Iodine in PDB 4lu4: Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana

The structure of Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana, PDB code: 4lu4 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.92 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	57.560, 43.630, 88.760, 90.00, 91.53, 90.00
R / Rfree (%)	18 / 23.5

The structure of Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana also contains other interesting chemical elements:

Bromine	(Br)	1 atom
Chlorine	(Cl)	2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Iodine atom in the Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana (pdb code 4lu4). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 11 binding sites of Iodine where determined in the Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana, PDB code: 4lu4:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 11 in the Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana within 5.0Å range: probe atom residue distance (Å) B Occ A:I303 b:44.8 occ:0.50 O A:HOH516 2.9 34.6 1.0 O A:HOH580 3.2 31.2 1.0 N A:PRO93 3.7 19.4 1.0 CA A:PRO93 3.9 18.9 1.0 N A:ARG92 3.9 22.7 1.0 CD A:PRO93 4.0 18.5 1.0 CE A:MET91 4.1 20.6 1.0 C A:ARG92 4.1 21.4 1.0 CB A:PRO93 4.1 19.0 1.0 CA A:MET91 4.6 20.1 1.0 C A:MET91 4.6 21.8 1.0 O A:ARG92 4.6 22.7 1.0 CB A:MET91 4.6 19.6 1.0 CG A:PRO93 4.7 18.3 1.0 CA A:ARG92 4.7 23.5 1.0 SD A:MET88 4.7 20.9 1.0 CE A:MET88 4.8 23.8 1.0

Iodine binding site 2 out of 11 in the Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana within 5.0Å range: probe atom residue distance (Å) B Occ A:I304 b:23.8 occ:0.40 O A:HOH582 3.7 24.0 1.0 CA A:ARG180 3.9 18.3 1.0 CG A:ARG180 4.0 19.4 1.0 CB A:ARG180 4.2 17.9 1.0 N A:ARG180 4.2 19.3 1.0 O A:GLU179 4.3 19.5 1.0 CB A:TYR183 4.4 13.1 1.0 CD2 A:TYR183 4.4 13.7 1.0 C A:GLU179 4.5 21.1 1.0 CG A:TYR183 4.7 13.6 1.0 CD A:ARG180 5.0 18.6 1.0

Iodine binding site 3 out of 11 in the Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana within 5.0Å range: probe atom residue distance (Å) B Occ A:I305 b:29.1 occ:0.50 O A:HOH554 3.4 31.4 1.0 O A:HOH525 3.6 22.4 1.0 CG A:PRO207 4.1 18.1 1.0 CB A:ARG128 4.2 17.6 1.0 CD A:ARG128 4.2 15.0 1.0 NE A:ARG128 4.6 15.0 1.0 CB A:PRO207 4.6 18.4 1.0 CG A:ARG128 4.7 15.9 1.0 CD A:PRO207 4.9 17.0 1.0

Iodine binding site 4 out of 11 in the Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana within 5.0Å range: probe atom residue distance (Å) B Occ A:I306 b:22.4 occ:0.30 O A:HOH573 2.9 27.9 1.0 O A:HOH485 3.1 20.6 1.0 ND2 A:ASN152 3.4 9.8 1.0 N A:ASN152 3.4 9.1 1.0 N A:GLY151 3.5 9.8 1.0 O A:HOH432 3.7 17.7 1.0 CA A:LYS150 3.7 11.2 1.0 CB A:ASN152 3.9 9.5 1.0 CD A:LYS150 3.9 16.0 1.0 C A:LYS150 4.0 10.6 1.0 CE1 A:HIS146 4.0 11.5 1.0 CG A:ASN152 4.1 9.7 1.0 CA A:ASN152 4.2 9.3 1.0 CG A:LYS150 4.3 14.7 1.0 C A:GLY151 4.3 9.4 1.0 CA A:GLY151 4.4 9.7 1.0 NE2 A:HIS146 4.4 10.8 1.0 N A:GLY153 4.5 9.2 1.0 CB A:LYS150 4.6 13.0 1.0 N A:LYS150 4.7 11.0 1.0 I A:IOD307 4.8 22.8 0.3 O A:ARG149 4.9 11.2 1.0 C A:ASN152 4.9 9.4 1.0 CE A:LYS150 4.9 18.6 1.0 NZ A:LYS150 4.9 20.1 1.0 O A:LYS150 5.0 9.7 1.0

