36.9
|
1.0
|
HB2
|
A:SER63
|
3.2
|
35.5
|
1.0
|
HB3
|
A:HIS148
|
3.3
|
38.4
|
1.0
|
O
|
A:HOH742
|
3.3
|
31.5
|
1.0
|
H82
|
A:NAG401
|
3.3
|
56.1
|
1.0
|
H
|
A:ALA64
|
3.5
|
40.0
|
1.0
|
C8
|
A:NAG401
|
3.6
|
46.8
|
1.0
|
HB3
|
B:SER392
|
3.6
|
37.3
|
1.0
|
HG22
|
A:ILE93
|
3.8
|
37.6
|
1.0
|
HG21
|
A:VAL65
|
3.8
|
36.9
|
1.0
|
N
|
A:VAL65
|
3.8
|
28.2
|
1.0
|
CG2
|
A:VAL65
|
3.8
|
30.8
|
1.0
|
HB
|
A:VAL65
|
3.9
|
37.8
|
1.0
|
CB
|
A:ALA64
|
3.9
|
27.5
|
1.0
|
N
|
A:ALA64
|
4.0
|
33.3
|
1.0
|
HG23
|
A:ILE93
|
4.0
|
37.6
|
1.0
|
CB
|
A:SER63
|
4.1
|
29.5
|
1.0
|
CB
|
A:HIS148
|
4.2
|
32.0
|
1.0
|
HG23
|
B:VAL394
|
4.2
|
34.1
|
1.0
|
HD1
|
A:HIS148
|
4.2
|
50.2
|
1.0
|
CG2
|
A:ILE93
|
4.2
|
31.4
|
1.0
|
HG21
|
A:ILE93
|
4.2
|
37.6
|
1.0
|
H81
|
A:NAG401
|
4.3
|
56.1
|
1.0
|
HB2
|
A:ALA64
|
4.3
|
33.0
|
1.0
|
HB2
|
B:SER392
|
4.3
|
37.3
|
1.0
|
CB
|
A:VAL65
|
4.3
|
31.5
|
1.0
|
CA
|
A:ALA64
|
4.4
|
33.8
|
1.0
|
CB
|
B:SER392
|
4.4
|
31.1
|
1.0
|
HG
|
A:SER63
|
4.4
|
37.0
|
1.0
|
HB2
|
A:HIS148
|
4.4
|
38.4
|
1.0
|
ND1
|
A:HIS148
|
4.4
|
41.8
|
1.0
|
CG
|
A:HIS148
|
4.4
|
34.0
|
1.0
|
C7
|
A:NAG401
|
4.5
|
57.2
|
1.0
|
HG22
|
B:VAL394
|
4.5
|
34.1
|
1.0
|
C
|
A:ALA64
|
4.5
|
32.5
|
1.0
|
OG
|
A:SER63
|
4.5
|
30.8
|
1.0
|
HB1
|
A:ALA64
|
4.6
|
33.0
|
1.0
|
HG21
|
B:VAL394
|
4.6
|
34.1
|
1.0
|
HG
|
B:SER392
|
4.6
|
41.4
|
1.0
|
HB3
|
A:SER63
|
4.6
|
35.5
|
1.0
|
CG2
|
B:VAL394
|
4.6
|
28.4
|
1.0
|
HG23
|
A:VAL65
|
4.6
|
36.9
|
1.0
|
CA
|
A:VAL65
|
4.7
|
27.1
|
1.0
|
O
|
A:HIS148
|
4.8
|
34.6
|
1.0
|
C
|
A:SER63
|
4.8
|
30.9
|
1.0
|
O7
|
A:NAG401
|
4.9
|
51.7
|
1.0
|
CA
|
A:SER63
|
4.9
|
29.3
|
1.0
|
H
|
B:ALA393
|
4.9
|
32.8
|
1.0
|
HA
|
A:SER63
|
5.0
|
35.2
|
1.0
|
OG
|
B:SER392
|
5.0
|
34.5
|
1.0
|
|
Iodine binding site 2 out
of 10 in 4gg2
Go back to
Iodine Binding Sites List in 4gg2
Iodine binding site 2 out
of 10 in the The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 2 of The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I407
b:60.3
occ:0.48
|
HZ2
|
A:LYS52
|
2.8
|
96.1
|
1.0
|
HD3
|
A:LYS48
|
