Iodine in PDB 4h8g: Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22
Protein crystallography data
The structure of Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22, PDB code: 4h8g
was solved by
B.Chi,
N.R.Zaccai,
R.L.Brady,
D.N.Woolfson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.40 /
1.70
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
51.990,
126.800,
127.530,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
24.7 /
28
|
Iodine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iodine atom in the Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22
(pdb code 4h8g). This binding sites where shown within
5.0 Angstroms radius around Iodine atom.
In total 12 binding sites of Iodine where determined in the
Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22, PDB code: 4h8g:
Jump to Iodine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iodine binding site 1 out
of 12 in 4h8g
Go back to
Iodine Binding Sites List in 4h8g
Iodine binding site 1 out
of 12 in the Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 1 of Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I22
b:26.8
occ:1.00
|
I
|
A:PHI22
|
0.0
|
26.8
|
1.0
|
CZ
|
A:PHI22
|
2.1
|
17.1
|
1.0
|
O
|
E:HOH117
|
3.0
|
25.6
|
1.0
|
CE2
|
A:PHI22
|
3.0
|
24.5
|
1.0
|
CE1
|
A:PHI22
|
3.0
|
15.8
|
1.0
|
CA
|
E:ALA19
|
3.9
|
12.3
|
1.0
|
N
|
E:ALA19
|
4.0
|
10.5
|
1.0
|
CG
|
E:LYS18
|
4.0
|
11.2
|
1.0
|
C
|
E:LYS18
|
4.1
|
10.1
|
1.0
|
O
|
A:HOH122
|
4.2
|
21.7
|
1.0
|
O
|
E:LYS18
|
4.2
|
9.9
|
1.0
|
NZ
|
E:LYS15
|
4.3
|
28.5
|
1.0
|
CD2
|
A:PHI22
|
4.3
|
17.9
|
1.0
|
CB
|
A:ALA26
|
4.3
|
15.5
|
1.0
|
CB
|
E:LYS18
|
4.3
|
10.2
|
1.0
|
CD1
|
A:PHI22
|
4.4
|
17.5
|
1.0
|
CB
|
E:ALA19
|
4.4
|
14.2
|
1.0
|
CD
|
E:LYS18
|
4.4
|
14.2
|
1.0
|
CE
|
E:LYS15
|
4.8
|
36.5
|
1.0
|
CE
|
E:LYS18
|
4.8
|
16.5
|
1.0
|
CG
|
A:PHI22
|
4.8
|
16.1
|
1.0
|
CB
|
E:PHI22
|
4.9
|
13.2
|
1.0
|
CD
|
E:LYS15
|
4.9
|
29.1
|
1.0
|
CA
|
E:LYS18
|
4.9
|
10.0
|
1.0
|
O
|
E:HOH102
|
5.0
|
18.9
|
1.0
|
|
Iodine binding site 2 out
of 12 in 4h8g
Go back to
Iodine Binding Sites List in 4h8g
Iodine binding site 2 out
of 12 in the Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 2 of Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:I22
b:22.7
occ:1.00
|
I
|
B:PHI22
|
0.0
|
22.7
|
1.0
|
CZ
|
B:PHI22
|
2.1
|
17.4
|
1.0
|
CE1
|
B:PHI22
|
3.0
|
15.3
|
1.0
|
CE2
|
B:PHI22
|
3.0
|
16.2
|
1.0
|
CD1
|
B:PHI22
|
4.3
|
12.9
|
1.0
|
CD2
|
B:PHI22
|
4.3
|
13.0
|
1.0
|
O
|
C:HOH122
|
4.7
|
27.3
|
1.0
|
O
|
C:HOH121
|
4.8
|
38.1
|
1.0
|
CG
|
B:PHI22
