Iodine in PDB 4iqz: The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli

All present enzymatic activity of The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli:
2.7.7.6;

The structure of The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli, PDB code: 4iqz was solved by V.Bhandari, S.N.Sugiman-Marangos, H.S.Naushad, R.S.Gupta, M.S.Junop, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.99 / 2.10
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	198.060, 65.630, 81.292, 90.00, 108.92, 90.00
R / Rfree (%)	20.3 / 24

The structure of The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli also contains other interesting chemical elements:

Sodium

(Na)

7 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 56;

Binding sites:

The binding sites of Iodine atom in the The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli (pdb code 4iqz). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 56 binding sites of Iodine where determined in the The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli, PDB code: 4iqz:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 56 in the The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:I301 b:28.8 occ:0.85 O A:HOH516 3.1 60.2 1.0 O A:HOH445 3.1 43.0 1.0 O A:HOH460 3.5 33.0 1.0 ND2 A:ASN108 3.6 20.6 1.0 CE A:LYS61 4.0 40.6 1.0 CG1 A:VAL91 4.1 17.7 1.0 CE D:MSE184 4.2 38.3 1.0 CG D:MSE184 4.2 38.6 1.0 CB A:VAL91 4.3 20.1 1.0 CD A:LYS61 4.4 24.8 1.0 CB A:ASN108 4.5 19.6 1.0 CB D:MSE184 4.5 35.2 1.0 CG A:ASN108 4.5 19.6 1.0 CG2 A:VAL91 4.6 24.7 1.0 CG2 D:THR182 4.8 41.0 1.0 O D:HOH424 5.0 39.8 1.0

Iodine binding site 2 out of 56 in the The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:I302 b:29.1 occ:0.81 O A:HOH465 3.2 30.7 1.0 O A:HOH469 3.3 41.9 1.0 CG A:GLU76 4.0 45.1 1.0 CA A:GLY45 4.1 26.3 1.0 CA A:ASP75 4.1 22.0 1.0 CB A:ASP75 4.3 23.3 1.0 N A:GLU76 4.3 29.0 1.0 CG A:LYS44 4.4 31.6 1.0 N A:GLY45 4.5 22.6 1.0 NZ A:LYS81 4.5 23.2 1.0 O A:LYS44 4.6 20.1 1.0 C A:ASP75 4.7 23.2 1.0 OE2 A:GLU76 4.7 54.7 1.0 C A:LYS44 4.7 22.4 1.0 CD A:LYS44 4.7 35.6 1.0 CD A:GLU76 4.7 54.2 1.0 O A:ILE74 4.8 23.9 1.0 C A:GLY45 4.8 23.2 1.0

Iodine binding site 3 out of 56 in the The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:I303 b:39.6 occ:0.62 O A:HOH404 3.4 18.9 1.0 N A:GLN203 3.7 21.6 1.0 CG2 A:VAL202 3.8 35.6 1.0 CA A:VAL202 4.0 22.4 1.0 CD1 D:TRP109 4.2 30.3 1.0 NE1 D:TRP109 4.2 32.6 1.0 O D:HOH459 4.3 51.5 1.0 CB A:GLN203 4.3 20.1 1.0 C A:VAL202 4.4 23.6 1.0 CB D:PRO87 4.5 29.9 1.0 CB A:VAL202 4.5 28.3 1.0 CA A:GLN203 4.6 18.8 1.0 O D:ASP110 4.7 26.4 1.0 O A:GLY201 4.7 25.5 1.0 CG D:PRO87 4.7 31.0 1.0 O D:HOH430 4.8 44.2 1.0 CA D:PRO111 4.8 38.5 1.0 O D:PRO111 4.9 37.1 1.0

Iodine binding site 4 out of 56 in the The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:I304 b:27.9 occ:0.46 CG A:GLU98 2.7 35.3 1.0 N A:GLY95 3.4 23.1 1.0 CB A:GLU98 3.8 25.7 1.0 NH2 D:ARG164 3.9 34.4 1.0 CA A:LYS94 3.9 28.2 1.0 CE1 D:PHE189 4.1 22.1 1.0 C A:LYS94 4.2 25.6 1.0 CZ D:PHE189 4.2 21.9 1.0 CA A:GLY95 4.3 28.3 1.0 CD A:LYS94 4.5 37.7 1.0 CD D:ARG164 4.5 31.1 1.0 O A:ALA93 4.5 24.3 1.0 CB A:LYS94 4.6 30.9 1.0 CB D:ARG164 4.6 26.8 1.0 O D:HOH458 4.8 54.0 1.0 O D:HOH428 4.8 41.4 1.0 NE2 D:GLN187 4.8 42.0 1.0 O D:HOH479 4.9 57.4 1.0 O A:GLY95 4.9 17.9 1.0 CZ D:ARG164 4.9 34.5 1.0 CG D:ARG164 4.9 29.1 1.0 C A:GLY95 5.0 25.3 1.0

Iodine binding site 5 out of 56 in the The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:I305 b:31.6 occ:0.38 O A:ASN51 3.6 26.4 1.0 C A:ASN51 3.8 24.9 1.0 O A:HOH401 3.8 20.7 1.0 CG A:LYS53 4.1 27.5 1.0 CB A:SER66 4.2 22.4 1.0 N A:VAL52 4.2 20.2 1.0 CA A:ASN51 4.2 27.4 1.0 O A:HOH491 4.3 40.8 1.0 C A:VAL52 4.4 19.9 1.0 O A:VAL52 4.5 22.4 1.0 I A:IOD311 4.5 42.6 0.5 CB A:ASN51 4.5 26.2 1.0 N A:LYS53 4.7 19.3 1.0 CA A:VAL52 4.7 19.5 1.0 OG A:SER66 5.0 17.8 1.0