Iodine binding site 5 out of 11 in the Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana within 5.0Å range: probe atom residue distance (Å) B Occ A:I307 b:22.8 occ:0.30 O A:HOH573 2.6 27.9 1.0 O A:HOH485 2.8 20.6 1.0 N A:ARG154 3.3 10.3 1.0 NH1 A:ARG154 3.3 26.9 1.0 N A:GLY153 3.5 9.2 1.0 CA A:GLY151 3.6 9.7 1.0 C A:GLY151 3.6 9.4 1.0 CD A:ARG154 3.8 20.1 1.0 CG A:ARG154 3.8 16.4 1.0 CA A:GLY153 3.9 9.4 1.0 CB A:ARG154 3.9 13.6 1.0 O A:GLY151 3.9 9.5 1.0 N A:ASN152 4.0 9.1 1.0 C A:GLY153 4.1 9.8 1.0 N A:GLY151 4.2 9.8 1.0 CA A:ARG154 4.2 11.5 1.0 CZ A:ARG154 4.3 26.7 1.0 C A:ASN152 4.4 9.4 1.0 O A:HOH460 4.5 44.1 1.0 CZ A:PHE63 4.5 11.0 1.0 NE A:ARG154 4.5 22.6 1.0 I A:IOD306 4.8 22.4 0.3 CA A:ASN152 4.8 9.3 1.0

Iodine binding site 6 out of 11 in the Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana within 5.0Å range: probe atom residue distance (Å) B Occ A:I308 b:31.4 occ:0.50 O A:HOH491 3.2 20.0 1.0 CA A:TYR27 4.0 19.7 1.0 CG A:LEU26 4.2 16.6 1.0 N A:TYR27 4.3 19.2 1.0 CG A:LYS150 4.3 14.7 1.0 CD1 A:TYR27 4.4 26.2 1.0 CB A:TYR27 4.4 22.1 1.0 CZ A:PHE67 4.4 12.9 1.0 CB A:CYS30 4.5 17.8 1.0 CD2 A:LEU26 4.5 15.9 1.0 CE A:LYS150 4.5 18.6 1.0 SG A:CYS30 4.5 20.4 1.0 C A:LEU26 4.7 18.5 1.0 O A:LEU26 4.7 18.5 1.0 O A:HOH426 4.8 18.1 1.0 CD1 A:LEU14 4.8 12.5 1.0 CG A:TYR27 4.9 24.8 1.0 CE2 A:PHE67 4.9 12.4 1.0

Iodine binding site 7 out of 11 in the Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana within 5.0Å range: probe atom residue distance (Å) B Occ B:I302 b:60.7 occ:0.60 N B:PRO93 3.7 23.7 1.0 CA B:PRO93 3.7 24.7 1.0 CB B:PRO93 3.9 24.2 1.0 CE B:MET91 3.9 21.5 1.0 CD B:PRO93 4.0 23.8 1.0 N B:ARG92 4.2 24.0 1.0 C B:ARG92 4.2 24.0 1.0 CG B:PRO93 4.5 24.1 1.0 O B:ARG92 4.7 22.3 1.0 C B:MET91 4.8 21.1 1.0 CA B:ARG92 4.9 25.1 1.0 CA B:MET91 4.9 19.6 1.0 CB B:MET91 4.9 19.7 1.0 SD B:MET88 4.9 19.6 1.0

