Iodine in PDB 4ifq: Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)]

The structure of Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)], PDB code: 4ifq was solved by P.Sampathkumar, S.C.Almo, New York Structural Genomics Researchconsortium (Nysgrc), Nucleocytoplasmic Transport: A Target Forcellular Control (Npcxstals), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.76 / 3.25
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	134.600, 134.600, 234.794, 90.00, 90.00, 90.00
R / Rfree (%)	18.8 / 24.3

The binding sites of Iodine atom in the Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)] (pdb code 4ifq). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 7 binding sites of Iodine where determined in the Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)], PDB code: 4ifq:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7;

Iodine binding site 1 out of 7 in the Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)]


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)] within 5.0Å range: probe atom residue distance (Å) B Occ A:I1008 b:0.8 occ:1.00 ND1 A:HIS714 3.6 66.5 1.0 CE1 A:HIS714 4.0 73.1 1.0 CG A:HIS714 4.0 61.5 1.0 CA A:PRO779 4.1 55.3 1.0 NZ A:LYS782 4.1 96.5 1.0 CB A:PRO779 4.2 55.7 1.0 CD A:LYS782 4.4 70.5 1.0 CG A:GLN711 4.4 82.4 1.0 CB A:HIS714 4.4 60.2 1.0 CE A:LYS782 4.4 81.2 1.0 CG A:PRO779 4.6 57.5 1.0 CA A:GLN711 4.6 62.6 1.0 NE2 A:HIS714 4.7 75.5 1.0 CD2 A:HIS714 4.7 63.9 1.0 CD A:PRO779 4.7 56.6 1.0 CB A:GLN711 4.8 69.9 1.0 N A:PRO779 4.8 54.3 1.0

Iodine binding site 2 out of 7 in the Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)]


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)] within 5.0Å range: probe atom residue distance (Å) B Occ A:I1009 b:95.8 occ:0.49 CD1 A:TYR703 3.8 76.4 1.0 CB A:TYR703 4.3 64.5 1.0 CG2 A:ILE767 4.5 93.9 1.0 CG A:TYR703 4.5 71.0 1.0 CG2 A:VAL768 4.5 0.1 1.0 CE1 A:TYR703 4.7 83.7 1.0 CG1 A:ILE767 4.8 96.0 1.0

Iodine binding site 3 out of 7 in the Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)]


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)] within 5.0Å range: probe atom residue distance (Å) B Occ A:I1010 b:90.0 occ:0.55 CB A:LEU521 4.1 65.3 1.0 CG A:GLU604 4.2 0.2 1.0 OD1 A:ASN520 4.4 99.0 1.0 CB A:GLU604 4.4 0.8 1.0 CD1 A:ILE472 4.4 82.9 1.0 CG2 A:ILE472 4.5 77.9 1.0 CD1 A:LEU521 4.5 67.0 1.0 N A:LEU521 4.7 69.1 1.0 CA A:GLU604 4.7 95.8 1.0 OE2 A:GLU604 4.7 0.1 1.0 CA A:LEU521 4.8 63.4 1.0 CG A:LEU521 4.8 66.9 1.0

Iodine binding site 4 out of 7 in the Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)]


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)] within 5.0Å range: probe atom residue distance (Å) B Occ A:I1011 b:98.9 occ:0.60 CB A:GLU129 3.5 0.7 1.0 CD2 A:LEU130 3.6 0.2 1.0 CG2 A:THR128 3.6 0.2 1.0 N A:GLU129 3.7 0.8 1.0 N A:LEU130 4.0 0.7 1.0 CA A:GLU129 4.1 0.6 1.0 CG A:GLU129 4.1 0.3 1.0 CG A:LEU130 4.6 0.8 1.0 C A:GLU129 4.6 0.3 1.0 C A:THR128 4.7 95.9 1.0 CB A:THR128 4.7 93.4 1.0 CA A:THR128 4.9 87.5 1.0 CE1 A:PHE124 5.0 0.6 1.0

Iodine binding site 5 out of 7 in the Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)]


