Iodine in PDB 4luh: Complex of Ovine Serum Albumin with 3,5-Diiodosalicylic Acid
Protein crystallography data
The structure of Complex of Ovine Serum Albumin with 3,5-Diiodosalicylic Acid, PDB code: 4luh
was solved by
A.Bujacz,
J.A.Talaj,
A.J.Pietrzyk,
G.Bujacz,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.22 /
2.20
|
Space group
|
P 32 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
118.530,
118.530,
120.570,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
17.1 /
20.9
|
Iodine Binding Sites:
The binding sites of Iodine atom in the Complex of Ovine Serum Albumin with 3,5-Diiodosalicylic Acid
(pdb code 4luh). This binding sites where shown within
5.0 Angstroms radius around Iodine atom.
In total 4 binding sites of Iodine where determined in the
Complex of Ovine Serum Albumin with 3,5-Diiodosalicylic Acid, PDB code: 4luh:
Jump to Iodine binding site number:
1;
2;
3;
4;
Iodine binding site 1 out
of 4 in 4luh
Go back to
Iodine Binding Sites List in 4luh
Iodine binding site 1 out
of 4 in the Complex of Ovine Serum Albumin with 3,5-Diiodosalicylic Acid
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 1 of Complex of Ovine Serum Albumin with 3,5-Diiodosalicylic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I601
b:98.1
occ:1.00
|
I1
|
A:DIU601
|
0.0
|
98.1
|
1.0
|
C3
|
A:DIU601
|
2.1
|
67.2
|
1.0
|
C4
|
A:DIU601
|
3.0
|
60.6
|
1.0
|
C2
|
A:DIU601
|
3.0
|
63.1
|
1.0
|
O3
|
A:DIU601
|
3.0
|
61.8
|
1.0
|
CD1
|
A:LEU218
|
3.7
|
48.0
|
1.0
|
CG2
|
A:ILE289
|
4.1
|
27.8
|
1.0
|
CG
|
A:LEU218
|
4.3
|
46.5
|
1.0
|
CD2
|
A:LEU218
|
4.3
|
53.6
|
1.0
|
C5
|
A:DIU601
|
4.3
|
65.7
|
1.0
|
NZ
|
A:LYS221
|
4.3
|
79.9
|
1.0
|
C1
|
A:DIU601
|
4.4
|
70.8
|
1.0
|
CD2
|
A:LEU237
|
4.5
|
37.2
|
1.0
|
NH1
|
A:ARG217
|
4.5
|
75.0
|
1.0
|
CZ
|
A:PHE222
|
4.5
|
38.1
|
1.0
|
O
|
A:ILE289
|
4.5
|
34.3
|
1.0
|
CD1
|
A:ILE263
|
4.5
|
28.7
|
1.0
|
NH2
|
A:ARG217
|
4.6
|
83.9
|
1.0
|
CE2
|
A:PHE222
|
4.7
|
45.6
|
1.0
|
CZ
|
A:ARG217
|
4.8
|
85.4
|
1.0
|
CA
|
A:ALA290
|
4.9
|
34.1
|
1.0
|
C6
|
A:DIU601
|
5.0
|
49.6
|
1.0
|
|
Iodine binding site 2 out
of 4 in 4luh
Go back to
Iodine Binding Sites List in 4luh
Iodine binding site 2 out
of 4 in the Complex of Ovine Serum Albumin with 3,5-Diiodosalicylic Acid
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 2 of Complex of Ovine Serum Albumin with 3,5-Diiodosalicylic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I601
b:69.3
occ:1.00
|
I2
|
A:DIU601
|
0.0
|
69.3
|
1.0
|
C5
|
A:DIU601
|
2.1
|
65.7
|
1.0
|
C4
|
A:DIU601
|
3.0
|
60.6
|
1.0
|
C6
|
A:DIU601
|
3.0
|
49.6
|
1.0
|
N
|
A:ALA260
|
3.5
|
26.5
|
1.0
|
CA
|
A:ALA260
|
3.5
|
27.4
|
1.0
|
CB
|
A:ALA260
|
3.6
|
24.9
|
1.0
|
O
|
A:ARG256
|
3.9
|
27.7
|
1.0
|
CG
|
A:ARG256
|
4.1
|
29.9
|
1.0
|
C
|
A:LEU259
|
4.1
|
30.8
|
1.0
|
CG
|
A:LEU259
|
4.2
|
33.0
|
1.0
|
C3
|
A:DIU601
|
4.3
|
67.2
|
1.0
|
C1
|
A:DIU601
|
4.3
|
70.8
|
1.0
|
CB
|
A:LEU259
|
4.3
|
30.4
|
1.0
|
CA
|
A:SER286
|
4.3
|
31.9
|
1.0
|
CD1
|
A:ILE263
|
4.3
|
28.7
|
1.0
|
CD2
|
A:LEU259
|
4.3
|
27.9
|
1.0
|
CD1
|
A:ILE289
|
4.4
|
28.4
|
1.0
|
OG
|
A:SER286
|
4.4
|
35.4
|
1.0
|
CB
|
A:SER286
|
4.5
|
29.8
|
1.0
|
CG2
|
A:ILE289
|
4.5
|
27.8
|
1.0
|
CB
|
A:ILE289
|
4.6
|
30.8
|
1.0