3.0
|
64.6
|
1.0
|
HE3
|
A:LYS52
|
3.0
|
89.6
|
1.0
|
O
|
A:HOH678
|
3.1
|
48.9
|
1.0
|
NZ
|
A:LYS52
|
3.5
|
80.1
|
1.0
|
HB2
|
A:GLN49
|
3.5
|
42.5
|
1.0
|
HZ1
|
A:LYS52
|
3.6
|
96.1
|
1.0
|
HA
|
A:GLN49
|
3.6
|
36.5
|
1.0
|
HB3
|
A:LYS48
|
3.6
|
44.6
|
1.0
|
CE
|
A:LYS52
|
3.6
|
74.7
|
1.0
|
HD2
|
A:LYS52
|
3.7
|
61.0
|
1.0
|
HG2
|
A:LYS48
|
3.7
|
47.4
|
1.0
|
CD
|
A:LYS48
|
3.9
|
53.9
|
1.0
|
H
|
A:GLN49
|
4.0
|
35.1
|
1.0
|
N
|
A:GLN49
|
4.0
|
29.3
|
1.0
|
CA
|
A:GLN49
|
4.1
|
30.4
|
1.0
|
CG
|
A:LYS48
|
4.2
|
39.5
|
1.0
|
CD
|
A:LYS52
|
4.2
|
50.9
|
1.0
|
CB
|
A:GLN49
|
4.2
|
35.5
|
1.0
|
HZ3
|
A:LYS52
|
4.3
|
96.1
|
1.0
|
CB
|
A:LYS48
|
4.4
|
37.2
|
1.0
|
NE2
|
A:GLN49
|
4.4
|
54.4
|
1.0
|
HE22
|
A:GLN49
|
4.4
|
65.3
|
1.0
|
CD
|
A:GLN49
|
4.4
|
63.2
|
1.0
|
O
|
A:HOH706
|
4.5
|
43.0
|
1.0
|
HE2
|
A:LYS52
|
4.5
|
89.6
|
1.0
|
HE2
|
A:LYS48
|
4.5
|
84.5
|
1.0
|
HD2
|
A:LYS48
|
4.5
|
64.6
|
1.0
|
C
|
A:LYS48
|
4.5
|
26.1
|
1.0
|
OE1
|
A:GLN49
|
4.5
|
56.5
|
1.0
|
HG3
|
A:LYS52
|
4.6
|
40.8
|
1.0
|
HZ2
|
A:LYS48
|
4.6
|
91.5
|
1.0
|
HE21
|
A:GLN49
|
4.6
|
65.3
|
1.0
|
CE
|
A:LYS48
|
4.7
|
70.4
|
1.0
|
O
|
A:HOH665
|
4.8
|
32.8
|
1.0
|
HD3
|
A:LYS52
|
4.9
|
61.0
|
1.0
|
HB3
|
A:GLN49
|
5.0
|
42.5
|
1.0
|
CG
|
A:GLN49
|
5.0
|
44.3
|
1.0
|
|
Iodine binding site 3 out
of 10 in 4gg2
Go back to
Iodine Binding Sites List in 4gg2
Iodine binding site 3 out
of 10 in the The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 3 of The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I408
b:54.8
occ:0.41
|
H
|
A:ALA258
|
2.7
|
38.5
|
1.0
|
HG3
|
A:ARG139
|
3.1
|
52.0
|
1.0
|
HB3
|
A:ALA258
|
3.3
|
39.1
|
1.0
|
HA
|
A:ARG257
|
3.4
|
36.1
|
1.0
|
O
|
A:HOH627
|
3.4
|
43.0
|
1.0
|
HD2
|
A:ARG257
|
3.4
|
53.5
|
1.0
|
N
|
A:ALA258
|
3.4
|
32.1
|
1.0
|
HG2
|
A:ARG139
|
3.5
|
52.0
|
1.0
|
HD2
|
A:ARG139
|
3.7
|
46.2
|
1.0
|
CG
|
A:ARG139
|
3.7
|
43.4
|
1.0
|
HB3
|
A:ARG257
|
3.7
|
43.9
|
1.0
|
HD3
|
A:ARG257
|
3.7
|
53.5
|
1.0
|
O
|
A:ALA258
|
3.7
|
30.2
|
1.0
|
HB2
|
A:LEU143
|
3.8
|
30.8
|
1.0
|
CD
|
A:ARG257
|
4.0