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)] within 5.0Å range: probe atom residue distance (Å) B Occ A:I1012 b:86.1 occ:0.57 CG A:LYS556 3.6 0.8 1.0 CB A:TRP555 3.8 67.3 1.0 N A:TRP555 3.8 70.0 1.0 N A:LYS556 4.0 68.8 1.0 CE A:LYS556 4.0 0.1 1.0 CA A:GLY548 4.1 87.2 1.0 CA A:TRP555 4.2 71.7 1.0 CB A:SER554 4.3 73.8 1.0 CD1 A:TRP555 4.3 59.9 1.0 O A:PHE547 4.3 94.5 1.0 CD A:LYS556 4.3 0.2 1.0 CG A:TRP555 4.5 60.6 1.0 C A:TRP555 4.5 68.1 1.0 O A:GLY548 4.6 86.1 1.0 OG A:SER554 4.6 71.3 1.0 C A:SER554 4.6 72.1 1.0 CB A:LYS556 4.8 80.2 1.0 C A:GLY548 4.8 95.6 1.0 CA A:SER554 4.8 70.3 1.0 N A:GLY548 4.9 80.8 1.0 CA A:LYS556 4.9 71.1 1.0 C A:PHE547 5.0 77.3 1.0

Iodine binding site 6 out of 7 in the Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)]


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)] within 5.0Å range: probe atom residue distance (Å) B Occ A:I1013 b:0.4 occ:0.45 CA A:ALA165 3.6 80.7 1.0 CB A:ALA165 3.8 85.7 1.0 N A:ALA165 4.0 75.7 1.0 CD2 A:LEU168 4.1 0.0 1.0 O A:LYS164 4.3 87.9 1.0 C A:LYS164 4.3 83.2 1.0 CB A:ASN170 4.5 0.4 1.0 CG A:LYS164 4.6 0.8 1.0 CB A:LEU168 4.7 97.5 1.0 CG A:LEU168 4.7 0.3 1.0 C A:ALA165 4.8 81.3 1.0 CD1 A:LEU168 4.8 0.3 1.0 CB A:LYS164 4.9 95.7 1.0 O A:ALA165 5.0 79.1 1.0

Iodine binding site 7 out of 7 in the Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)]


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of Saccharomyces Cerevisiae NUP192, Residues 2 to 960 [SCNUP192(2-960)] within 5.0Å range: probe atom residue distance (Å) B Occ A:I1014 b:0.2 occ:0.50 N A:THR39 3.3 0.7 1.0 N A:ASP40 3.5 0.6 1.0 C A:ASN38 3.7 0.6 1.0 CD1 A:LEU1 3.7 0.1 1.0 CA A:ASN38 3.8 0.6 1.0 CB A:ASP40 4.0 0.4 1.0 N A:LYS41 4.0 1.0 1.0 CG2 A:THR39 4.1 0.6 1.0 OD1 A:ASP40 4.1 0.9 1.0 CA A:THR39 4.3 0.6 1.0 CA A:ASP40 4.3 0.6 1.0 OD1 A:ASN34 4.3 92.8 1.0 C A:THR39 4.4 0.2 1.0 CZ2 A:TRP3 4.4 0.8 1.0 NZ A:LYS41 4.4 0.8 1.0 O A:ASN38 4.4 94.1 1.0 CG A:ASP40 4.5 0.3 1.0 CH2 A:TRP3 4.7 96.2 1.0 CB A:ASN38 4.7 1.0 1.0 CE A:LYS41 4.7 0.3 1.0 C A:ASP40 4.7 0.2 1.0 CB A:THR39 4.7 0.1 1.0 CB A:LYS41 4.8 0.7 1.0 O A:LEU37 4.8 87.6 1.0 N A:ASN38 4.9 0.6 1.0 CD A:LYS41 4.9 0.0 1.0 CG A:LYS41 5.0 0.9 1.0 CA A:LYS41 5.0 0.7 1.0

P.Sampathkumar, S.J.Kim, P.Upla, W.J.Rice, J.Phillips, B.L.Timney, U.Pieper, J.B.Bonanno, J.Fernandez-Martinez, Z.Hakhverdyan, N.E.Ketaren, T.Matsui, T.M.Weiss, D.L.Stokes, J.M.Sauder, S.K.Burley, A.Sali, M.P.Rout, S.C.Almo. Structure, Dynamics, Evolution, and Function of A Major Scaffold Component in the Nuclear Pore Complex. Structure V. 21 560 2013.
ISSN: ISSN 0969-2126
PubMed: 23499021
DOI: 10.1016/J.STR.2013.02.005