Iodine in PDB 4ikg: Crystal Structure of Cell Death-Inducing Dffa-Like Effector C

The structure of Crystal Structure of Cell Death-Inducing Dffa-Like Effector C, PDB code: 4ikg was solved by M.Yang, J.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.68 / 1.93
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	61.615, 61.615, 44.989, 90.00, 90.00, 120.00
R / Rfree (%)	29.2 / 30.6

The binding sites of Iodine atom in the Crystal Structure of Cell Death-Inducing Dffa-Like Effector C (pdb code 4ikg). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 5 binding sites of Iodine where determined in the Crystal Structure of Cell Death-Inducing Dffa-Like Effector C, PDB code: 4ikg:
Jump to Iodine binding site number: 1; 2; 3; 4; 5;

Iodine binding site 1 out of 5 in the Crystal Structure of Cell Death-Inducing Dffa-Like Effector C


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Cell Death-Inducing Dffa-Like Effector C within 5.0Å range: probe atom residue distance (Å) B Occ A:I201 b:7.7 occ:0.10 O A:HOH312 3.4 49.9 1.0 O A:HOH304 3.4 28.1 1.0 NH2 A:ARG46 4.0 22.7 1.0 CB A:LYS103 4.2 47.0 1.0 O A:LYS103 4.2 48.9 1.0 C A:LYS103 4.5 46.5 1.0 CD A:LYS103 4.9 48.0 1.0 N A:ASP104 4.9 30.7 1.0 CG A:PRO44 4.9 30.6 1.0 CZ A:ARG46 5.0 25.1 1.0

Iodine binding site 2 out of 5 in the Crystal Structure of Cell Death-Inducing Dffa-Like Effector C


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Cell Death-Inducing Dffa-Like Effector C within 5.0Å range: probe atom residue distance (Å) B Occ A:I202 b:58.1 occ:0.17 O A:HOH324 3.3 70.6 1.0 NZ A:LYS69 3.3 69.7 1.0 CD2 A:HIS61 3.3 65.4 0.5 O A:MET59 3.3 60.3 1.0 ND1 A:HIS61 3.4 62.4 0.5 C A:MET59 3.6 56.5 1.0 CB A:MET59 3.7 53.0 1.0 CB A:ALA42 3.8 68.1 1.0 CE1 A:HIS61 3.8 63.4 0.5 I A:IOD205 3.9 76.9 0.3 N A:ALA60 4.0 51.6 1.0 N A:HIS61 4.1 56.6 0.5 N A:HIS61 4.1 56.7 0.5 NE2 A:HIS61 4.1 73.6 0.5 CA A:ALA60 4.2 53.4 1.0 CG A:HIS61 4.2 63.3 0.5 C A:ALA60 4.3 51.3 1.0 CA A:MET59 4.3 52.8 1.0 CG A:HIS61 4.3 58.6 0.5 CE A:LYS69 4.5 71.5 1.0 CB A:HIS61 4.7 59.0 0.5 CA A:ALA42 4.7 64.6 1.0 CA A:HIS61 4.8 55.5 0.5 CA A:HIS61 4.8 55.2 0.5 CB A:HIS61 4.8 58.7 0.5 NE2 A:HIS61 4.9 59.5 0.5

Iodine binding site 3 out of 5 in the Crystal Structure of Cell Death-Inducing Dffa-Like Effector C


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of Cell Death-Inducing Dffa-Like Effector C within 5.0Å range: probe atom residue distance (Å) B Occ A:I203 b:56.7 occ:0.25 O A:HOH325 3.5 51.7 1.0 N A:MET59 3.5 54.1 1.0 O A:HOH324 3.6 70.6 1.0 CB A:MET59 3.7 53.0 1.0 CG A:MET59 4.0 48.9 1.0 CA A:MET59 4.1 52.8 1.0 O A:MET59 4.1 60.3 1.0 CE A:LYS69 4.5 71.5 1.0 C A:ILE58 4.6 37.3 1.0 C A:MET59 4.6 56.5 1.0 CA A:ILE58 4.6 39.2 1.0 CG2 A:ILE58 4.7 44.2 1.0 NZ A:LYS69 5.0 69.7 1.0

Iodine binding site 4 out of 5 in the Crystal Structure of Cell Death-Inducing Dffa-Like Effector C


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of Cell Death-Inducing Dffa-Like Effector C within 5.0Å range: probe atom residue distance (Å) B Occ A:I204 b:86.6 occ:0.36 NZ A:LYS56 3.6 76.5 1.0 O A:LEU74 4.1 72.5 1.0 C A:LEU74 4.4 71.2 1.0 CB A:LYS75 4.5 84.5 1.0 CG2 A:VAL54 4.5 71.4 1.0 CE A:LYS56 4.5 70.2 1.0 CG A:LYS75 4.6 86.0 1.0 CD A:LYS75 4.6 89.3 1.0 CG1 A:VAL54 4.7 80.0 1.0 CA A:LEU74 4.7 64.3 1.0 O A:ILE73 4.8 69.3 1.0 N A:LYS75 4.9 75.6 1.0

Iodine binding site 5 out of 5 in the Crystal Structure of Cell Death-Inducing Dffa-Like Effector C


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of Cell Death-Inducing Dffa-Like Effector C within 5.0Å range: probe atom residue distance (Å) B Occ A:I205 b:76.9 occ:0.28 O A:HOH324 3.5 70.6 1.0 CB A:ALA42 3.8 68.1 1.0 I A:IOD202 3.9 58.1 0.2 CB A:MET59 4.1 53.0 1.0 CG A:MET59 4.2 48.9 1.0 CE A:MET59 4.5 43.2 1.0

Z.Sun, J.Gong, H.Wu, W.Xu, L.Wu, D.Xu, J.Gao, J.W.Wu, H.Yang, M.Yang, P.Li. PERILIPIN1 Promotes Unilocular Lipid Droplet Formation Through the Activation of FSP27 in Adipocytes. Nat Commun V. 4 1594 2013.
ISSN: ESSN 2041-1723
PubMed: 23481402
DOI: 10.1038/NCOMMS2581