|
44.6
|
1.0
|
CA
|
A:ARG257
|
4.1
|
30.1
|
1.0
|
CB
|
A:ALA258
|
4.1
|
32.6
|
1.0
|
CD
|
A:ARG139
|
4.1
|
38.5
|
1.0
|
HD22
|
A:LEU143
|
4.1
|
34.9
|
1.0
|
CA
|
A:ALA258
|
4.2
|
30.8
|
1.0
|
C
|
A:ARG257
|
4.2
|
38.2
|
1.0
|
HD13
|
A:LEU143
|
4.3
|
37.5
|
1.0
|
CB
|
A:ARG257
|
4.3
|
36.6
|
1.0
|
HB2
|
A:ALA258
|
4.3
|
39.1
|
1.0
|
C
|
A:ALA258
|
4.4
|
37.6
|
1.0
|
NE
|
A:ARG139
|
4.4
|
43.6
|
1.0
|
HE
|
A:ARG139
|
4.5
|
52.4
|
1.0
|
O
|
A:ARG139
|
4.7
|
28.4
|
1.0
|
CB
|
A:LEU143
|
4.7
|
25.6
|
1.0
|
CG
|
A:ARG257
|
4.8
|
42.4
|
1.0
|
HB1
|
A:ALA258
|
4.9
|
39.1
|
1.0
|
|
Iodine binding site 4 out
of 10 in 4gg2
Go back to
Iodine Binding Sites List in 4gg2
Iodine binding site 4 out
of 10 in the The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 4 of The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I409
b:78.2
occ:0.52
|
HG2
|
A:PRO365
|
3.0
|
45.1
|
1.0
|
OG
|
A:SER367
|
3.1
|
42.1
|
1.0
|
HG
|
A:SER367
|
3.2
|
50.6
|
1.0
|
HB2
|
A:TYR368
|
3.2
|
35.2
|
1.0
|
HA
|
A:TYR368
|
3.5
|
37.7
|
1.0
|
H
|
A:TYR368
|
3.6
|
39.8
|
1.0
|
O
|
A:HOH846
|
3.7
|
54.8
|
1.0
|
N
|
A:TYR368
|
3.7
|
33.2
|
1.0
|
HD1
|
A:TYR368
|
3.8
|
37.0
|
1.0
|
CA
|
A:TYR368
|
3.9
|
31.4
|
1.0
|
CB
|
A:TYR368
|
3.9
|
29.3
|
1.0
|
CG
|
A:PRO365
|
4.0
|
37.6
|
1.0
|
C
|
A:SER367
|
4.3
|
31.6
|
1.0
|
HG3
|
A:PRO365
|
4.3
|
45.1
|
1.0
|
CB
|
A:SER367
|
4.3
|
32.3
|
1.0
|
HD2
|
A:PRO365
|
4.4
|
42.5
|
1.0
|
HB2
|
A:SER367
|
4.5
|
38.8
|
1.0
|
HB2
|
A:PRO365
|
4.5
|
36.5
|
1.0
|
HB3
|
A:TYR368
|
4.6
|
35.2
|
1.0
|
CD1
|
A:TYR368
|
4.6
|
30.8
|
1.0
|
O
|
A:SER367
|
4.8
|
33.2
|
1.0
|
CD
|
A:PRO365
|
4.8
|
35.4
|
1.0
|
CA
|
A:SER367
|
4.8
|
36.1
|
1.0
|
CG
|
A:TYR368
|
4.8
|
33.8
|
1.0
|
CB
|
A:PRO365
|
4.9
|
30.4
|
1.0
|
H
|
A:SER367
|
4.9
|
38.8
|
1.0
|
O
|
A:PRO365
|
5.0
|
31.8
|
1.0
|
|
Iodine binding site 5 out
of 10 in 4gg2
Go back to
Iodine Binding Sites List in 4gg2
Iodine binding site 5 out
of 10 in the The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 5 of The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I410