|
4.9
|
10.7
|
1.0
|
|
Iodine binding site 3 out
of 12 in 4h8g
Go back to
Iodine Binding Sites List in 4h8g
Iodine binding site 3 out
of 12 in the Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 3 of Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I22
b:45.1
occ:1.00
|
I
|
C:PHI22
|
0.0
|
45.1
|
1.0
|
CZ
|
C:PHI22
|
2.1
|
26.3
|
1.0
|
CE2
|
C:PHI22
|
3.1
|
27.0
|
1.0
|
CE1
|
C:PHI22
|
3.1
|
27.8
|
1.0
|
CD2
|
C:PHI22
|
4.4
|
18.1
|
1.0
|
CD1
|
C:PHI22
|
4.4
|
19.9
|
1.0
|
CG
|
C:PHI22
|
4.9
|
16.6
|
1.0
|
|
Iodine binding site 4 out
of 12 in 4h8g
Go back to
Iodine Binding Sites List in 4h8g
Iodine binding site 4 out
of 12 in the Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 4 of Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:I22
b:21.8
occ:1.00
|
I
|
D:PHI22
|
0.0
|
21.8
|
1.0
|
CZ
|
D:PHI22
|
2.1
|
11.6
|
1.0
|
CE1
|
D:PHI22
|
3.0
|
16.8
|
1.0
|
CE2
|
D:PHI22
|
3.1
|
14.7
|
1.0
|
O
|
D:HOH103
|
3.2
|
25.3
|
1.0
|
CB
|
D:ALA26
|
4.0
|
13.8
|
1.0
|
CD1
|
D:PHI22
|
4.3
|
16.9
|
1.0
|
O
|
D:HOH129
|
4.3
|
39.7
|
1.0
|
CD2
|
D:PHI22
|
4.4
|
14.0
|
1.0
|
CG
|
D:PHI22
|
4.8
|
12.8
|
1.0
|
|
Iodine binding site 5 out
of 12 in 4h8g
Go back to
Iodine Binding Sites List in 4h8g
Iodine binding site 5 out
of 12 in the Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 5 of Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:I22
b:24.5
occ:1.00
|
I
|
E:PHI22
|
0.0
|
24.5
|
1.0
|
CZ
|
E:PHI22
|
2.1
|
12.7
|
1.0
|
O
|
A:HOH113
|
2.8
|
21.2
|
1.0
|
CE2
|
E:PHI22
|
3.0
|
19.7
|
1.0
|
CE1
|
E:PHI22
|
3.0
|
13.8
|
1.0
|
CA
|
A:ALA19
|
4.0
|
10.5
|
1.0
|
N
|
A:ALA19
|
4.1
|
10.3
|
1.0
|
CG
|
A:LYS18
|
4.1
|
15.7
|
1.0
|
CB
|
A:ALA19
|
4.2
|
11.6
|
1.0
|
CD
|
A:LYS18
|
4.2
|
17.2
|
1.0
|
O
|
A:HOH119
|
4.2
|
35.1
|
1.0
|
CD2
|
E:PHI22
|
4.3
|
18.2
|
1.0
|
C
|
A:LYS18
|
4.3
|
10.3
|
1.0
|
CD1
|
E:PHI22
|
4.4
|
13.2
|
1.0
|
O
|
A:LYS18
|
4.4
|
12.0
|
1.0
|
CE
|
A:LYS18
|
4.5
|
22.7
|
1.0
|
CB
|
A:LYS18
|
4.7
|
12.0
|
1.0
|
CG
|
E:PHI22
|
4.8
|
13.3
|
1.0
|
CB
|
A:PHI22
|
4.8
|
13.7
|
1.0
|
CB
|
E:ALA26
|
4.9
|
23.9
|
1.0
|
O
|
A:HOH103
|
4.9
|
13.5
|
1.0
|
|
Iodine binding site 6 out
of 12 in 4h8g
Go back to
Iodine Binding Sites List in 4h8g
Iodine binding site 6 out
of 12 in the Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 6 of Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:I22
b:24.5
occ:1.00
|
I
|
F:PHI22
|
0.0
|
24.5
|
1.0
|
CZ
|
F:PHI22
|
2.1
|
12.3
|
1.0
|
CE2
|
F:PHI22
|
3.0
|
16.5
|
1.0
|
CE1
|
F:PHI22
|
3.0
|
15.3
|
1.0
|
CB
|
F:ALA26
|
4.2
|
12.4
|
1.0
|
CD2
|
F:PHI22
