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Iodine in PDB 4noi: 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.

Enzymatic activity of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.

All present enzymatic activity of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.:
2.7.7.6;

Protein crystallography data

The structure of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni., PDB code: 4noi was solved by G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, S.Grimshaw, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.49 / 2.17
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 99.173, 62.743, 93.621, 90.00, 112.52, 90.00
R / Rfree (%) 17.4 / 22.5

Other elements in 4noi:

The structure of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. also contains other interesting chemical elements:

Chlorine (Cl) 14 atoms
Sodium (Na) 1 atom

Iodine Binding Sites:

The binding sites of Iodine atom in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. (pdb code 4noi). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 4 binding sites of Iodine where determined in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni., PDB code: 4noi:
Jump to Iodine binding site number: 1; 2; 3; 4;

Iodine binding site 1 out of 4 in 4noi

Go back to Iodine Binding Sites List in 4noi
Iodine binding site 1 out of 4 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I402

b:51.4
occ:1.00
 O A:HOH564 3.6 51.9 1.0
ND1 B:HIS41 3.6 61.9 1.0
CD2 A:HIS41 3.9 64.8 1.0
CA A:PRO42 3.9 39.8 1.0
O B:ILE37 4.0 43.2 1.0
N A:PRO42 4.0 41.3 1.0
CA B:THR38 4.2 40.5 1.0
C A:HIS41 4.3 41.6 1.0
CB A:PRO42 4.3 42.2 1.0
C B:ILE37 4.3 44.9 1.0
CD A:PRO42 4.3 40.0 1.0
O A:HIS41 4.4 43.2 1.0
CG1 B:ILE37 4.4 46.4 1.0
CB B:HIS41 4.4 41.2 1.0
CD A:ARG45 4.4 70.1 1.0
CG2 B:THR38 4.4 44.4 1.0
N B:THR38 4.4 39.8 1.0
CG B:HIS41 4.4 49.6 1.0
CD1 B:ILE37 4.5 49.4 1.0
CE1 B:HIS41 4.5 59.8 1.0
CG A:HIS41 4.6 60.5 1.0
CB B:ILE37 4.6 45.9 1.0
CB A:HIS41 4.7 51.5 1.0
CB A:ARG45 4.9 49.3 1.0
NE2 A:HIS41 4.9 72.3 1.0
CG A:PRO42 4.9 45.3 1.0
CB B:THR38 4.9 39.9 1.0

Iodine binding site 2 out of 4 in 4noi

Go back to Iodine Binding Sites List in 4noi
Iodine binding site 2 out of 4 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I403

b:68.6
occ:0.50
 OG1 A:THR174 3.6 44.1 1.0
CA A:PHE172 3.8 55.4 1.0
CB A:PHE172 3.8 56.6 1.0
N A:THR174 3.8 47.7 1.0
O A:HOH584 3.8 46.3 1.0
C A:GLY150 3.8 59.1 1.0
O A:GLY150 3.8 50.1 1.0
CB A:THR174 3.9 44.4 1.0
C A:PHE172 4.0 49.6 1.0
N A:PHE173 4.1 52.5 1.0
N A:TYR151 4.1 54.9 1.0
O A:HOH596 4.2 65.6 1.0
CA A:GLY150 4.3 64.5 1.0
CA A:THR174 4.4 43.6 1.0
NE A:ARG177 4.4 60.9 1.0
O A:HOH597 4.4 41.3 0.6
CB A:TYR151 4.4 56.6 1.0
CA A:TYR151 4.5 52.9 1.0
CD A:ARG177 4.5 59.8 1.0
O A:THR174 4.5 43.9 1.0
CD2 A:PHE172 4.6 73.4 1.0
O A:PHE172 4.6 46.8 1.0
CG A:PHE172 4.7 65.7 1.0
CZ A:ARG177 4.7 62.7 1.0
C A:PHE173 4.8 49.0 1.0
C A:THR174 5.0 43.1 1.0

Iodine binding site 3 out of 4 in 4noi

Go back to Iodine Binding Sites List in 4noi
Iodine binding site 3 out of 4 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I404

b:62.5
occ:0.50
 O A:HOH549 3.4 20.9 0.4
O A:HOH562 3.5 65.1 1.0
CD1 A:PHE188 3.9 49.0 1.0
CD A:PRO30 4.1 39.8 1.0
CG A:PRO30 4.1 43.1 1.0
CE1 A:PHE188 4.3 53.1 1.0
CG A:GLU13 4.4 46.5 1.0
OE2 A:GLU13 4.5 67.1 1.0
NE1 A:TRP29 4.5 46.5 1.0
CD1 A:TRP29 4.6 45.4 1.0
CD A:GLU13 4.8 54.3 1.0
CB A:PRO30 5.0 43.1 1.0

Iodine binding site 4 out of 4 in 4noi

Go back to Iodine Binding Sites List in 4noi
Iodine binding site 4 out of 4 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I401

b:50.2
occ:0.50
 OG1 B:THR142 3.3 50.1 1.0
CD2 B:HIS60 3.7 49.2 1.0
CG B:LYS140 3.8 68.2 1.0
C B:PHE141 3.9 42.1 1.0
CA B:PHE141 3.9 40.5 1.0
O B:HOH584 3.9 63.0 1.0
N B:THR142 4.0 38.2 1.0
N B:PHE141 4.0 39.5 1.0
CD B:LYS140 4.1 79.7 1.0
C B:LYS140 4.1 39.1 1.0
O B:LYS140 4.2 34.4 1.0
NE2 B:HIS60 4.3 50.4 1.0
CB B:THR142 4.3 43.0 1.0
O B:PHE141 4.4 36.2 1.0
CB B:LYS140 4.4 50.4 1.0
O B:HIS60 4.4 41.5 1.0
CB B:ASP62 4.5 48.0 1.0
CA B:THR142 4.7 37.4 1.0
N B:ASP62 4.7 39.0 1.0
CA B:LYS140 4.8 44.0 1.0
CG B:HIS60 4.9 40.8 1.0
CA B:ASP62 5.0 43.3 1.0

Reference:

G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, S.Grimshaw, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. To Be Published.
Page generated: Sun Dec 13 19:35:25 2020

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