b:37.9
occ:0.37
|
HH21
|
B:ARG409
|
2.5
|
40.5
|
1.0
|
H
|
A:LEU213
|
2.5
|
33.2
|
0.5
|
H
|
A:LEU213
|
2.6
|
33.2
|
0.5
|
H
|
A:GLN212
|
2.8
|
38.6
|
1.0
|
HB3
|
A:LEU210
|
2.9
|
40.8
|
1.0
|
HA
|
A:LEU210
|
2.9
|
42.8
|
1.0
|
HB2
|
A:GLN212
|
2.9
|
37.8
|
1.0
|
O
|
B:HOH707
|
3.0
|
25.9
|
1.0
|
HG11
|
A:VAL194
|
3.1
|
52.8
|
1.0
|
HB2
|
A:LEU213
|
3.3
|
32.0
|
0.5
|
C
|
A:LEU210
|
3.3
|
31.3
|
1.0
|
NH2
|
B:ARG409
|
3.3
|
33.8
|
1.0
|
HG
|
A:LEU213
|
3.3
|
31.1
|
0.5
|
N
|
A:LEU213
|
3.3
|
27.6
|
0.5
|
N
|
A:LEU213
|
3.3
|
27.6
|
0.5
|
CA
|
A:LEU210
|
3.4
|
35.7
|
1.0
|
N
|
A:GLN212
|
3.4
|
32.1
|
1.0
|
HA3
|
B:GLY414
|
3.4
|
38.2
|
1.0
|
HD2
|
A:PRO211
|
3.4
|
39.2
|
1.0
|
HE
|
B:ARG409
|
3.4
|
43.4
|
1.0
|
HB2
|
A:LEU213
|
3.5
|
32.1
|
0.5
|
HD23
|
A:LEU210
|
3.5
|
40.0
|
1.0
|
CB
|
A:LEU210
|
3.6
|
34.0
|
1.0
|
HD21
|
A:LEU210
|
3.6
|
40.0
|
1.0
|
N
|
A:PRO211
|
3.6
|
34.9
|
1.0
|
O
|
A:LEU210
|
3.7
|
33.0
|
1.0
|
CB
|
A:GLN212
|
3.8
|
31.5
|
1.0
|
HH22
|
B:ARG409
|
3.8
|
40.5
|
1.0
|
HD13
|
A:LEU213
|
3.8
|
33.6
|
0.5
|
CA
|
A:GLN212
|
3.9
|
30.5
|
1.0
|
OE1
|
A:GLN212
|
3.9
|
43.3
|
1.0
|
HB3
|
A:LEU213
|
3.9
|
32.0
|
0.5
|
CD2
|
A:LEU210
|
3.9
|
33.3
|
1.0
|
CB
|
A:LEU213
|
4.0
|
26.6
|
0.5
|
CG1
|
A:VAL194
|
4.0
|
44.0
|
1.0
|
CG
|
A:LEU213
|
4.0
|
25.9
|
0.5
|
CD
|
A:PRO211
|
4.0
|
32.7
|
1.0
|
HA2
|
B:GLY414
|
4.0
|
38.2
|
1.0
|
CB
|
A:LEU213
|
4.0
|
26.7
|
0.5
|
C
|
A:GLN212
|
4.1
|
27.1
|
1.0
|
NE
|
B:ARG409
|
4.1
|
36.1
|
1.0
|
CA
|
B:GLY414
|
4.2
|
31.8
|
1.0
|
CZ
|
B:ARG409
|
4.2
|
37.5
|
1.0
|
HG12
|
A:VAL194
|
4.2
|
52.8
|
1.0
|
CA
|
A:LEU213
|
4.3
|
26.5
|
0.5
|
HB3
|
A:GLN212
|
4.3
|
37.8
|
1.0
|
CA
|
A:LEU213
|
4.3
|
26.5
|
0.5
|
C
|
A:PRO211
|
4.3
|
30.9
|
1.0
|
HB2
|
A:LEU210
|
4.3
|
40.8
|
1.0
|
CD1
|
A:LEU213
|
4.4
|
28.0
|
0.5
|
CG
|
A:LEU210
|
4.4
|
32.1
|
1.0
|
HG13
|
A:VAL194
|
4.4
|
52.8
|
1.0
|
CA
|
A:PRO211
|
4.5
|
35.5
|
1.0
|
HG21
|
A:VAL194
|
4.6
|
38.0
|
1.0
|
HG2
|
A:PRO211
|
4.6
|
43.7
|
1.0
|
CD
|
A:GLN212
|
4.7
|
40.6
|
1.0
|
O
|
B:GLY414
|
4.7
|
26.3
|
1.0
|
H
|
A:ALA214
