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Iodine in PDB 4krw: Novel Re-Arrangement of An Rsma/Csra Family Protein to Create A Structurally Distinct New Rna-Binding Family Member

Protein crystallography data

The structure of Novel Re-Arrangement of An Rsma/Csra Family Protein to Create A Structurally Distinct New Rna-Binding Family Member, PDB code: 4krw was solved by C.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.63 / 2.01
Space group P 31 1 2
Cell size a, b, c (Å), α, β, γ (°) 41.137, 41.137, 72.530, 90.00, 90.00, 120.00
R / Rfree (%) 21.8 / 31.4

Iodine Binding Sites:

The binding sites of Iodine atom in the Novel Re-Arrangement of An Rsma/Csra Family Protein to Create A Structurally Distinct New Rna-Binding Family Member (pdb code 4krw). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Novel Re-Arrangement of An Rsma/Csra Family Protein to Create A Structurally Distinct New Rna-Binding Family Member, PDB code: 4krw:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 4krw

Go back to Iodine Binding Sites List in 4krw
Iodine binding site 1 out of 2 in the Novel Re-Arrangement of An Rsma/Csra Family Protein to Create A Structurally Distinct New Rna-Binding Family Member


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Novel Re-Arrangement of An Rsma/Csra Family Protein to Create A Structurally Distinct New Rna-Binding Family Member within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I200

b:31.3
occ:0.50
NE2 A:GLN47 3.8 35.6 1.0
CD1 A:ILE44 3.8 47.9 1.0
CB A:ILE44 3.9 58.2 1.0
CB A:GLN47 4.0 34.5 1.0
CB A:SER7 4.1 21.9 1.0
CG1 A:ILE44 4.1 52.8 1.0
CG A:GLN47 4.1 45.1 1.0
CB A:ARG49 4.2 30.7 1.0
CD A:GLN47 4.5 42.5 1.0
N A:ARG49 4.5 22.2 1.0
N A:ILE44 4.6 52.0 1.0
CG2 A:ILE44 4.7 61.5 1.0
CA A:ARG49 4.7 25.3 1.0
CA A:SER7 4.8 20.4 1.0
O A:GLN47 4.8 29.1 1.0
C A:GLN47 4.8 30.5 1.0
CA A:ILE44 4.8 58.8 1.0
C A:ALA48 4.8 24.4 1.0
CG A:ARG49 4.8 40.5 1.0
CD A:ARG49 4.9 47.9 1.0

Iodine binding site 2 out of 2 in 4krw

Go back to Iodine Binding Sites List in 4krw
Iodine binding site 2 out of 2 in the Novel Re-Arrangement of An Rsma/Csra Family Protein to Create A Structurally Distinct New Rna-Binding Family Member


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Novel Re-Arrangement of An Rsma/Csra Family Protein to Create A Structurally Distinct New Rna-Binding Family Member within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I201

b:39.2
occ:0.50
CG A:ARG62 3.0 35.1 1.0
NH1 A:ARG62 3.3 37.1 1.0
CD A:ARG62 3.4 39.0 1.0
N A:ARG62 4.0 26.6 1.0
CZ A:ARG62 4.1 40.5 1.0
NE A:ARG62 4.1 39.0 1.0
CB A:ARG62 4.3 31.4 1.0
CD1 A:LEU65 4.4 37.7 1.0
O A:ILE60 4.4 28.3 1.0
CA A:VAL61 4.7 30.2 1.0
CA A:ARG62 4.8 27.1 1.0
C A:VAL61 4.8 28.4 1.0
CD2 A:LEU4 4.9 35.7 1.0
CD1 A:LEU4 4.9 32.0 1.0
CG A:LEU4 5.0 31.9 1.0

Reference:

E.R.Morris, G.Hall, C.Li, S.Heeb, R.V.Kulkarni, L.Lovelock, H.Silistre, M.Messina, M.Camara, J.Emsley, P.Williams, M.S.Searle. Structural Rearrangement in An Rsma/Csra Ortholog of Pseudomonas Aeruginosa Creates A Dimeric Rna-Binding Protein, Rsmn. Structure V. 21 1659 2013.
ISSN: ISSN 0969-2126
PubMed: 23954502
DOI: 10.1016/J.STR.2013.07.007
Page generated: Sun Aug 11 18:29:45 2024

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