Iodine binding site 8 out of 11 in the Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana within 5.0Å range: probe atom residue distance (Å) B Occ B:I303 b:29.7 occ:0.50 O B:HOH481 3.0 34.6 1.0 CA B:TYR27 4.1 28.4 1.0 CG B:LEU26 4.2 22.2 1.0 CD2 B:LEU26 4.3 21.3 1.0 N B:TYR27 4.3 26.9 1.0 CZ B:PHE67 4.4 15.4 1.0 CG B:LYS150 4.4 18.7 1.0 CE B:LYS150 4.4 24.4 1.0 CB B:CYS30 4.5 23.8 1.0 CD2 B:TYR27 4.5 33.8 1.0 CB B:TYR27 4.6 30.7 1.0 C B:LEU26 4.6 25.3 1.0 SG B:CYS30 4.7 22.9 1.0 CD1 B:LEU14 4.7 16.8 1.0 O B:LEU26 4.8 23.6 1.0 O B:HOH480 4.9 20.8 1.0 CB B:LEU26 5.0 24.3 1.0

Iodine binding site 9 out of 11 in the Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana within 5.0Å range: probe atom residue distance (Å) B Occ B:I304 b:31.0 occ:0.50 O B:HOH535 3.4 37.9 1.0 O B:HOH451 3.4 16.9 1.0 O B:HOH476 3.7 31.6 1.0 CG B:ARG154 3.8 18.2 1.0 CB B:ALA38 3.9 24.1 1.0 OG1 B:THR34 3.9 26.7 1.0 O B:THR34 3.9 27.8 1.0 N B:ALA35 4.0 26.6 1.0 C B:THR34 4.0 26.6 1.0 CD B:ARG154 4.0 21.1 1.0 CA B:ALA35 4.1 27.8 1.0 NE B:ARG154 4.1 24.5 1.0 CB B:THR34 4.3 24.9 1.0 CB B:ARG154 4.3 15.4 1.0 CA B:THR34 4.9 25.8 1.0 CB B:ALA35 4.9 30.1 1.0 O B:HOH436 4.9 24.7 1.0 CD1 B:LEU62 4.9 14.6 1.0

Iodine binding site 10 out of 11 in the Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana within 5.0Å range: probe atom residue distance (Å) B Occ B:I305 b:23.7 occ:0.30 O B:HOH429 3.0 22.3 1.0 O B:HOH541 3.0 32.5 1.0 ND2 B:ASN152 3.3 10.3 1.0 O B:HOH430 3.3 22.1 1.0 N B:ASN152 3.4 11.1 1.0 N B:GLY151 3.4 12.6 1.0 CA B:LYS150 3.7 14.2 1.0 CB B:ASN152 3.8 9.8 1.0 C B:LYS150 3.8 13.5 1.0 CE1 B:HIS146 4.0 11.5 1.0 CG B:ASN152 4.0 10.0 1.0 CA B:ASN152 4.1 10.2 1.0 CD B:LYS150 4.1 21.4 1.0 NE2 B:HIS146 4.3 11.2 1.0 C B:GLY151 4.3 11.3 1.0 CA B:GLY151 4.3 12.2 1.0 CG B:LYS150 4.4 18.7 1.0 N B:LYS150 4.6 13.8 1.0 CB B:LYS150 4.6 16.4 1.0 N B:GLY153 4.6 11.1 1.0 O B:ARG149 4.8 13.7 1.0 CE B:LYS150 4.9 24.4 1.0 O B:LYS150 4.9 13.0 1.0 C B:ASN152 4.9 10.4 1.0 ND1 B:HIS146 4.9 11.1 1.0 I B:IOD306 5.0 18.5 0.3 C B:ARG149 5.0 13.7 1.0

D.M.Dranow, J.Abendroth, T.E.Edwards, D.Lorimer. Crystal Structure of the N-Terminal Fic Domain of A Putative Cell Filamentation Protein (Virb-Translocated Bep Effector Protein) From Bartonella Quintana To Be Published.