|
4.7
|
30.7
|
0.5
|
HD3
|
A:PRO211
|
4.7
|
39.2
|
1.0
|
HD12
|
A:LEU213
|
4.7
|
33.6
|
0.5
|
HA
|
A:LEU213
|
4.8
|
31.8
|
0.5
|
HA
|
A:LEU213
|
4.8
|
31.8
|
0.5
|
N
|
A:LEU210
|
4.8
|
33.5
|
1.0
|
HA
|
A:GLN212
|
4.8
|
36.5
|
1.0
|
CG
|
A:GLN212
|
4.8
|
39.5
|
1.0
|
HD22
|
A:LEU210
|
4.8
|
40.0
|
1.0
|
CG
|
A:PRO211
|
4.9
|
36.4
|
1.0
|
C
|
B:GLY414
|
4.9
|
29.3
|
1.0
|
HB
|
A:VAL194
|
4.9
|
44.7
|
1.0
|
HB3
|
A:LEU213
|
5.0
|
32.1
|
0.5
|
|
Iodine binding site 6 out
of 10 in 4gg2
Go back to
Iodine Binding Sites List in 4gg2
Iodine binding site 6 out
of 10 in the The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 6 of The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:I603
b:41.2
occ:0.49
|
HD1
|
B:HIS532
|
2.7
|
35.7
|
1.0
|
HD22
|
B:ASN506
|
2.8
|
35.9
|
1.0
|
H
|
B:HIS533
|
3.1
|
45.1
|
1.0
|
HA
|
B:HIS532
|
3.2
|
38.4
|
1.0
|
HD21
|
B:ASN506
|
3.3
|
35.9
|
1.0
|
HB3
|
B:HIS532
|
3.4
|
35.6
|
1.0
|
ND2
|
B:ASN506
|
3.4
|
29.9
|
1.0
|
OG1
|
B:THR513
|
3.4
|
30.0
|
1.0
|
ND1
|
B:HIS532
|
3.5
|
29.8
|
1.0
|
HA
|
B:VAL512
|
3.5
|
44.1
|
1.0
|
HG1
|
B:THR513
|
3.6
|
36.0
|
1.0
|
N
|
B:HIS533
|
3.8
|
37.6
|
1.0
|
H
|
B:THR513
|
3.8
|
33.9
|
1.0
|
CA
|
B:HIS532
|
3.9
|
32.0
|
1.0
|
CB
|
B:HIS532
|
3.9
|
29.7
|
1.0
|
HG21
|
A:THR363
|
3.9
|
30.7
|
1.0
|
NH1
|
A:ARG321
|
4.0
|
29.7
|
1.0
|
N
|
B:THR513
|
4.0
|
28.2
|
1.0
|
HH12
|
A:ARG321
|
4.0
|
35.6
|
1.0
|
HH11
|
A:ARG321
|
4.0
|
35.6
|
1.0
|
CA
|
B:VAL512
|
4.1
|
36.8
|
1.0
|
HG1
|
A:THR363
|
4.1
|
29.1
|
1.0
|
C
|
B:VAL512
|
4.1
|
33.1
|
1.0
|
O
|
B:HIS533
|
4.1
|
44.0
|
1.0
|
CG
|
B:HIS532
|
4.2
|
28.8
|
1.0
|
N
|
B:VAL512
|
4.2
|
41.0
|
1.0
|
HD2
|
A:ARG321
|
4.2
|
35.7
|
1.0
|
O
|
B:ASN511
|
4.2
|
52.2
|
1.0
|
CZ
|
A:ARG321
|
4.3
|
29.8
|
1.0
|
C
|
B:ASN511
|
4.3
|
53.3
|
1.0
|
C
|
B:HIS532
|
4.3
|
32.8
|
1.0
|
H62
|
B:NAG601
|
4.4
|
57.0
|
1.0
|
OD1
|
B:ASN511
|
4.5
|
35.7
|
1.0
|
CB
|
B:THR513
|
4.5
|
26.4
|
1.0
|
H
|
B:VAL512
|
4.5
|
49.2
|
1.0
|
HB
|
B:THR513
|
4.5
|
31.7
|
1.0
|
CE1
|
B:HIS532
|
4.6
|
27.2
|
1.0
|
HB2
|
B:HIS533
|
4.6