|
O
|
A:SER286
|
4.6
|
33.9
|
1.0
|
O
|
A:LEU259
|
4.7
|
30.2
|
1.0
|
NE
|
A:ARG256
|
4.8
|
30.2
|
1.0
|
CA
|
A:LEU259
|
4.8
|
29.8
|
1.0
|
C2
|
A:DIU601
|
4.9
|
63.1
|
1.0
|
C
|
A:ARG256
|
4.9
|
27.5
|
1.0
|
C
|
A:SER286
|
5.0
|
33.0
|
1.0
|
CD
|
A:ARG256
|
5.0
|
28.2
|
1.0
|
|
Iodine binding site 3 out
of 4 in 4luh
Go back to
Iodine Binding Sites List in 4luh
Iodine binding site 3 out
of 4 in the Complex of Ovine Serum Albumin with 3,5-Diiodosalicylic Acid
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 3 of Complex of Ovine Serum Albumin with 3,5-Diiodosalicylic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I602
b:97.7
occ:1.00
|
I1
|
A:DIU602
|
0.0
|
97.7
|
1.0
|
C3
|
A:DIU602
|
2.2
|
96.3
|
1.0
|
C4
|
A:DIU602
|
3.1
|
91.1
|
1.0
|
C2
|
A:DIU602
|
3.2
|
84.8
|
1.0
|
O3
|
A:DIU602
|
3.4
|
74.2
|
1.0
|
O
|
A:ASP450
|
3.5
|
29.4
|
1.0
|
O
|
A:HOH906
|
3.5
|
52.6
|
1.0
|
CD2
|
A:LEU454
|
3.6
|
28.7
|
1.0
|
CD2
|
A:LEU197
|
3.8
|
30.0
|
1.0
|
CA
|
A:ASP450
|
3.8
|
31.3
|
1.0
|
CB
|
A:ASP450
|
3.9
|
36.7
|
1.0
|
C
|
A:ASP450
|
4.0
|
32.3
|
1.0
|
OD1
|
A:ASP450
|
4.1
|
51.4
|
1.0
|
CB
|
A:SER453
|
4.1
|
30.1
|
1.0
|
CG
|
A:ASP450
|
4.2
|
48.1
|
1.0
|
CG
|
A:LEU454
|
4.2
|
32.2
|
1.0
|
CZ2
|
A:TRP213
|
4.2
|
58.5
|
1.0
|
O
|
A:HOH797
|
4.3
|
48.6
|
1.0
|
NE1
|
A:TRP213
|
4.4
|
61.8
|
1.0
|
C5
|
A:DIU602
|
4.5
|
86.9
|
1.0
|
C1
|
A:DIU602
|
4.5
|
79.4
|
1.0
|
CE2
|
A:TRP213
|
4.6
|
59.8
|
1.0
|
OG
|
A:SER453
|
4.8
|
41.6
|
1.0
|
N
|
A:LEU454
|
4.8
|
25.6
|
1.0
|
OD2
|
A:ASP450
|
4.9
|
56.7
|
1.0
|
CD1
|
A:LEU454
|
4.9
|
29.0
|
1.0
|
|
Iodine binding site 4 out
of 4 in 4luh
Go back to
Iodine Binding Sites List in 4luh
Iodine binding site 4 out
of 4 in the Complex of Ovine Serum Albumin with 3,5-Diiodosalicylic Acid
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 4 of Complex of Ovine Serum Albumin with 3,5-Diiodosalicylic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I602
b:87.5
occ:1.00
|
I2
|
A:DIU602
|
0.0
|
87.5
|
1.0
|
C5
|
A:DIU602
|
2.2
|
86.9
|
1.0
|
OG
|
A:SER201
|
3.0
|
45.6
|
1.0
|
C6
|
A:DIU602
|
3.1
|
84.1
|
1.0
|
C4
|
A:DIU602
|
3.1
|
91.1
|
1.0
|
CD1
|
A:LEU210
|
3.6
|
30.2
|
1.0
|
CD2
|
A:TRP213
|
3.7
|
50.0
|
1.0
|
CG
|
A:TRP213
|
3.7
|
49.9
|
1.0
|
CG
|
A:LEU197
|
4.0
|
33.0
|
1.0
|
CB
|
A:SER201
|
4.0
|
33.7
|
1.0
|
CE3
|
A:TRP213
|
4.1
|
54.5
|
1.0
|
CB
|
A:TRP213
|
4.1
|
36.8
|
1.0
|
CE2
|
A:TRP213
|
4.1
|
59.8
|
1.0
|
CD1
|
A:TRP213
|
4.1
|
56.2
|
1.0
|
NE1
|
A:TRP213
|
4.4
|
61.8
|
1.0
|
O
|
A:LEU197
|
4.4
|
28.6
|
1.0
|
CD2
|
A:LEU197
|
4.4
|
30.0
|
1.0
|
C1
|
A:DIU602
|
4.4
|
79.4
|
1.0
|
CD2
|
A:LEU480
|
4.4
|
43.8
|
1.0
|
C3
|
A:DIU602
|
4.5
|
96.3
|
1.0
|
CD1
|
A:LEU197
|
4.6
|
28.5
|
1.0
|
CA
|
A:ARG198
|
4.6
|
30.2
|
1.0
|
CA
|
A:LEU210
|
4.7
|
30.6
|
1.0
|
CZ3
|
A:TRP213
|
4.7
|
56.3
|
1.0
|
C
|
A:LEU197
|
4.8
|
30.3
|
1.0
|
CZ2
|
A:TRP213
|
4.8
|
58.5
|
1.0
|
CG
|
A:LEU210
|
4.9
|
32.6
|
1.0
|
CB
|
A:LEU210
|
4.9
|
29.9
|
1.0
|
N
|
A:ARG198
|
4.9
|
30.0
|
1.0
|
C2
|
A:DIU602
|
5.0
|
84.8
|
1.0
|
|
Reference:
A.Bujacz,
J.A.Talaj,
A.J.Pietrzyk.
Crystal Structure of Ovine Serum Albumin and Its Complex with 3,5-Diiodosalicylic Acid To Be Published.
Page generated: Sun Aug 11 18:38:24 2024
|