|
4.3
|
14.9
|
1.0
|
CD1
|
F:PHI22
|
4.4
|
15.4
|
1.0
|
CG
|
F:PHI22
|
4.9
|
14.2
|
1.0
|
|
Iodine binding site 7 out
of 12 in 4h8g
Go back to
Iodine Binding Sites List in 4h8g
Iodine binding site 7 out
of 12 in the Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 7 of Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:I22
b:28.5
occ:1.00
|
I
|
I:PHI22
|
0.0
|
28.5
|
1.0
|
CZ
|
I:PHI22
|
2.1
|
19.1
|
1.0
|
CE1
|
I:PHI22
|
3.0
|
18.6
|
1.0
|
CE2
|
I:PHI22
|
3.1
|
17.5
|
1.0
|
CD1
|
I:PHI22
|
4.4
|
18.9
|
1.0
|
CD2
|
I:PHI22
|
4.4
|
16.1
|
1.0
|
CG
|
I:PHI22
|
4.9
|
15.8
|
1.0
|
|
Iodine binding site 8 out
of 12 in 4h8g
Go back to
Iodine Binding Sites List in 4h8g
Iodine binding site 8 out
of 12 in the Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 8 of Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:I22
b:24.9
occ:1.00
|
I
|
J:PHI22
|
0.0
|
24.9
|
1.0
|
CZ
|
J:PHI22
|
2.1
|
8.9
|
1.0
|
CE2
|
J:PHI22
|
2.9
|
14.6
|
1.0
|
CE1
|
J:PHI22
|
3.0
|
9.9
|
1.0
|
CD2
|
J:PHI22
|
4.3
|
11.4
|
1.0
|
CD1
|
J:PHI22
|
4.3
|
12.1
|
1.0
|
O
|
J:HOH109
|
4.4
|
40.7
|
1.0
|
CG
|
J:PHI22
|
4.8
|
9.4
|
1.0
|
CB
|
J:ALA26
|
4.9
|
18.3
|
1.0
|
|
Iodine binding site 9 out
of 12 in 4h8g
Go back to
Iodine Binding Sites List in 4h8g
Iodine binding site 9 out
of 12 in the Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 9 of Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:I22
b:22.4
occ:1.00
|
I
|
G:PHI22
|
0.0
|
22.4
|
1.0
|
CZ
|
G:PHI22
|
2.1
|
14.0
|
1.0
|
CE2
|
G:PHI22
|
3.0
|
20.2
|
1.0
|
CE1
|
G:PHI22
|
3.0
|
14.6
|
1.0
|
O
|
G:HOH118
|
4.2
|
28.3
|
1.0
|
CD2
|
G:PHI22
|
4.3
|
16.2
|
1.0
|
CD1
|
G:PHI22
|
4.3
|
13.8
|
1.0
|
O
|
K:HOH137
|
4.5
|
31.5
|
1.0
|
CG
|
G:PHI22
|
4.8
|
14.3
|
1.0
|
CB
|
G:ALA26
|
4.8
|
16.0
|
1.0
|
O
|
G:HOH119
|
5.0
|
20.9
|
1.0
|
|
Iodine binding site 10 out
of 12 in 4h8g
Go back to
Iodine Binding Sites List in 4h8g
Iodine binding site 10 out
of 12 in the Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 10 of Crystal Structure of A Parallel 6-Helix Coiled Coil Cc-Hex-Il- 22 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:I22
b:30.0
occ:1.00
|
I
|
H:PHI22
|
0.0
|
30.0
|
1.0
|
CZ
|
H:PHI22
|
2.1
|
11.7
|
1.0
|
CE2
|
H:PHI22
|
3.1
|
21.1
|
1.0
|
CE1
|
H:PHI22
|
3.1
|
19.4
|
1.0
|
O
|
H:HOH124
|
4.2
|
34.5
|
1.0
|
CD2
|
H:PHI22
|
4.4
|
17.5
|
1.0
|
CD1
|
H:PHI22
|
4.4
|
14.8
|
1.0
|
CG
|
H:PHI22
|
4.9
|
12.1
|
1.0
|
|
Reference:
B.Chi,
N.R.Zaccai,
R.L.Brady,
D.N.Woolfson.
Tba J.Am.Chem.Soc..
ISSN: ESSN 1520-5126
Page generated: Sun Aug 11 17:51:45 2024
|