|
46.3
|
1.0
|
CG
|
B:ASN506
|
4.7
|
32.2
|
1.0
|
NH2
|
A:ARG321
|
4.7
|
27.5
|
1.0
|
H61
|
B:NAG601
|
4.7
|
57.0
|
1.0
|
HH22
|
A:ARG321
|
4.7
|
33.0
|
1.0
|
NE
|
A:ARG321
|
4.7
|
29.6
|
1.0
|
HG13
|
A:VAL317
|
4.8
|
27.9
|
1.0
|
O
|
B:VAL512
|
4.8
|
32.7
|
1.0
|
CA
|
B:THR513
|
4.8
|
31.2
|
1.0
|
HE1
|
B:HIS532
|
4.8
|
32.7
|
1.0
|
CA
|
B:HIS533
|
4.8
|
37.9
|
1.0
|
HB2
|
B:HIS532
|
4.8
|
35.6
|
1.0
|
CG2
|
A:THR363
|
4.8
|
25.6
|
1.0
|
C
|
B:HIS533
|
4.9
|
32.7
|
1.0
|
HA
|
B:ASN511
|
4.9
|
45.9
|
1.0
|
OG1
|
A:THR363
|
4.9
|
24.3
|
1.0
|
ND1
|
B:HIS533
|
4.9
|
64.5
|
1.0
|
CD
|
A:ARG321
|
5.0
|
29.8
|
1.0
|
C6
|
B:NAG601
|
5.0
|
47.5
|
1.0
|
HG12
|
A:VAL317
|
5.0
|
27.9
|
1.0
|
|
Iodine binding site 7 out
of 10 in 4gg2
Go back to
Iodine Binding Sites List in 4gg2
Iodine binding site 7 out
of 10 in the The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 7 of The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:I604
b:56.2
occ:0.48
|
HA
|
B:ARG497
|
3.0
|
40.1
|
1.0
|
HB2
|
B:GLU500
|
3.3
|
32.4
|
1.0
|
HG3
|
B:LYS496
|
3.4
|
33.4
|
1.0
|
O
|
A:HOH753
|
3.7
|
53.5
|
1.0
|
HG3
|
B:GLU500
|
3.7
|
35.8
|
1.0
|
HG3
|
B:ARG497
|
3.7
|
47.4
|
1.0
|
CA
|
B:ARG497
|
3.8
|
33.4
|
1.0
|
HB2
|
B:ARG497
|
3.9
|
41.8
|
1.0
|
CB
|
B:GLU500
|
4.0
|
27.0
|
1.0
|
HB3
|
B:GLU500
|
4.1
|
32.4
|
1.0
|
N
|
B:ARG497
|
4.2
|
26.1
|
1.0
|
O
|
A:HOH791
|
4.2
|
57.4
|
1.0
|
CB
|
B:ARG497
|
4.2
|
34.8
|
1.0
|
CG
|
B:GLU500
|
4.2
|
29.8
|
1.0
|
CG
|
B:LYS496
|
4.3
|
27.9
|
1.0
|
HA
|
A:PRO33
|
4.3
|
0.1
|
1.0
|
O
|
B:LYS496
|
4.4
|
29.3
|
1.0
|
HG2
|
B:LYS496
|
4.4
|
33.4
|
1.0
|
C
|
B:LYS496
|
4.4
|
29.3
|
1.0
|
CG
|
B:ARG497
|
4.5
|
39.5
|
1.0
|
HG2
|
B:GLU500
|
4.5
|
35.8
|
1.0
|
HB3
|
B:LYS496
|
4.5
|
37.1
|
1.0
|
H
|
B:ARG497
|
4.6
|
31.4
|
1.0
|
CB
|
B:LYS496
|
4.9
|
30.9
|
1.0
|
HD2
|
B:ARG497
|
4.9
|
49.6
|
1.0
|
H
|
A:ASP34
|
5.0
|
83.0
|
1.0
|
HE3
|
B:LYS496
|
5.0
|
36.0
|
1.0
|
|
Iodine binding site 8 out
of 10 in 4gg2
Go back to
Iodine Binding Sites List in 4gg2
Iodine binding site 8 out