Iodine binding site 6 out of 56 in the The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:I306 b:45.7 occ:0.53 N A:VAL56 3.5 19.9 1.0 O D:HOH427 3.8 45.3 1.0 CG2 A:VAL55 3.8 25.9 1.0 CB A:VAL56 3.9 19.1 1.0 O A:HOH456 4.0 24.8 1.0 CG2 A:VAL56 4.1 20.1 1.0 CA D:PRO191 4.1 27.9 1.0 CB D:PRO191 4.2 31.1 1.0 N D:GLY192 4.3 33.0 1.0 CA A:VAL56 4.3 20.8 1.0 O A:VAL56 4.4 15.0 1.0 CA A:VAL55 4.4 15.5 1.0 C A:VAL55 4.5 16.9 1.0 CB A:VAL55 4.7 25.5 1.0 C D:PRO191 4.7 28.1 1.0 O A:HOH438 4.7 42.5 1.0 C A:VAL56 4.9 14.3 1.0 NA A:NA317 4.9 22.5 1.0

Iodine binding site 7 out of 56 in the The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:I307 b:32.0 occ:0.35 O E:HOH462 1.8 43.1 1.0 O E:HOH461 2.0 59.6 1.0 NZ A:LYS168 3.0 32.4 1.0 N E:ARG137 3.3 36.9 1.0 CE A:LYS168 3.4 29.8 1.0 OG1 E:THR136 3.7 41.9 1.0 CA E:THR136 3.9 35.2 1.0 O E:ARG137 4.0 45.5 1.0 C E:THR136 4.1 34.1 1.0 CB E:ASP131 4.2 28.7 1.0 N E:GLY132 4.2 25.2 1.0 CA E:ARG137 4.2 39.0 1.0 CB E:THR136 4.3 37.2 1.0 CB E:ARG137 4.3 39.5 1.0 C E:ARG137 4.5 42.1 1.0 CB A:ARG125 4.6 19.0 1.0 C E:ASP131 4.7 25.8 1.0 CA E:ASP131 4.7 26.3 1.0 CG1 A:VAL170 4.7 16.6 1.0 O E:ILE135 4.7 24.6 1.0 CA E:GLY132 4.8 24.9 1.0 CD A:LYS168 4.9 31.6 1.0

Iodine binding site 8 out of 56 in the The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:I308 b:30.6 occ:0.33 O A:HOH526 1.8 48.8 1.0 O A:HOH468 3.0 36.0 1.0 OG1 A:THR65 3.3 22.0 1.0 CB A:THR65 4.0 20.6 1.0 CG1 A:VAL55 4.1 25.9 1.0 CG2 A:THR65 4.1 21.6 1.0 CB A:VAL55 4.2 25.5 1.0 CB A:GLU119 4.3 23.9 1.0 O A:GLU119 4.3 17.6 1.0 CG A:GLU119 4.4 34.3 1.0 CA A:GLU119 4.4 19.5 1.0 C A:GLU119 4.8 19.2 1.0 CG2 A:VAL55 4.9 25.9 1.0 O A:SER54 4.9 17.5 1.0

Iodine binding site 9 out of 56 in the The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:I309 b:24.3 occ:0.23 OG A:SER83 2.8 32.2 1.0 NZ A:LYS85 3.4 44.9 1.0 CB A:SER83 3.6 21.3 1.0 OE2 A:GLU70 3.6 38.6 1.0 N A:TYR84 3.7 13.2 1.0 CD A:GLU70 3.7 36.8 1.0 C A:SER83 3.8 17.1 1.0 C A:TYR84 3.8 20.6 1.0 CA A:TYR84 3.9 19.7 1.0 CG A:GLU70 4.0 27.6 1.0 O A:SER83 4.0 18.4 1.0 N A:LYS85 4.0 16.5 1.0 O A:HOH503 4.1 50.4 1.0 O A:TYR84 4.2 16.2 1.0 OE1 A:GLU70 4.2 39.4 1.0 CA A:SER83 4.3 19.2 1.0 CG A:LYS85 4.4 26.6 1.0 CE A:LYS85 4.6 40.0 1.0 CD A:LYS85 4.7 31.9 1.0 CA A:LYS85 4.9 19.5 1.0

Iodine binding site 10 out of 56 in the The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:I310 b:42.3 occ:0.40 NE2 A:GLN215 2.9 45.6 1.0 O B:HOH452 2.9 37.0 1.0 CE A:MSE114 3.6 64.3 1.0 C B:ILE204 3.7 27.4 1.0 N B:SER205 3.7 27.7 1.0 CB B:SER58 3.9 23.2 1.0 CD A:GLN215 4.0 48.3 1.0 O B:ILE204 4.0 26.4 1.0 CB B:SER205 4.0 26.8 1.0 CA B:ILE204 4.1 25.9 1.0 O B:GLN203 4.1 24.9 1.0 CG B:GLN203 4.1 27.4 1.0 N B:ILE204 4.1 20.3 1.0 CG2 A:ILE213 4.1 30.9 1.0 C B:GLN203 4.2 23.3 1.0 CA B:SER205 4.4 27.4 1.0 OG B:SER58 4.4 31.8 1.0 OE1 A:GLN215 4.4 50.8 1.0 OD2 B:ASP208 4.6 24.8 1.0 CB B:GLN203 4.6 25.8 1.0 CD B:GLN203 4.8 34.0 1.0

V.Bhandari, S.N.Sugiman-Marangos, H.S.Naushad, R.S.Gupta, M.S.Junop. The Crystal Structure of A Large Insert in Rna Polymerase (Rpoc) Subunit From E. Coli To Be Published.