of 10 in the The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 8 of The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:I605
b:44.3
occ:0.28
|
I
|
B:IOD605
|
0.0
|
44.3
|
0.3
|
H
|
B:GLY473
|
2.8
|
56.2
|
1.0
|
OG1
|
B:THR381
|
2.9
|
32.1
|
0.7
|
O
|
B:HOH724
|
2.9
|
38.2
|
1.0
|
HA2
|
B:GLY473
|
3.0
|
56.5
|
1.0
|
O
|
B:GLY473
|
3.1
|
82.6
|
1.0
|
C
|
B:GLY473
|
3.2
|
52.6
|
1.0
|
CA
|
B:GLY473
|
3.3
|
47.1
|
1.0
|
O
|
B:HOH737
|
3.3
|
41.1
|
1.0
|
N
|
B:GLY473
|
3.4
|
46.9
|
1.0
|
HB
|
B:THR381
|
3.4
|
32.8
|
0.3
|
O
|
B:HOH770
|
3.6
|
37.1
|
0.6
|
N
|
B:THR381
|
3.6
|
22.9
|
1.0
|
I
|
B:IOD605
|
3.8
|
50.5
|
0.3
|
OG1
|
B:THR381
|
3.8
|
29.8
|
0.3
|
HE1
|
B:TYR403
|
3.8
|
49.0
|
1.0
|
HG1
|
B:THR381
|
4.0
|
35.7
|
0.3
|
CB
|
B:THR381
|
4.0
|
27.3
|
0.3
|
N
|
B:GLY474
|
4.0
|
44.0
|
1.0
|
CB
|
B:THR381
|
4.1
|
27.0
|
0.7
|
HA2
|
B:GLY474
|
4.1
|
55.3
|
1.0
|
O
|
B:HOH710
|
4.2
|
32.0
|
1.0
|
HA3
|
B:GLY473
|
4.2
|
56.5
|
1.0
|
HB3
|
B:ALA472
|
4.3
|
35.8
|
1.0
|
CA
|
B:THR381
|
4.4
|
27.0
|
0.7
|
CA
|
B:THR381
|
4.4
|
27.1
|
0.3
|
O
|
B:ASN401
|
4.5
|
27.4
|
1.0
|
O
|
B:THR381
|
4.5
|
25.3
|
1.0
|
H
|
B:GLY474
|
4.5
|
52.8
|
1.0
|
CA
|
B:GLY474
|
4.6
|
46.1
|
1.0
|
C
|
B:ALA472
|
4.6
|
37.7
|
1.0
|
CG2
|
B:THR381
|
4.6
|
28.8
|
0.7
|
CE1
|
B:TYR403
|
4.7
|
40.9
|
1.0
|
HD1
|
B:TYR403
|
4.8
|
38.3
|
1.0
|
O
|
B:HOH806
|
4.8
|
55.4
|
1.0
|
HB2
|
A:SER82
|
4.9
|
34.2
|
1.0
|
C
|
B:THR381
|
4.9
|
24.8
|
1.0
|
HD12
|
B:ILE477
|
4.9
|
29.9
|
1.0
|
|
Iodine binding site 9 out
of 10 in 4gg2
Go back to
Iodine Binding Sites List in 4gg2
Iodine binding site 9 out
of 10 in the The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 9 of The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:I605
b:50.5
occ:0.33
|
I
|
B:IOD605
|
0.0
|
50.5
|
0.3
|
O
|
A:HOH626
|
2.9
|
20.2
|
0.6
|
HZ1
|
B:LYS562
|
3.1
|
39.6
|
1.0
|
HA2
|
B:GLY473
|
3.1
|
56.5
|
1.0
|
HG22
|
B:VAL543
|
3.1
|
33.4
|
1.0
|
HH
|
B:TYR403
|
3.3
|
52.5
|
1.0
|
O
|
B:HOH724
|
3.4
|
38.2
|
1.0
|
HE1
|
B:TYR403
|
3.4
|
49.0
|
1.0
|
HD2
|
B:LYS562
|
3.6
|
35.6
|
1.0
|
I
|
B:IOD605
|
3.8
|
44.3
|
0.3
|
HE3
|
B:LYS562
|
3.9
|
30.9
|
1.0
|
NZ
|
B:LYS562
|
3.9
|
33.0
|
1.0
|
CA
|
B:GLY473
|
4.0
|
47.1
|
1.0
|
CG2
|
B:VAL543
|
4.0
|
27.8
|
1.0
|
OH
|
B:TYR403
|
4.2
|
43.8
|
1.0
|
HZ3
|
B:LYS562
|
4.2
|
39.6
|
1.0
|
HZ
|
B:PHE540
|
4.2
|
41.5
|
1.0
|
HB3
|
B:ALA472
|
4.2
|
35.8
|
1.0
|
HG23
|
B:VAL543
|
4.2
|
33.4
|
1.0
|
CE
|
B:LYS562
|
4.2
|
25.8
|
1.0
|
HE1
|
B:PHE540
|
4.3
|
43.9
|
1.0
|
N
|
B:GLY473
|
4.3
|
46.9
|
1.0
|
CE1
|
B:TYR403
|
4.3
|
40.9
|
1.0
|
HE2
|
A:HIS81
|
4.3
|
32.4
|
1.0
|
H
|
B:GLY473
|
4.4
|
56.2
|
1.0
|
O
|
B:THR381
|
4.4
|
25.3
|
1.0
|
CD
|
B:LYS562
|
4.4
|
29.6
|
1.0
|
HB2
|
B:ALA472
|
4.4
|
35.8
|
1.0
|
HA3
|
B:GLY473
|
4.4
|
56.5
|
1.0
|
HG21
|
B:VAL543
|
4.5
|
33.4
|
1.0
|
HZ2
|
B:LYS562
|
4.5
|
39.6
|
1.0
|
HB2
|
A:SER82
|
4.6
|
34.2
|
1.0
|
CZ
|
B:TYR403
|
4.7
|
38.6
|
1.0
|
HB3
|
A:SER82
|
4.7
|
34.2
|
1.0
|
HB
|
B:VAL543
|
4.7
|
29.0
|
1.0
|
CB
|
B:ALA472
|
4.8
|
29.8
|
1.0
|
C
|
B:ALA472
|
4.8
|
37.7
|
1.0
|
O
|
B:GLY473
|
4.9
|
82.6
|
1.0
|
CZ
|
B:PHE540
|
4.9
|
34.6
|
1.0
|
CE1
|
B:PHE540
|
4.9
|
36.6
|
1.0
|
C
|
B:GLY473
|
5.0
|
52.6
|
1.0
|
HD3
|
B:LYS562
|
5.0
|
35.6
|
1.0
|
NE2
|
A:HIS81
|
5.0
|
27.0
|
1.0
|
|
Iodine binding site 10 out
of 10 in 4gg2
Go back to
Iodine Binding Sites List in 4gg2
Iodine binding site 10 out
of 10 in the The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 10 of The Crystal Structure of Glutamate-Bound Human Gamma- Glutamyltranspeptidase 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:I606
b:61.2
occ:0.49
|
HD1
|
B:PHE433
|
3.4
|
78.8
|
1.0
|
HE1
|
B:PHE433
|
3.8
|
62.0
|
1.0
|
CD1
|
B:PHE433
|
4.2
|
65.6
|
1.0
|
CE1
|
B:PHE433
|
4.4
|
51.7
|
1.0
|
|
Reference:
M.B.West,
Y.Chen,
S.Wickham,
A.Heroux,
K.Cahill,
M.H.Hanigan,
B.H.Mooers.
Novel Insights Into Eukaryotic Gamma-Glutamyltranspeptidase 1 From the Crystal Structure of the Glutamate-Bound Human Enzyme. J.Biol.Chem. V. 288 31902 2013.
ISSN: ISSN 0021-9258
PubMed: 24047895
DOI: 10.1074/JBC.M113.498139
Page generated: Sun Aug 11 17:46:36 2024
|